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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049886 ID=TCONS_00049886|Name=TCONS_00049886|organism=Clytia hemisphaerica|type=transcript|length=279bp
gaaaaagagaaaaagctTTTCGGATCTACTCCAAAGCTTGTTGAAAAACC
AGGCATCACCCTGGAAACAAAGTTAATAGATATTGGTGAAGAATTAATTG
AATTTGTTTCGCAGCCTTCCTCCACCAAATGTTTATTgtcatgaaaataa
tatttgtgTATCTTAAAGAGAAGTCATTTTAACAGTAAAggttttttgca
tgaaattgtTGTCTGTTTTTGATAAGTTTCTTCGTTGATCTGCGATAGCT
TTCTcttaattttccttgaaaaaataCGA Run BLAST on NCBI transcript from alignment at scaffold_167:405562..414962+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049886 ID=TCONS_00049886|Name=TCONS_00049886|organism=Clytia hemisphaerica|type=transcript|length=9401bp|location=Sequence derived from alignment at scaffold_167:405562..414962+ (Clytia hemisphaerica)
gaaaaagagaaaaagctTTTCGGATCTACTCCAAAGCTTGTTGAAAAACC
AGGCATCACCCTGGAAACGAAGTTAATAGATATTGGTGAAGAATTAATTG
AATTTGTTTCGCAATCTTCTTCCACCAAATGTTTATTGtcataaaataat
atttgtgtATCTTAAAGAGAAGTCATTTTGACAGTAAaggttttttgcat
aaaattgtGATCTACTGTTGATAAGTTTCTTCGTTGATCTGCGATAGCTT
TCTTTcaagtttctttgaaaaatcacCACATTTCTAAGAATAAAATTCCA
AAAGCTCTTTCAATACATTTGCGAGTTTCTAGATTTTTAAAACACTGGTA
ATGTTAATGCTATTAAACCATTTGAATCTTAACTTTTCTCTTTCTACGGC
TTTGGCTCCTATCAGAATCTTAATCAATATTAGTATAAATATCATTTTGA
ATCAACATCTGCAAATTATTAATTTTAATGATCCAGTGTGTCACCataaa
aacgaacaaatttattttataaagTAACCTCCTCAAAACTCATCATCTTA
ACTTTTTAATTGCAGTAAACATTCAAGAAGAAATGTTTACAATGAGTAAT
AACAATTTTTCCACACAATAACATTATCAATAACACTACCTACCATCAAG
TATGTTTCAATTGTcaaaaaaacctgatttttgaagccagaaCTTTCTTA
AAATTGCGGGAACCATGGCTttgcagcaggttttaggtgcccctaagaat
tcaggtgacccctaagatttaggtaacccctggttgccaaatattttagg
tgacccctaagccaatgacacgtcaaattttttcgaaaatcctttttaaa
caatcaaataaatacaacagttagtttagcttattgctgAATAAaataaa
tgccctaagaaatAAGTAAATGACACAGGATTAAAGAACttttacagatc
agtgccgtaggaagcattttcatattagtGTTGGGCTGAAGTTTCGTGAC
ACAGCGAGGACCAACCATGGTTTAGCGCGAATNCTGAATAAaataaatgc
cctaagaaatAAGTAAATGACACAGGATTAAAGAACttttacagatcagt
gccgtaggaagcattttcatattagtGTTGGGCTGAAGTTTTGTGACAca
gcgagggccaaccatggtttggcgcgaagggggaaattttgaaaatttga
gctctagattgcttgaaaatgcactcaaaacatgcacttataagacaatt
atgacaaataaaaaaagaaaaacttagcattttgcaaaataactattttt
gaaaaaattatttggggGCATACCCCCCTCCttgccccccagttgctacg
gcactgcagataatacattagataccaaattgtcagtttttgagcattgc
