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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049885 ID=TCONS_00049885|Name=TCONS_00049885|organism=Clytia hemisphaerica|type=transcript|length=1984bp
TAAACGAGTACAGTTGAGAGTTTGCGACAAAGGTTGACTACAGCAATGGC
TCAAAGTTCTGTAAAATACTACAAAGACGAGCACATGCTGATTGATCCAG
AAGAAATGAAAGAAAGCGATGAAGACAACATATGGCATGAAAACCAGATG
ACCAGTAAAATGGTCATCAAAACGAAAATCGAAGAATACATCAACTCGTT
CAGTATCCACGGATTAACTCGAGTTTTCAAGGGCAACCGAAGAGAATCAA
tcttctggtctgtaattttacTCCTAACGACAATCTTTGTTGCAATCTCT
ATCCATAATTTGATAGCTGAGTACCATAAATATGATTATTACACTGAAAT
GAGAGATAAACTAACAAAGGAGCACGTCTTTCCAAGTATTACTATTTGTA
ATCAAGCTAAGTTAAGGGAAACACGTTTATCTTATTGTGGGAAACCATCT
TGGGAACACGGAAATAGAAGCATAATCTGTGATCAGGAGAATATTAAACC
CACTAAAGCAGAGTTTGAGGAAGTTGAACATGGAATTTGGACCAATGGTG
CTTTTAATATCTCGAATTGCCAAGCTTTAGCAACTGGACAGGATTGTCTA
AATAAATCGTTTTTCAAAGCGACTAGCTTTCTTGAGGATGCTTGTGTAAC
ATTCAATTATGACGGTCATTTACAAGATGCTTGGGCCTATATGAGTTTAT
CACAAAATCGCGACAATAGAGACGATTTAGCTCTTACTATTCACGAAACA
AATGTTAATCCACTGAAGAGTTTGGTTGATTCTAAAGTCATGTTACAACC
ATCACGAGAAGTAGAAATAACTTATGAGAAAATCGTCACCAAACGATTGC
CAAGTCCTTATCCATCAAATTGTGTAGCTGACAAAGGTGAAGATATCTTA
CCTGGAAAATATGCTCGAGTTGGATGTTTGAAATCGAATCTAGATATCAA
GATCTTCAAAGAGTGTGGAGATTGTTATGATTTTGACCGACAATTCATTC
CTgaggaaacaaaagaaaagtacaGCCGCCAACAATCTATAGCTGAGGCT
ATTGGTTGTATTCATAGATTCAACAGAATGAATATGTCTGTTCCAGATTG
CCCAAAACCATGTGACGAAATCAGATATGACACTGCGCTTGTACTATTTG
GAGGACNCAAAACCATGTGACGAAATCAGATATGACACTTCGCTTGTACT
ATTTGGAGGAGAACAAAGTGATTTTGATTATTCTGGTGATGTTGGTCCAA
TAAGATATTGGCTTCATGTCAGAAGTAAAATCTTTGACGAGCAcaaagaa
tttgaagaaaagcCTATTTACACTGTTTCTCAATTGTTCAGTAGGATTGG
AGCAATCTTGGTCTTTTGTATTGGAGCATCCATCATCTCTTTTGTAGAGA
TCATAGTTTATTTGGTTTTACTGGCTGTTCATAAATGTATTTAAAAGACA
ATGCAGTTTGAAAGAACAGTGTACTATTAAACGCtaaatatgtaatagtt
atcagacatttgcgaGTTCCGCGATTTTCCCGTACAATATTTTAccagcc
tttaggcgaggaaaatatacggaaaatccggaacgagtgaaatatttcca
tattgtacgagcaaatgtctgataactggtttatcggtgacccaaaaaat
gcactttttgttttggaaaaaaacgcagagcacttttgtagcaaagtgac
gttagattgctgctaccgctacaatacaacaacatctttttgttaattta
tatttttacatgtaaaatacaagatatattgtactctttttaaccaatca
gactGCAGATAtattttggatcgccgataatgCCAAATACactattttta
taagcatacggaaAAATCGGGTTGAGGCTCAATATGattagcaaaatctc
atttttagccttaatttatgcttattcgTTTAGAAAAGCTGCACGATTTT
TTTTGCGTTTCGGCTTGGAGGTATGAttagcatt Run BLAST on NCBI protein sequence of TCONS_00049885-protein >TCONS_00049885-protein ID=TCONS_00049885-protein|Name=TCONS_00049885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
MAQSSVKYYKDEHMLIDPEEMKESDEDNIWHENQMTSKMVIKTKIEEYIN
SFSIHGLTRVFKGNRRESIFWSVILLLTTIFVAISIHNLIAEYHKYDYYT
EMRDKLTKEHVFPSITICNQAKLRETRLSYCGKPSWEHGNRSIICDQENI
KPTKAEFEEVEHGIWTNGAFNISNCQALATGQDCLNKSFFKATSFLEDAC
VTFNYDGHLQDAWAYMSLSQNRDNRDDLALTIHETNVNPLKSLVDSKVML
