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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049960 ID=TCONS_00049960|Name=TCONS_00049960|organism=Clytia hemisphaerica|type=transcript|length=1609bp
GTGATCAATTATGATGTATGTGCTGGGACAGCTTTCAGCTTTCAAGGGGG
CTGCATTATGTGGACGCATTCTTTCAACAACCGATCAGGCAGATGTCTCA
AAAGATTCCAATGTGACCATTGAATGGACATTACTCCCTCTACACCAAGa
aaaagctgattggttgacAATCTACCATCAGGCAGACGAGAACCAAATCA
TTCAACCTATTTGGGATGATATCAAAGGAGTTACCAAATTTGGAAAACAG
AAATTCAACGATAAAATGTCTATCAATGCTGgtcaaaaaaatcaagttgt
gCTGCATGTTGAGGAGCTNTTCTATCAATGCTGGTCAAAACAACCAAGTT
GTGCTGCATATTGTGGAGATTAAAGAATCAATGACGATTTATTTAACTGT
AGTTTTCATCGATAAGAAAACTGGTGAAATTCAAGGTGGTCCATTGTact
caaaaacaaatattttagtcTTTGaagctgacaaaatcaaaaatgataCT
TTGGTTCAAAAGTTCACCGAGTTTTATCCCAAGTATGAAGTCTCATTCGA
TATAAAACCAGTTAGTAGAGTATCTCAATGGGCGAATATTCTACACGTGA
CTCAAGGAGGAGATAATGTCAACTACGGGGACAGAAACCCGGCAGTTTGG
TTTTGGGGTAGCTCTTACAGACTTCATATATGTTCGGCTATTAATGGAGA
TAAAACCCATTGCTACAACACTATCGCCGAACTACCAACTAACAGATACA
CTCGTGTCAATATAAAACAGGACGAAGATGCGAACGGAGTTTTTTTCTTT
GCAGTAAGATTAGGTGGTATAGAAGTGTATCGCATACAAAATAACCAGAC
ACAAACTTTCCAGAATGTTAAATTTTATCAATCAAATCCATGGTATCCAC
CTGCGAATGCTTTGATTGGAAACGTTAAAGTGACAACCATGAAATGCTAA
AGATACGATTTATACTCgcttttttgtataaaaaccagtaaattttggct
cacgctgggctgttcttaattttatgAAATGTTTGGGCTtacatgttctt
acgatgttcttatgATGGGTTTCATTAATACGcttattttcttttccttg
aaaacttaaaatgggtttaaaatcttttaaaaacagTATGTACAGTACTG
TCTTAGTATTTTCTGAAATCTAAgtctcagattgttcttaatttgttctt
aggttttggccaatgatcagcctcgtgttcttttaaaattgttcttgtaa
aaaaagcgtATCCCAGACGGCACagaacgtcaaaacaacgtccatgtgaa
attcataacgtccaaataacgttatttgaacgttaaaacgttgattgaag
attttttaaataagcAATATAAATAGAAATATGTTTGAAATATATCATAC
TCATACTTATCAAACCCTTAAAACGTGAAGAGACTAGGTTAGAGTTTAGA
TACCAGGACCAGGAAGGGTTGACGTCAAAAGCTTATCTGTAAAAACATCA
ACACAACGGCTTCAACTCTGGTTTGGACAATCCACTTTTTGCCGTGTCTA
TTTAAATTGCTGGTCAGAAGTTGATTAATTgtccaacctcgttccctgcg
cattatcag Run BLAST on NCBI protein sequence of TCONS_00049960-protein >TCONS_00049960-protein ID=TCONS_00049960-protein|Name=TCONS_00049960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MISKELPNLENRNSTIKCLSMLVKKIKLCCMLRSXSINAGQNNQVVLHIV
EIKESMTIYLTVVFIDKKTGEIQGGPLYSKTNILVFEADKIKNDTLVQKF
TEFYPKYEVSFDIKPVSRVSQWANILHVTQGGDNVNYGDRNPAVWFWGSS
YRLHICSAINGDKTHCYNTIAELPTNRYTRVNIKQDEDANGVFFFAVRLG