ttagattaaaatataagaagagaaagtgcaaaccctatggtctggtaggc
tgcttataattcaatcaccaaacatagaatctagcccccaggtccatctg
aaaaaacttaggtgacccctaacatggttagtcccccctagccacaggct
aaaatcaggtaccaattgctgctcgaccttttagcccccTCCTCCTCAGG
CCAgggggggttccagccatgCGGAACAATCCATTATCGCCtgaaaaaca
agttttcttgaatttctcgagctgtacttaatatttttcataaagttttg
aacaCTGATGCAAATTGGCAATATCTAAAATGTGACTGAGCATGATTCTC
AACAAACATACTTTTCCGGCCTAAattgccggaaatatgctggaaaacca
gtttttggcattttttagagatttcataatcagtttttatgatttttgca
caaagatgcgtattagcaatgtccaaaacatggttgatttggatttttga
gaaaaatattttccggtcGAAATGCTTGAAATATGGTGTTTCTTatttta
cttactttttttattaCCATTCTATATTAtttatcatcaggtaggtccaa
tatgCATTGTACTTGTTTACTTTTATTCCTATCNATAAATTGTTCtcctt
tttttcagaaaataaaaataaaaatgaaaaatcatttgACTGTGAATATT
GGCAACAATCCTCCCTCCATATTTTACTGGTGTGATGCAGATTCATATGa
caatttgaagaaaagtattgaaaaaCGTTATGAGATTCCAGCTTCATGTC
AAGGCATTGAACATCAAGGAATTATTTTGAACACAGAAACTTTTGAAGAA
CTTTATCAAAAACGATTGCAGTTTGATATTAAACTTGATGTTATTATTGA
TGATAGTACTGGTAACTTGATTGATTATACCTTAGTGCATACCCGTAGAA
ATCTTGCCTTGGAAAAAAGTTCAGGAATAAGGAATATAAAAATTATTGAT
TTATCTAGACACTTGTATCAATCCTGTCAAATTATTTATAAAGATTTGGA
TATCAATACAACGGTACTAGATCTGAAAAAAAGAGTTTATGCTgaaaaaa
ggataaaagaatCGACTAAcagaataaattttatttatgGTAAACTTATG
ATTCTCACAGACAATCAATTGTTGGTCGATTTATTCCTGGATGGATTCTT
AAAGTATACTCAATTCTCTTTCAATATCGTAGTTATCACAGTGGATGATT
GTATATTCGATATGTTTGAGAATGATGATGAAAATACTACAATCAATATC
AAATTCcgtgaaatcaaaatttcaatgcAAGGAATAGAAGCTATAAGGCA
AATCGGATATCCAATATTCGATATAGGTTCTTTTTATCCTGAGGACATAA
AAGTATGGATCAAAGACATGTATCAGATTCCTGTTGAAGAACAGACTATT
GGATATCGTGACTGACCAATTTTTACCGATAACGAAGACTTGTCACGTGT
CTGGCTCGATCGATCTTATCAACTAGAAAATGTGGAGCTTCAACTATACG
TTCATTACACTGACAAAACTGAGTTAAAGGAAATTTATGCTCAGAACGAT
ATAAAAATGATGGAACCTTTAAAAATTGTTAGTGGAAACAAGGAAAATAT
TTGGTATTATTATAGAGGGAACAGTGGACCATCTCTGAATGATTTTCTTC
ATGAAACCTTTAGAATTCGAAAAGATCTACGAAggtttcttttctttgta
aatCAAAATCCTGTCAAACATTCACAAATTGACCTTTTTAGATGTAAAGA
AATCAATTTAGCAATTCAAGTAGATGATGATGAAACAGACTTATTGAAAC
ACCTTGAACCATTAGGTTTATCTAGAGTCGGTTCGATTATTATCAAATGC
CCTAATACCGGTTCAGTTTTCTGTAGTATACCCTTATCGCAATGGAAATT
TTTTGTCGATCTTGAAGATGTGTGCAATGAGattattaaaaaacatcaaa
aacttttCTATACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGAC
AAAGATACCATCATAGAAAGCTTATTCATtagagaaaatgaaattttcga
aaacGTCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNttccccccccccccagttgctacggcactgcagataatacatta
gataccaaattgtcagtttttgagcattgcttagattaaaatataagaaG
