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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049961 ID=TCONS_00049961|Name=TCONS_00049961|organism=Clytia hemisphaerica|type=transcript|length=1581bp
ATTCTTTTGCAAAGAAATCATTACGCATTATGTGGACGCATTCTTTCAAC
AACCGATCAGGCAGATGTCTCAAAAGATTCCAATGTGACCATTGAATGGA
CATTACTCCCTCTACACCAAGaaaaagctgattggttgacAATCTACCAT
CAGGCAGACGAGAACCAAATCATTCAACCTATTTGGGATGATATCAAAGG
AGTTACCAAATTTGGAAAACAGAAATTCAACGATAAAATGTCTATCAATG
CTGgtcaaaaaaatcaagttgtgCTGCATGTTGAGGAGCTNTTCTATCAA
TGCTGGTCAAAACAACCAAGTTGTGCTGCATATTGTGGAGATTAAAGAAT
CAATGACGATTTATTTAACTGTAGTTTTCATCGATAAGAAAACTGGTGAA
ATTCAAGGTGGTCCATTGTactcaaaaacaaatattttagtcTTTGaagc
tgacaaaatcaaaaatgataCTTTGGTTCAAAAGTTCACCGAGTTTTATC
CCAAGTATGAAGTCTCATTCGATATAAAACCAGTTAGTAGAGTATCTCAA
TGGGCGAATATTCTACACGTGACTCAAGGAGGAGATAATGTCAACTACGG
GGACAGAAACCCGGCAGTTTGGTTTTGGGGTAGCTCTTACAGACTTCATA
TATGTTCGGCTATTAATGGAGATAAAACCCATTGCTACAACACTATCGCC
GAACTACCAACTAACAGATACACTCGTGTCAATATAAAACAGGACGAAGA
TGCGAACGGAGTTTTTTTCTTTGCAGTAAGATTAGGTGGTATAGAAGTGT
ATCGCATACAAAATAACCAGACACAAACTTTCCAGAATGTTAAATTTTAT
CAATCAAATCCATGGTATCCACCTGCGAATGCTTTGATTGGAAACGTTAA
AGTGACAACCATGAAATGCTAAAGATACGATTTATACTCgcttttttgta
taaaaaccagtaaattttggctcacgctgggctgttcttaattttatgAA
ATGTTTGGGCTtacatgttcttacgatgttcttatgATGGGTTTCATTAA
TACGcttattttcttttccttgaaaacttaaaatgggtttaaaatctttt
aaaaacagTATGTACAGTACTGTCTTAGTATTTTCTGAAATCTAAgtctc
agattgttcttaatttgttcttaggttttggccaatgatcagcctcgtgt
tcttttaaaattgttcttgtaaaaaaagcgtATCCCAGACGGCACagaac
gtcaaaacaacgtccatgtgaaattcataacgtccaaataacgttatttg
aacgttaaaacgttgattgaagattttttaaataagcAATATAAATAGAA
ATATGTTTGAAATATATCATACTCATACTTATCAAACCCTTAAAACGTGA
AGAGACTAGGTTAGAGTTTAGATACCAGGACCAGGAAGGGTTGACGTCAA
AAGCTTATCTGTAAAAACATCAACACAACGGCTTCAACTCTGGTTTGGAC
AATCCACTTTTTGCCGTGTCTATTTAAATTGCTGGTCAGAAGTTGATTAA
TTgtccaacctcgttccctgcgcattatcag Run BLAST on NCBI transcript from alignment at scaffold_167:1318052..1320465+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049961 ID=TCONS_00049961|Name=TCONS_00049961|organism=Clytia hemisphaerica|type=transcript|length=2414bp|location=Sequence derived from alignment at scaffold_167:1318052..1320465+ (Clytia hemisphaerica)
ATTCTTTTGCAAAGAAATCATTACGGTAAGCTTAACATTCGGGGATCAGC
CTTATTCTAGGCTTCGGCTCTTCCTCTAACGAAAAGAGCTTCTTATATAC
ATAGAGGTGTGCGATTTAGAATAGCCTCGTTCTTGTACACCAAATGTCTT
AATTATAGACCCATTGGCGGTTTTATACCCTGTCAAACTTATCAGATGGA
GAGATTTATAATtgtagtttcattgttttttaacgagcgttgcactcctt
cgcatgtttccgacgtacttgttctattgtcttaaatccgccagtgtGCT
TAAAACCCATTTTAAGGTCCCGCCCGCTGTAGAGCTCATAttgtttcaac
tttttcgaaatttctacATTGGTATATAAACTCTTTCTTCCAAAGCATTA
TGTGGACGCATTCTTTCAACAACCGATCAGGCAGATGTCTCAAAAGATTC
CAATGTGACCATTGAATGGACATTACTCCCTCTACACCAAGaaaaagctg
attggttgacAATCTACCATCAGGCAGACGAGAACCAAATCATTCAACCT
ATTTGGGATGATATCAAAGGAGTTACCAAATTTGGAAAACAGAAATTCAA
CGATAAAATGTCTATCAATGCTGgtcaaaaaaatcaagttgtgCTGCATG
TTGAGGAGCTNTTCTATCAATGCTGGTCAAAACAACCAAGTTGTGCTGCA
TATTGTGGAGATTAAAGAATCAATGACGATTTATTTAACTGTAGTTTTCA
TCGATAAGAAAACTGGTGAAATTCAAGGTGGTCCATTGTactcaaaaaca
aatattttagtcTTTGGTAAGTTATATGAATAAGTTCCCTCTGTCTTCCT
TTCTAACTCTTATCTGCTATAAATGcaagaaacattttaaaaggGTGAGA
AAGAGCCTATTGTCAGCACTAAGTTAGAAATATCTCTTTACTTTCAATAa
