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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049960 ID=TCONS_00049960|Name=TCONS_00049960|organism=Clytia hemisphaerica|type=transcript|length=1609bp GTGATCAATTATGATGTATGTGCTGGGACAGCTTTCAGCTTTCAAGGGGG CTGCATTATGTGGACGCATTCTTTCAACAACCGATCAGGCAGATGTCTCA AAAGATTCCAATGTGACCATTGAATGGACATTACTCCCTCTACACCAAGa aaaagctgattggttgacAATCTACCATCAGGCAGACGAGAACCAAATCA TTCAACCTATTTGGGATGATATCAAAGGAGTTACCAAATTTGGAAAACAG AAATTCAACGATAAAATGTCTATCAATGCTGgtcaaaaaaatcaagttgt gCTGCATGTTGAGGAGCTNTTCTATCAATGCTGGTCAAAACAACCAAGTT GTGCTGCATATTGTGGAGATTAAAGAATCAATGACGATTTATTTAACTGT AGTTTTCATCGATAAGAAAACTGGTGAAATTCAAGGTGGTCCATTGTact caaaaacaaatattttagtcTTTGaagctgacaaaatcaaaaatgataCT TTGGTTCAAAAGTTCACCGAGTTTTATCCCAAGTATGAAGTCTCATTCGA TATAAAACCAGTTAGTAGAGTATCTCAATGGGCGAATATTCTACACGTGA CTCAAGGAGGAGATAATGTCAACTACGGGGACAGAAACCCGGCAGTTTGG TTTTGGGGTAGCTCTTACAGACTTCATATATGTTCGGCTATTAATGGAGA TAAAACCCATTGCTACAACACTATCGCCGAACTACCAACTAACAGATACA CTCGTGTCAATATAAAACAGGACGAAGATGCGAACGGAGTTTTTTTCTTT GCAGTAAGATTAGGTGGTATAGAAGTGTATCGCATACAAAATAACCAGAC ACAAACTTTCCAGAATGTTAAATTTTATCAATCAAATCCATGGTATCCAC CTGCGAATGCTTTGATTGGAAACGTTAAAGTGACAACCATGAAATGCTAA AGATACGATTTATACTCgcttttttgtataaaaaccagtaaattttggct cacgctgggctgttcttaattttatgAAATGTTTGGGCTtacatgttctt acgatgttcttatgATGGGTTTCATTAATACGcttattttcttttccttg aaaacttaaaatgggtttaaaatcttttaaaaacagTATGTACAGTACTG TCTTAGTATTTTCTGAAATCTAAgtctcagattgttcttaatttgttctt aggttttggccaatgatcagcctcgtgttcttttaaaattgttcttgtaa aaaaagcgtATCCCAGACGGCACagaacgtcaaaacaacgtccatgtgaa attcataacgtccaaataacgttatttgaacgttaaaacgttgattgaag attttttaaataagcAATATAAATAGAAATATGTTTGAAATATATCATAC TCATACTTATCAAACCCTTAAAACGTGAAGAGACTAGGTTAGAGTTTAGA TACCAGGACCAGGAAGGGTTGACGTCAAAAGCTTATCTGTAAAAACATCA ACACAACGGCTTCAACTCTGGTTTGGACAATCCACTTTTTGCCGTGTCTA TTTAAATTGCTGGTCAGAAGTTGATTAATTgtccaacctcgttccctgcg cattatcag Run BLAST on NCBI protein sequence of TCONS_00049960-protein >TCONS_00049960-protein ID=TCONS_00049960-protein|Name=TCONS_00049960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MISKELPNLENRNSTIKCLSMLVKKIKLCCMLRSXSINAGQNNQVVLHIV EIKESMTIYLTVVFIDKKTGEIQGGPLYSKTNILVFEADKIKNDTLVQKF TEFYPKYEVSFDIKPVSRVSQWANILHVTQGGDNVNYGDRNPAVWFWGSS YRLHICSAINGDKTHCYNTIAELPTNRYTRVNIKQDEDANGVFFFAVRLG GIEVYRIQNNQTQTFQNVKFYQSNPWYPPANALIGNVKVTTMKC