AGAAAGTGCCAACCCTATGGTCTGGTAGGCTGCTTATAATTcaatcacca
aacatagaatctagccccAAGGTCCATCGGAAAAAaattaggtgacccct
aacccctagccacaggctaaaatcaggtaccaattgctgctcgacctttt
agccccctccccctcaggccagggggggggggttccagccatgCGGAACA
ATCCATTATCGCCTGAAAAACAAGTTtacttgaatttctcgagctgtact
taatatttttcataaagttttgaacaCTGATGCAAATTGGCAATATTTAA
AATGTGACTGATTCTCAACAAACATGCTTTTCCGGCCTAAAttaccggaa
atatgctggaaaaccagtttttggcattttttagagatttcatatcagtt
tttatgatttttgcacaaagatgcgtattagcaatgtccaaaacatggtt
gatttggatttttgagaaaaattttttccggtcgaaatgCTTGAAATATG
GTGTTTCTTattttacttactttttttattaCCATTCTATATCAtttatc
atcaggtaggtccaatatgCATTGTACTTGTTTACTTTTATTCCTATCTT
GAGATTTAAGCAATTAATTTGCTCAAAATTCAACTAATTCAGGCTGATGG
TTGTTCTTATATATTGTTCTtattatttgacatttttggagCCTAATAGT
TCTTATTGTGTTGTTCTTGTAAAAGAAGAAGAGTGTTTGTTAGGTATCAG
CTatctttttcttaaagatataaGCAATCACGACGCttgaaaatgataaa
caataaataaatcaatttttgtcctttttttctttcagagtaaaaataaa
aatgaaaaatcatttgACTGTGAATATTGGCAACAATCCTCCCTCCATAT
TTTACTGGTGTGATGCAGATTCATATGacaatttgaagaaaagtattgaa
aaaCGTTATGAGATTCCAGCTTCATGTCAAGGCATTGAACATCAAGGAAT
TATTTTGAACACAGAAACTTTTGAAGAACTTTATCAAAAACGATTGCAGT
TTGATATTAAACTTGATGTTATTATTGATGATAGTACTGGTAACTTGATT
GATTATACCTTAGTGCATACCCGTAGAAATCTTGCCTTGGAAAAAAGTTC
AGGAATAAGGAATATAAAAATTATTGATTTATCTAGACACTTGTATCAAT
CCTGTCAAATTATTTATAAAGATTTGGATATCAATACAACGGTACTAGAT
CTGAAAAAAAGAGTTTATGCTgaaaaaaggataaaagaatCGACTAAcag
aataaattttatttatgGTAAACTTATGATTCTCACAGACAATCAATTGT
TGGTCGATTTATTCCTGGATGGATTCTTAAAGTATACTCAATTCTCTTTC
AATATCGTAGTTATCACAGTGGATGATTGTATATTCGATATGTTTGAGAA
TGATGATGAAAATACTACAATCAATATCAAATTCcgtgaaatcaaaattt
caatgcAAGGAATAGAAGCTATAAGGCAAATCGGATATCCAATATTCGAT
ATAGGTTCTTTTTATCCTGAGGACATGAAAGTATGGATCAAAGACATGTA
TCAGATTCCTGTTGAAGAACAGACTATTGGATATCGTGACGGACCAATTT
TTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATCGATCTTATCAA
CTAGAAAATGTGGAGCTTCAACTATACGTTCATTACACTGACAAAACTGA
GTTAAAGGAAATTTATGCTCAGAACGATATAAAAATGATGGACCCTTTAA
AAATTGTTAGTGGAAACAAGGAAAATATTTGGTATTATTATAGAGGGAAC
AATGGACCATCTCTTAATGATTTTCTTCATGAAACCTTTGGAATTCGAAA
AGATCTACAAAggtttattttctttgtaaatCAAAATCCTGTCAAATATT
CAcaaattgacatttttagatttaaagaaaTCAGACTAGCAATTCAAGTA
GATGATGATGAAACAGACTTATTGAAACACCTTAAACCATTAGGTTTATC
TAGAGTCGGTTCAATTATTATTAAATGCCCTAATACCGGTTCAGTTTTCT
GTAGTTTACCCTTATCGCAATGGGAATCTTTTGTCGATCCTGAAGATGTG
TGCAATGAGATTATTAAAAAACATCGAGAACTTTTCTATACAAAAATTTG