gttaactctctctaattcgaataaattaTTCGAATCTTACTTAAATTCGA
ATGAAAGTTTTGGTTCCTTGAAGATCAAATTAGAGAACGGTAtctcactt
ttcaaaaatacctAAATAAGGGGCCTAGGGCGGGTTTCTTCATTGTCAGA
GCACTGAAATTTGCCCATGATATTGCTAAgaaaaaaatgacgtaatcgaG
ATTGTTCCCTGAAGTTCTTGAACTTTTTTTGTCATANGCCATGATATTAA
GAATGCTAAgaaaaaaatgacgtaatcttgattGTTCCCTGAAGATCTTG
AACTTTCTGTcgtattttgttgattttagaagctgacaaaatcaaaaatg
ataCTTTGGTTCAAAAGTTCACCGAGTTTTATCCCAAGTATGAAGTCTCA
TTCGATATAAAACCAGTTAGTAGAGTATCTCAATGGGCGAATATTCTACA
CGTGACTCAAGGAGGAGATAATGTCAACTACGGGGACAGAAACCCGGCAG
TTTGGTTTTGGGGTAGCTCTTACAGACTTCATATATGTTCGGCTATTAAT
GGAGATAAAACCCATTGCTACAACACTATCGCCGAACTACCAACTAACAG
ATACACTCGTGTCAATATAAAACAGGACGAAGATGCGAACGGAGTTTTTT
TCTTTGCAGTAAGATTAGGTGGTATAGAAGTGTATCGCATACAAAATAAC
CAGACACAAACTTTCCAGAATGTTAAATTTTATCAATCAAATCCATGGTA
TCCACCTGCGAATGCTTTGATTGGAAACGTTAAAGTGACAACCATGAAAT
GCTAAAGATACGATTTATACTCgcttttttgtataaaaaccagtaaattt
tggctcacgctgggctgttcttaattttatgAAATGTTTGGGCTtacatg
ttcttacgatgttcttatgATGGGTTTCATTAATACGcttattttctttt
ccttgaaaacttaaaatgggtttaaaatcttttaaaaacagTATGTACAG
TACTGTCTTAGTATTTTCTGAAATCTAAgtctcagattgttcttaatttg
ttcttaggttttggccaatgatcagcctcgtgttcttttaaaattgttct
tgtaaaaaaagcgtATCCCAGACGGCACagaacgtcaaaacaacgtccat
gtgaaattcataacgtccaaataacgttatttgaacgttaaaacgttgat
tgaagattttttaaataagcAATATAAATAGAAATATGTTTGAAATATAT
CATACTCATACTTATCAAACCCTTAAAACGTGAAGAGACTAGGTTAGAGT
TTAGATACCAGGACCAGGAAGGGTTGACGTCAAAAGCTTATCTGTAAAAA
CATCAACACAACGGCTTCAACTCTGGTTTGGACAATCCACTTTTTGCCGT
GTCTATTTAAATTGCTGGTCAGAAGTTGATTAATTgtccaacctcgttcc
ctgcgcattatcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049961-exon-scaffold_167-1491911889:1318052..1318076 | TCONS_00049961-exon-scaffold_167-1491911889:1318052..1318076 | Clytia hemisphaerica | exon |
| TCONS_00049961-exon-scaffold_167-1510915933:1318052..1318076 | TCONS_00049961-exon-scaffold_167-1510915933:1318052..1318076 | Clytia hemisphaerica | exon |
| TCONS_00049961-exon-scaffold_167-1575043694:1318052..1318076 | TCONS_00049961-exon-scaffold_167-1575043694:1318052..1318076 | Clytia hemisphaerica | exon |
| TCONS_00049961-exon-scaffold_167-1491911889:1318447..1318867 | TCONS_00049961-exon-scaffold_167-1491911889:1318447..1318867 | Clytia hemisphaerica | exon |
| TCONS_00049961-exon-scaffold_167-1510915933:1318447..1318867 | TCONS_00049961-exon-scaffold_167-1510915933:1318447..1318867 | Clytia hemisphaerica | exon |
| TCONS_00049961-exon-scaffold_167-1575043694:1318447..1318867 | TCONS_00049961-exon-scaffold_167-1575043694:1318447..1318867 | Clytia hemisphaerica | exon |
| TCONS_00049961-exon-scaffold_167-1491911889:1319331..1320465 | TCONS_00049961-exon-scaffold_167-1491911889:1319331..1320465 | Clytia hemisphaerica | exon |
| TCONS_00049961-exon-scaffold_167-1510915933:1319331..1320465 | TCONS_00049961-exon-scaffold_167-1510915933:1319331..1320465 | Clytia hemisphaerica | exon |
| TCONS_00049961-exon-scaffold_167-1575043694:1319331..1320465 | TCONS_00049961-exon-scaffold_167-1575043694:1319331..1320465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1318052..1320465 + |
Blast
The following BLAST results are available for this feature:
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