GIEVYRIQNNQTQTFQNVKFYQSNPWYPPANALIGNVKVTTMKC Run BLAST on NCBI transcript from alignment at scaffold_167:1317386..1320465+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049960 ID=TCONS_00049960|Name=TCONS_00049960|organism=Clytia hemisphaerica|type=transcript|length=3080bp|location=Sequence derived from alignment at scaffold_167:1317386..1320465+ (Clytia hemisphaerica)
GTGATCAATTATGATGTATGTGCTGGGACAGCTTTCAGCTTTCAAGGGGG
CTGGTAATAAACTAGCTTTAATTACTTTAGTTCGCTTGTGTAGTGAATGA
ATGCTGAAAATAATTTGCGCTAAATCCCTTGCACCAAAAAAATTCCTATG
TAAGCTGTGTACTAGTCCTTTAGCAATTCGACCACGGAGATAACAGTTGA
GAGTTGTCTGTgcatttacacgctttttttataagaatacactttataag
aatgccaATGATGAAAAAGGCCGAAAAAGTTatgaataatgctaagaata
tcaccatcataggaTTTTGCTACtcaatgccatttttagagcattttcaa
tcataaattgtcaattacctccaagtaaggctcactcctttcacaaaaat
gcttttatgcttgagacgtatgtactaaatgttagatctagtctgaatta
ggatcctaacctaagaatgctataagaatattttaggatgattttctcaa
aaaagttaagaatatccatgatgaaatggatttacaccattcttataaaa
aaagcgtgtaagttGGCATTTGCctctaaattttctttttaggtAGGTAA
AACACCCTTCAAACAATGCAGgggaaaaagatttcaaatgGATCGTTCAT
ATCTTTTTTGCTCATAATTCTTTTGCAAAGAAATCATTACGGTAAGCTTA
ACATTCGGGGATCAGCCTTATTCTAGGCTTCGGCTCTTCCTCTAACGAAA
AGAGCTTCTTATATACATAGAGGTGTGCGATTTAGAATAGCCTCGTTCTT
GTACACCAAATGTCTTAATTATAGACCCATTGGCGGTTTTATACCCTGTC
AAACTTATCAGATGGAGAGATTTATAATtgtagtttcattgttttttaac
gagcgttgcactccttcgcatgtttccgacgtacttgttctattgtctta
aatccgccagtgtGCTTAAAACCCATTTTAAGGTCCCGCCCGCTGTAGAG
CTCATAttgtttcaactttttcgaaatttctacATTGGTATATAAACTCT
TTCTTCCAAAGCATTATGTGGACGCATTCTTTCAACAACCGATCAGGCAG
ATGTCTCAAAAGATTCCAATGTGACCATTGAATGGACATTACTCCCTCTA
CACCAAGaaaaagctgattggttgacAATCTACCATCAGGCAGACGAGAA
CCAAATCATTCAACCTATTTGGGATGATATCAAAGGAGTTACCAAATTTG
GAAAACAGAAATTCAACGATAAAATGTCTATCAATGCTGgtcaaaaaaat
caagttgtgCTGCATGTTGAGGAGCTNTTCTATCAATGCTGGTCAAAACA
ACCAAGTTGTGCTGCATATTGTGGAGATTAAAGAATCAATGACGATTTAT
TTAACTGTAGTTTTCATCGATAAGAAAACTGGTGAAATTCAAGGTGGTCC
ATTGTactcaaaaacaaatattttagtcTTTGGTAAGTTATATGAATAAG
TTCCCTCTGTCTTCCTTTCTAACTCTTATCTGCTATAAATGcaagaaaca
ttttaaaaggGTGAGAAAGAGCCTATTGTCAGCACTAAGTTAGAAATATC
TCTTTACTTTCAATAagttaactctctctaattcgaataaattaTTCGAA
TCTTACTTAAATTCGAATGAAAGTTTTGGTTCCTTGAAGATCAAATTAGA
GAACGGTAtctcacttttcaaaaatacctAAATAAGGGGCCTAGGGCGGG
TTTCTTCATTGTCAGAGCACTGAAATTTGCCCATGATATTGCTAAgaaaa
aaatgacgtaatcgaGATTGTTCCCTGAAGTTCTTGAACTTTTTTTGTCA
TANGCCATGATATTAAGAATGCTAAgaaaaaaatgacgtaatcttgattG