GCTTGCACATGATGGTAACAAGTTAGGCAAAGATACTATCATAGAAAGCT
TATTTATcagagaaaatgaaattttggaaaacatCGAGTTAACCTTGTTC
GTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTTAGT
ATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACAATAG
ATTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGAACTCAAAAGAACA
ATCTATGAAATAAAAGACATTGCACCACATTTGCAATCACTGTTTTGTTA
CAAATTTAGTGATTTTCAGTTGGAAGGTtttatggaaatattttcacttt
taacAGATGTCAAAGAAAATGATTCGATTACTCTTAACTTGATTGTCAAA
CCAGCAAAAGAATTACAAGTAGTTATCAAATGTGCTGGACATCTTCACAG
TGAAACTATCGATTTAAATATGAAGGAAACAGATACAATTTCAGATATTA
AGAAGGAAGTATCAAAAATTACCAATCATCCGTCTTCCATTATATCAATC
CTAAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGAATATAGTTGGATT
TGATGACAATGACCAACTTTGGCATCTGAAACTTTCAGAAACCATTTCAA
TTAAATTATATGCAATGTTGCAGGTATTGGTTTCGATTAAAGCTGATTTA
ACCATCCACCAACGTTCATTTCGAATTACCAACTTCAAATCCAATAGAAT
CAGAAACATTGCACAAGTcttagaaaaagagaaaaagctTTTCGGGTCTA
CTCCAAAGATTGTTACGAAACCAGGCATCACCCTGGAAACAAAGTTAATA
GATATTGGTGAAGAATTAATTGAATTTGTTTCGCAGCCTTCCTCCACCAA
ATGTTTATTgtcatgaaaataatatttgtgTATCTTAAAGAGAAGTCATT
TTAACAGTAAAggttttttgcatgaaattgtTGTCTGTTTTTGATAAGTT
TCTTCGTTGATCTGCGATAGCTTTCTcttaattttccttgaaaaaataCG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049886-exon-scaffold_167-1491911889:405562..405613 | TCONS_00049886-exon-scaffold_167-1491911889:405562..405613 | Clytia hemisphaerica | exon |
| TCONS_00049886-exon-scaffold_167-1510915933:405562..405613 | TCONS_00049886-exon-scaffold_167-1510915933:405562..405613 | Clytia hemisphaerica | exon |
| TCONS_00049886-exon-scaffold_167-1575043694:405562..405613 | TCONS_00049886-exon-scaffold_167-1575043694:405562..405613 | Clytia hemisphaerica | exon |
| TCONS_00049886-exon-scaffold_167-1491911889:414736..414962 | TCONS_00049886-exon-scaffold_167-1491911889:414736..414962 | Clytia hemisphaerica | exon |
| TCONS_00049886-exon-scaffold_167-1510915933:414736..414962 | TCONS_00049886-exon-scaffold_167-1510915933:414736..414962 | Clytia hemisphaerica | exon |
| TCONS_00049886-exon-scaffold_167-1575043694:414736..414962 | TCONS_00049886-exon-scaffold_167-1575043694:414736..414962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:405562..414962 + |
Blast
The following BLAST results are available for this feature:
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