Run BLAST on NCBI transcript from alignment at scaffold_167:1317386..1320465+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049960 ID=TCONS_00049960|Name=TCONS_00049960|organism=Clytia hemisphaerica|type=transcript|length=3080bp|location=Sequence derived from alignment at scaffold_167:1317386..1320465+ (Clytia hemisphaerica) GTGATCAATTATGATGTATGTGCTGGGACAGCTTTCAGCTTTCAAGGGGG
CTGGTAATAAACTAGCTTTAATTACTTTAGTTCGCTTGTGTAGTGAATGA
ATGCTGAAAATAATTTGCGCTAAATCCCTTGCACCAAAAAAATTCCTATG
TAAGCTGTGTACTAGTCCTTTAGCAATTCGACCACGGAGATAACAGTTGA
GAGTTGTCTGTgcatttacacgctttttttataagaatacactttataag
aatgccaATGATGAAAAAGGCCGAAAAAGTTatgaataatgctaagaata
tcaccatcataggaTTTTGCTACtcaatgccatttttagagcattttcaa
tcataaattgtcaattacctccaagtaaggctcactcctttcacaaaaat
gcttttatgcttgagacgtatgtactaaatgttagatctagtctgaatta
ggatcctaacctaagaatgctataagaatattttaggatgattttctcaa
aaaagttaagaatatccatgatgaaatggatttacaccattcttataaaa
aaagcgtgtaagttGGCATTTGCctctaaattttctttttaggtAGGTAA
AACACCCTTCAAACAATGCAGgggaaaaagatttcaaatgGATCGTTCAT
ATCTTTTTTGCTCATAATTCTTTTGCAAAGAAATCATTACGGTAAGCTTA
ACATTCGGGGATCAGCCTTATTCTAGGCTTCGGCTCTTCCTCTAACGAAA
AGAGCTTCTTATATACATAGAGGTGTGCGATTTAGAATAGCCTCGTTCTT
GTACACCAAATGTCTTAATTATAGACCCATTGGCGGTTTTATACCCTGTC
AAACTTATCAGATGGAGAGATTTATAATtgtagtttcattgttttttaac
gagcgttgcactccttcgcatgtttccgacgtacttgttctattgtctta
aatccgccagtgtGCTTAAAACCCATTTTAAGGTCCCGCCCGCTGTAGAG
CTCATAttgtttcaactttttcgaaatttctacATTGGTATATAAACTCT
TTCTTCCAAAGCATTATGTGGACGCATTCTTTCAACAACCGATCAGGCAG
ATGTCTCAAAAGATTCCAATGTGACCATTGAATGGACATTACTCCCTCTA
CACCAAGaaaaagctgattggttgacAATCTACCATCAGGCAGACGAGAA
CCAAATCATTCAACCTATTTGGGATGATATCAAAGGAGTTACCAAATTTG
GAAAACAGAAATTCAACGATAAAATGTCTATCAATGCTGgtcaaaaaaat
caagttgtgCTGCATGTTGAGGAGCTNTTCTATCAATGCTGGTCAAAACA
ACCAAGTTGTGCTGCATATTGTGGAGATTAAAGAATCAATGACGATTTAT
TTAACTGTAGTTTTCATCGATAAGAAAACTGGTGAAATTCAAGGTGGTCC
ATTGTactcaaaaacaaatattttagtcTTTGGTAAGTTATATGAATAAG
TTCCCTCTGTCTTCCTTTCTAACTCTTATCTGCTATAAATGcaagaaaca
ttttaaaaggGTGAGAAAGAGCCTATTGTCAGCACTAAGTTAGAAATATC
TCTTTACTTTCAATAagttaactctctctaattcgaataaattaTTCGAA
TCTTACTTAAATTCGAATGAAAGTTTTGGTTCCTTGAAGATCAAATTAGA
GAACGGTAtctcacttttcaaaaatacctAAATAAGGGGCCTAGGGCGGG
TTTCTTCATTGTCAGAGCACTGAAATTTGCCCATGATATTGCTAAgaaaa
aaatgacgtaatcgaGATTGTTCCCTGAAGTTCTTGAACTTTTTTTGTCA
TANGCCATGATATTAAGAATGCTAAgaaaaaaatgacgtaatcttgattG