TTCCCTGAAGATCTTGAACTTTCTGTcgtattttgttgattttagaagct
gacaaaatcaaaaatgataCTTTGGTTCAAAAGTTCACCGAGTTTTATCC
CAAGTATGAAGTCTCATTCGATATAAAACCAGTTAGTAGAGTATCTCAAT
GGGCGAATATTCTACACGTGACTCAAGGAGGAGATAATGTCAACTACGGG
GACAGAAACCCGGCAGTTTGGTTTTGGGGTAGCTCTTACAGACTTCATAT
ATGTTCGGCTATTAATGGAGATAAAACCCATTGCTACAACACTATCGCCG
AACTACCAACTAACAGATACACTCGTGTCAATATAAAACAGGACGAAGAT
GCGAACGGAGTTTTTTTCTTTGCAGTAAGATTAGGTGGTATAGAAGTGTA
TCGCATACAAAATAACCAGACACAAACTTTCCAGAATGTTAAATTTTATC
AATCAAATCCATGGTATCCACCTGCGAATGCTTTGATTGGAAACGTTAAA
GTGACAACCATGAAATGCTAAAGATACGATTTATACTCgcttttttgtat
aaaaaccagtaaattttggctcacgctgggctgttcttaattttatgAAA
TGTTTGGGCTtacatgttcttacgatgttcttatgATGGGTTTCATTAAT
ACGcttattttcttttccttgaaaacttaaaatgggtttaaaatctttta
aaaacagTATGTACAGTACTGTCTTAGTATTTTCTGAAATCTAAgtctca
gattgttcttaatttgttcttaggttttggccaatgatcagcctcgtgtt
cttttaaaattgttcttgtaaaaaaagcgtATCCCAGACGGCACagaacg
tcaaaacaacgtccatgtgaaattcataacgtccaaataacgttatttga
acgttaaaacgttgattgaagattttttaaataagcAATATAAATAGAAA
TATGTTTGAAATATATCATACTCATACTTATCAAACCCTTAAAACGTGAA
GAGACTAGGTTAGAGTTTAGATACCAGGACCAGGAAGGGTTGACGTCAAA
AGCTTATCTGTAAAAACATCAACACAACGGCTTCAACTCTGGTTTGGACA
ATCCACTTTTTGCCGTGTCTATTTAAATTGCTGGTCAGAAGTTGATTAAT
Tgtccaacctcgttccctgcgcattatcag Coding sequence (CDS) from alignment at scaffold_167:1317386..1320465+ >TCONS_00049960 ID=TCONS_00049960|Name=TCONS_00049960|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_167:1317386..1320465+ (Clytia hemisphaerica)
ATGATATCAAAGGAGTTACCAAATTTGGAAAACAGAAATTCAACGATAAA
ATGTCTATCAATGCTGgtcaaaaaaatcaagttgtgCTGCATGTTGAGGA
GCTNTTCTATCAATGCTGGTCAAAACAACCAAGTTGTGCTGCATATTGTG
GAGATTAAAGAATCAATGACGATTTATTTAACTGTAGTTTTCATCGATAA
GAAAACTGGTGAAATTCAAGGTGGTCCATTGTactcaaaaacaaatattt
tagtcTTTGaagctgacaaaatcaaaaatgataCTTTGGTTCAAAAGTTC
ACCGAGTTTTATCCCAAGTATGAAGTCTCATTCGATATAAAACCAGTTAG
TAGAGTATCTCAATGGGCGAATATTCTACACGTGACTCAAGGAGGAGATA
ATGTCAACTACGGGGACAGAAACCCGGCAGTTTGGTTTTGGGGTAGCTCT
TACAGACTTCATATATGTTCGGCTATTAATGGAGATAAAACCCATTGCTA
CAACACTATCGCCGAACTACCAACTAACAGATACACTCGTGTCAATATAA
AACAGGACGAAGATGCGAACGGAGTTTTTTTCTTTGCAGTAAGATTAGGT
GGTATAGAAGTGTATCGCATACAAAATAACCAGACACAAACTTTCCAGAA
TGTTAAATTTTATCAATCAAATCCATGGTATCCACCTGCGAATGCTTTGA
TTGGAAACGTTAAAGTGACAACCATGAAATGCTAAATGATATCAAAGGAG
TTACCAAATTTGGAAAACAGAAATTCAACGATAAAATGTCTATCAATGCT
GgtcaaaaaaatcaagttgtgCTGCATGTTGAGGAGCTNTTCTATCAATG
