TCONS_00049889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049889
Unique NameTCONS_00049889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049889 ID=TCONS_00049889|Name=TCONS_00049889|organism=Clytia hemisphaerica|type=transcript|length=698bp
AAAGACATGTATCAGATTCCTGTTGAAGAACAGACTATTGGATATCGTGA
CTGACCAATTTTTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATC
GATCTTATCAACTAGAAAATGTGGAGCTTCAACTATACGTTCATTACACT
GACAAAACTGAGTTAAAGGAAATTTATGCTCAGAACGATATAAAAATGAT
GGAACCTTTAAAAATTGTTAGTGGAAACAAGGAAAATATTTGGTATTATT
ATAGAGGGAACAGTGGACCATCTCTGAATGATTTTCTTCATGAAACCTTT
AGAATTCGAAAAGATCTACGAAggtttcttttctttgtaaatCAAAATCC
TGTCAAACATTCACAAATTGACCTTTTTAGATGTAAAGAAATCAATTTAG
CAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAACCA
TTAGGTTTATCTAGAGTCGGTTCGATTATTATCAAATGCCCTAATACCGG
TTCAGTTTTCTGTAGTATACCCTTATCGCAATGGAAATTTTTTGTCGATC
TTGAAGATGTGTGCAATGAGattattaaaaaacatcaaaaacttttCTAT
ACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACCAT
CATAGAAAGCTTATTCATtagagaaaatgaaattttcgaaaacGTCGA
Run BLAST on NCBI

transcript from alignment at scaffold_167:408373..409070+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049889 ID=TCONS_00049889|Name=TCONS_00049889|organism=Clytia hemisphaerica|type=transcript|length=698bp|location=Sequence derived from alignment at scaffold_167:408373..409070+ (Clytia hemisphaerica)
AAAGACATGTATCAGATTCCTGTTGAAGAACAGACTATTGGATATCGTGA
CTGACCAATTTTTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATC
GATCTTATCAACTAGAAAATGTGGAGCTTCAACTATACGTTCATTACACT
GACAAAACTGAGTTAAAGGAAATTTATGCTCAGAACGATATAAAAATGAT
GGAACCTTTAAAAATTGTTAGTGGAAACAAGGAAAATATTTGGTATTATT
ATAGAGGGAACAGTGGACCATCTCTGAATGATTTTCTTCATGAAACCTTT
AGAATTCGAAAAGATCTACGAAggtttcttttctttgtaaatCAAAATCC
TGTCAAACATTCACAAATTGACCTTTTTAGATGTAAAGAAATCAATTTAG
CAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAACCA
TTAGGTTTATCTAGAGTCGGTTCGATTATTATCAAATGCCCTAATACCGG
TTCAGTTTTCTGTAGTATACCCTTATCGCAATGGAAATTTTTTGTCGATC
TTGAAGATGTGTGCAATGAGattattaaaaaacatcaaaaacttttCTAT
ACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACCAT
CATAGAAAGCTTATTCATtagagaaaatgaaattttcgaaaacGTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031630XLOC_031630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049889-exon-scaffold_167-1491911889:408373..409070TCONS_00049889-exon-scaffold_167-1491911889:408373..409070Clytia hemisphaericaexon
TCONS_00049889-exon-scaffold_167-1510915933:408373..409070TCONS_00049889-exon-scaffold_167-1510915933:408373..409070Clytia hemisphaericaexon
TCONS_00049889-exon-scaffold_167-1575043694:408373..409070TCONS_00049889-exon-scaffold_167-1575043694:408373..409070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:408373..409070 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.04017	1.94098	1.06729	0.573851	4.1436	1.91338	3.19819	3.58627	0.834728	0.60135	1.53907	0.599833	0.381284	0	0	1.45658	0.950218	0.991285	0	0.166983	1.8016	1.333	4.29276	5.56775	0.418871	0.88148	1.38836	0.788442	2.53711	2.04887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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