TTCCCTGAAGATCTTGAACTTTCTGTcgtattttgttgattttagaagct
gacaaaatcaaaaatgataCTTTGGTTCAAAAGTTCACCGAGTTTTATCC
CAAGTATGAAGTCTCATTCGATATAAAACCAGTTAGTAGAGTATCTCAAT
GGGCGAATATTCTACACGTGACTCAAGGAGGAGATAATGTCAACTACGGG
GACAGAAACCCGGCAGTTTGGTTTTGGGGTAGCTCTTACAGACTTCATAT
ATGTTCGGCTATTAATGGAGATAAAACCCATTGCTACAACACTATCGCCG
AACTACCAACTAACAGATACACTCGTGTCAATATAAAACAGGACGAAGAT
GCGAACGGAGTTTTTTTCTTTGCAGTAAGATTAGGTGGTATAGAAGTGTA
TCGCATACAAAATAACCAGACACAAACTTTCCAGAATGTTAAATTTTATC
AATCAAATCCATGGTATCCACCTGCGAATGCTTTGATTGGAAACGTTAAA
GTGACAACCATGAAATGCTAAAGATACGATTTATACTCgcttttttgtat
aaaaaccagtaaattttggctcacgctgggctgttcttaattttatgAAA
TGTTTGGGCTtacatgttcttacgatgttcttatgATGGGTTTCATTAAT
ACGcttattttcttttccttgaaaacttaaaatgggtttaaaatctttta
aaaacagTATGTACAGTACTGTCTTAGTATTTTCTGAAATCTAAgtctca
gattgttcttaatttgttcttaggttttggccaatgatcagcctcgtgtt
cttttaaaattgttcttgtaaaaaaagcgtATCCCAGACGGCACagaacg
tcaaaacaacgtccatgtgaaattcataacgtccaaataacgttatttga
acgttaaaacgttgattgaagattttttaaataagcAATATAAATAGAAA
TATGTTTGAAATATATCATACTCATACTTATCAAACCCTTAAAACGTGAA
GAGACTAGGTTAGAGTTTAGATACCAGGACCAGGAAGGGTTGACGTCAAA
AGCTTATCTGTAAAAACATCAACACAACGGCTTCAACTCTGGTTTGGACA
ATCCACTTTTTGCCGTGTCTATTTAAATTGCTGGTCAGAAGTTGATTAAT
Tgtccaacctcgttccctgcgcattatcag Coding sequence (CDS) from alignment at scaffold_167:1317386..1320465+ >TCONS_00049960 ID=TCONS_00049960|Name=TCONS_00049960|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_167:1317386..1320465+ (Clytia hemisphaerica) ATGATATCAAAGGAGTTACCAAATTTGGAAAACAGAAATTCAACGATAAA ATGTCTATCAATGCTGgtcaaaaaaatcaagttgtgCTGCATGTTGAGGA GCTNTTCTATCAATGCTGGTCAAAACAACCAAGTTGTGCTGCATATTGTG GAGATTAAAGAATCAATGACGATTTATTTAACTGTAGTTTTCATCGATAA GAAAACTGGTGAAATTCAAGGTGGTCCATTGTactcaaaaacaaatattt tagtcTTTGaagctgacaaaatcaaaaatgataCTTTGGTTCAAAAGTTC ACCGAGTTTTATCCCAAGTATGAAGTCTCATTCGATATAAAACCAGTTAG TAGAGTATCTCAATGGGCGAATATTCTACACGTGACTCAAGGAGGAGATA ATGTCAACTACGGGGACAGAAACCCGGCAGTTTGGTTTTGGGGTAGCTCT TACAGACTTCATATATGTTCGGCTATTAATGGAGATAAAACCCATTGCTA CAACACTATCGCCGAACTACCAACTAACAGATACACTCGTGTCAATATAA AACAGGACGAAGATGCGAACGGAGTTTTTTTCTTTGCAGTAAGATTAGGT GGTATAGAAGTGTATCGCATACAAAATAACCAGACACAAACTTTCCAGAA TGTTAAATTTTATCAATCAAATCCATGGTATCCACCTGCGAATGCTTTGA TTGGAAACGTTAAAGTGACAACCATGAAATGCTAAATGATATCAAAGGAG TTACCAAATTTGGAAAACAGAAATTCAACGATAAAATGTCTATCAATGCT GgtcaaaaaaatcaagttgtgCTGCATGTTGAGGAGCTNTTCTATCAATG