CTGGTCAAAACAACCAAGTTGTGCTGCATATTGTGGAGATTAAAGAATCA
ATGACGATTTATTTAACTGTAGTTTTCATCGATAAGAAAACTGGTGAAAT
TCAAGGTGGTCCATTGTactcaaaaacaaatattttagtcTTTGaagctg
acaaaatcaaaaatgataCTTTGGTTCAAAAGTTCACCGAGTTTTATCCC
AAGTATGAAGTCTCATTCGATATAAAACCAGTTAGTAGAGTATCTCAATG
GGCGAATATTCTACACGTGACTCAAGGAGGAGATAATGTCAACTACGGGG
ACAGAAACCCGGCAGTTTGGTTTTGGGGTAGCTCTTACAGACTTCATATA
TGTTCGGCTATTAATGGAGATAAAACCCATTGCTACAACACTATCGCCGA
ACTACCAACTAACAGATACACTCGTGTCAATATAAAACAGGACGAAGATG
CGAACGGAGTTTTTTTCTTTGCAGTAAGATTAGGTGGTATAGAAGTGTAT
CGCATACAAAATAACCAGACACAAACTTTCCAGAATGTTAAATTTTATCA
ATCAAATCCATGGTATCCACCTGCGAATGCTTTGATTGGAAACGTTAAAG
TGACAACCATGAAATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049960-exon-scaffold_167-1491911889:1317386..1317438 | TCONS_00049960-exon-scaffold_167-1491911889:1317386..1317438 | Clytia hemisphaerica | exon |
| TCONS_00049960-exon-scaffold_167-1510915933:1317386..1317438 | TCONS_00049960-exon-scaffold_167-1510915933:1317386..1317438 | Clytia hemisphaerica | exon |
| TCONS_00049960-exon-scaffold_167-1575043694:1317386..1317438 | TCONS_00049960-exon-scaffold_167-1575043694:1317386..1317438 | Clytia hemisphaerica | exon |
| TCONS_00049960-exon-scaffold_167-1491911889:1318447..1318867 | TCONS_00049960-exon-scaffold_167-1491911889:1318447..1318867 | Clytia hemisphaerica | exon |
| TCONS_00049960-exon-scaffold_167-1510915933:1318447..1318867 | TCONS_00049960-exon-scaffold_167-1510915933:1318447..1318867 | Clytia hemisphaerica | exon |
| TCONS_00049960-exon-scaffold_167-1575043694:1318447..1318867 | TCONS_00049960-exon-scaffold_167-1575043694:1318447..1318867 | Clytia hemisphaerica | exon |
| TCONS_00049960-exon-scaffold_167-1491911889:1319331..1320465 | TCONS_00049960-exon-scaffold_167-1491911889:1319331..1320465 | Clytia hemisphaerica | exon |
| TCONS_00049960-exon-scaffold_167-1510915933:1319331..1320465 | TCONS_00049960-exon-scaffold_167-1510915933:1319331..1320465 | Clytia hemisphaerica | exon |
| TCONS_00049960-exon-scaffold_167-1575043694:1319331..1320465 | TCONS_00049960-exon-scaffold_167-1575043694:1319331..1320465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1317386..1320465 + |
Blast
The following BLAST results are available for this feature:
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