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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049962 ID=TCONS_00049962|Name=TCONS_00049962|organism=Clytia hemisphaerica|type=transcript|length=6740bpRun BLAST on NCBI protein sequence of TCONS_00049962-protein >TCONS_00049962-protein ID=TCONS_00049962-protein|Name=TCONS_00049962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1453bp MMSHWIHNLAILLIITVNLAVCQSSSPWIETFAIVGKSIELSCDVEFSSIRun BLAST on NCBI transcript from alignment at scaffold_167:1399339..1444126+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049962 ID=TCONS_00049962|Name=TCONS_00049962|organism=Clytia hemisphaerica|type=transcript|length=44788bp|location=Sequence derived from alignment at scaffold_167:1399339..1444126+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1399339..1444126+ >TCONS_00049962 ID=TCONS_00049962|Name=TCONS_00049962|organism=Clytia hemisphaerica|type=CDS|length=61068bp|location=Sequence derived from alignment at scaffold_167:1399339..1444126+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049962 vs. Swiss-Prot (Human)
Match: TUTLB (Protein turtle homolog B OS=Homo sapiens GN=IGSF9B PE=2 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 2.652e-30 Identity = 128/537 (23.84%), Postives = 217/537 (40.41%), Query Frame = 2
Query: 1946 IKAISGTQVQLPC-----VTPHKEYEILTWYRNDTQLPVAIKQKIYT-HAGSNYTARTNFEGK-DLIISPLKISDSAFYYCKTTLNKKD---LEGNMYVKLTVQEQPSCIGAVEKLL-ALNGSSVVLPCQAKGHPIPKISWLRK--VEGAKKWHKLDDRFSITPKGLFLKDVEKEDTGQY-----QIXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXFLPCGKLKVLPGDRIV---WKKDGVNVLEKYRDRASVDVNGTLFLDPVKRGDLGLYQCLVTTKRFEDEVTITKTMFLNVKYVPVIIYILPSVKIYVHKTAVLPCTAQGNPGVNFRWLFPNGERIKNTPDKKYSVSSNGSLIIRNIGTTDAKNYTCAPYSDLGS-GEKRHTELIVFSPPSFFNKAQGTVDVLEGDTVTLDCASGGIPKPVITWGHNNKKIKDGERFKTESI--GKLNIRDVRGSDAGSYACIVRSEAGEIHRSTTLVVKG-KPGTPTLIEVSVESGVVFARWLRAYDGGSPQSFEIWGRLASEDDFSW 3481
+ A +G V L C VT ++ W++ +P+ IK Y H Y R + K L + ++ D +Y CK + + +V LT+ P+ + + A G S+ + C A G+P P ++WL++ + GA +++ D L + V +ED G Y I +T L V P +++A L C + + PG+ W+ + V + R + ++GTL + VK D G Y C+ + + + + +L V+Y ++ + P + + V + C P +G ++ + +++ +GS+ I YTC PY+ LG+ G+ L++ PP F G + + CA+ G P PVITW +K+ R K ++ G L R + D G + C+ + I ST L V G P P + V V W YDGG Q+F +W + A W
Sbjct: 33 VTARAGESVVLRCDVIHPVTGQPPPYVVEWFKFGVPIPIFIKFGYYPPHVDPEYAGRASLHDKASLRLEQVRSEDQGWYECKVLMLDQQYDTFHNGSWVHLTINAPPTFTETPPQYIEAKEGGSITMTCTAFGNPKPIVTWLKEGTLLGASGKYQVSD------GSLTVTSVSREDRGAYTCRAYSIQGEAVHTTHLLVQGPPFIVSPPENITVNISQDALLTC-RAEAYPGNLTYTWYWQDENVYFQNDLKLRVRILIDGTLIIFRVKPEDSGKYTCVPSNSLGR---SPSASAYLTVQYPARVLNMPPVIYVPVGIHGYIRCPVDAEPPATVVKWNKDGRPLQVEKNLGWTLMEDGSIRIEEATEEALGTYTCVPYNTLGTMGQSAPARLVLKDPPYFTVLPGWEYRQEAGRELLIPCAAAGDPFPVITW----RKVGKPSRSKHSALPSGSLQFRALSKEDHGEWECVATNVVTSITASTHLTVIGTSPHAPGSVRVQVSMTTANVSWEPGYDGGYEQTFSVWMKRAQFGPHDW 555 The following BLAST results are available for this feature:
BLAST of TCONS_00049962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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