CTGGTCAAAACAACCAAGTTGTGCTGCATATTGTGGAGATTAAAGAATCA ATGACGATTTATTTAACTGTAGTTTTCATCGATAAGAAAACTGGTGAAAT TCAAGGTGGTCCATTGTactcaaaaacaaatattttagtcTTTGaagctg acaaaatcaaaaatgataCTTTGGTTCAAAAGTTCACCGAGTTTTATCCC AAGTATGAAGTCTCATTCGATATAAAACCAGTTAGTAGAGTATCTCAATG GGCGAATATTCTACACGTGACTCAAGGAGGAGATAATGTCAACTACGGGG ACAGAAACCCGGCAGTTTGGTTTTGGGGTAGCTCTTACAGACTTCATATA TGTTCGGCTATTAATGGAGATAAAACCCATTGCTACAACACTATCGCCGA ACTACCAACTAACAGATACACTCGTGTCAATATAAAACAGGACGAAGATG CGAACGGAGTTTTTTTCTTTGCAGTAAGATTAGGTGGTATAGAAGTGTAT CGCATACAAAATAACCAGACACAAACTTTCCAGAATGTTAAATTTTATCA ATCAAATCCATGGTATCCACCTGCGAATGCTTTGATTGGAAACGTTAAAG TGACAACCATGAAATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049960-exon-scaffold_167-1491911889:1317386..1317438 | TCONS_00049960-exon-scaffold_167-1491911889:1317386..1317438 | Clytia hemisphaerica | exon |
TCONS_00049960-exon-scaffold_167-1510915933:1317386..1317438 | TCONS_00049960-exon-scaffold_167-1510915933:1317386..1317438 | Clytia hemisphaerica | exon |
TCONS_00049960-exon-scaffold_167-1575043694:1317386..1317438 | TCONS_00049960-exon-scaffold_167-1575043694:1317386..1317438 | Clytia hemisphaerica | exon |
TCONS_00049960-exon-scaffold_167-1491911889:1318447..1318867 | TCONS_00049960-exon-scaffold_167-1491911889:1318447..1318867 | Clytia hemisphaerica | exon |
TCONS_00049960-exon-scaffold_167-1510915933:1318447..1318867 | TCONS_00049960-exon-scaffold_167-1510915933:1318447..1318867 | Clytia hemisphaerica | exon |
TCONS_00049960-exon-scaffold_167-1575043694:1318447..1318867 | TCONS_00049960-exon-scaffold_167-1575043694:1318447..1318867 | Clytia hemisphaerica | exon |
TCONS_00049960-exon-scaffold_167-1491911889:1319331..1320465 | TCONS_00049960-exon-scaffold_167-1491911889:1319331..1320465 | Clytia hemisphaerica | exon |
TCONS_00049960-exon-scaffold_167-1510915933:1319331..1320465 | TCONS_00049960-exon-scaffold_167-1510915933:1319331..1320465 | Clytia hemisphaerica | exon |
TCONS_00049960-exon-scaffold_167-1575043694:1319331..1320465 | TCONS_00049960-exon-scaffold_167-1575043694:1319331..1320465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_167 | supercontig | scaffold_167:1317386..1320465 + |
Blast
The following BLAST results are available for this feature:
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