QPSREVEITYEKIVTKRLPSPYPSNCVADKGEDILPGKYARVGCLKSNLD
IKIFKECGDCYDFDRQFIPEETKEKYSRQQSIAEAIGCIHRFNRMNMSVP
DCPKPCDEIRYDTALVLFGGXKTM Run BLAST on NCBI transcript from alignment at scaffold_167:366863..369339+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049885 ID=TCONS_00049885|Name=TCONS_00049885|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at scaffold_167:366863..369339+ (Clytia hemisphaerica)
TAAACGAGTACAGTTGAGAGTTTGCGACAAAGGTTGACTACAGCAATGGC
TCAAAGTTCTGGTAAGATTCGATTATAATCCACTGGATAAAAGCTTATAG
TATCTTTGCTGGGCGAACTCACAAAGTTAAAATCTAAGACTGCTAATTGC
AGAATTAGCCAGTACTTTGACCTCTATAAATGAATGTTTTTTTGCATATC
TAACGCAAACTTTGAAGCTTTATCACTATCAATCAAAGATAAAATGAAAG
TAgatgttttttaaaaaagcaTACAGCTTTTACCGGGGTTATACTAGGTT
TGTGAGGTGACGGGATGTCTTAGCCAAAGCTAGGAAATCTAACCGCCTGT
AAGAGagtaaatttcgaaaatttcgaCTCTTTTGTAACGTTTTTACGGCC
CTGAGCGAGCCTATTTTGCAACTTTCAGCcgaaatcttcaaattttgata
aacattttacgagaattTATAACCCTGTAAGAGGTTCAATTGCTGCTTTA
TGTATGTATACAAAAATTACCAACTAACCTTCGATTCTTATTTCTTATAC
ATAGTAAAATACTACAAAGACGAGCACATGCTGATTGATCCAGAAGAAAT
GAAAGAAAGCGATGAAGACAACATATGGCATGAAAACCAGATGACCAGTA
AAATGGTCATCAAAACGAAAATCGAAGAATACATCAACTCGTTCAGTATC
CACGGATTAACTCGAGTTTTCAAGGGCAACCGAAGAGAATCAAtcttctg
gtctgtaattttacTCCTAACGACAATCTTTGTTGCAATCTCTATCCATA
ATTTGATAGCTGAGTACCATAAATATGATTATTACACTGAAATGAGAGAT
AAACTAACAAAGGAGCACGTCTTTCCAAGTATTACTATTTGTAATCAAGC
TAAGTTAAGGGAAACACGTTTATCTTATTGTGGGAAACCATCTTGGGAAC
ACGGAAATAGAAGCATAATCTGTGATCAGGAGAATATTAAACCCACTAAA
GCAGAGTTTGAGGAAGTTGAACATGGAATTTGGACCAATGGTGCTTTTAA
TATCTCGAATTGCCAAGCTTTAGCAACTGGACAGGATTGTCTAAATAAAT
CGTTTTTCAAAGCGACTAGCTTTCTTGAGGATGCTTGTGTAACATTCAAT
TATGACGGTCATTTACAAGATGCTTGGGCCTATATGAGTTTATCACAAAA
TCGCGACAATAGAGACGATTTAGCTCTTACTATTCACGAAACAAATGTTA
ATCCACTGAAGAGTTTGGTTGATTCTAAAGTCATGTTACAACCATCACGA
GAAGTAGAAATAACTTATGAGAAAATCGTCACCAAACGATTGCCAAGTCC
TTATCCATCAAATTGTGTAGCTGACAAAGGTGAAGATATCTTACCTGGAA
AATATGCTCGAGTTGGATGTTTGAAATCGAATCTAGATATCAAGATCTTC
AAAGAGTGTGGAGATTGTTATGATTTTGACCGACAATTCATTCCTgagga
aacaaaagaaaagtacaGCCGCCAACAATCTATAGCTGAGGCTATTGGTT
GTATTCATAGATTCAACAGAATGAATATGTCTGTTCCAGATTGCCCAAAA
CCATGTGACGAAATCAGATATGACACTGCGCTTGTACTATTTGGAGGACN
CAAAACCATGTGACGAAATCAGATATGACACTTCGCTTGTACTATTTGGA
GGAGAACAAAGTGATTTTGATTATTCTGGTGATGTTGGTCCAATAAGATA
TTGGCTTCATGTCAGAAGTAAAATCTTTGACGAGCAcaaagaatttgaag
aaaagcCTATTTACACTGTTTCTCAATTGTTCAGTAGGATTGGAGCAATC
TTGGTCTTTTGTATTGGAGCATCCATCATCTCTTTTGTAGAGATCATAGT
TTATTTGGTTTTACTGGCTGTTCATAAATGTATTTAAAAGACAATGCAGT
TTGAAAGAACAGTGTACTATTAAACGCtaaatatgtaatagttatcagac
atttgcgaGTTCCGCGATTTTCCCGTACAATATTTTAccagcctttaggc
gaggaaaatatacggaaaatccggaacgagtgaaatatttccatattgta
cgagcaaatgtctgataactggtttatcggtgacccaaaaaatgcacttt
ttgttttggaaaaaaacgcagagcacttttgtagcaaagtgacgttagat
tgctgctaccgctacaatacaacaacatctttttgttaatttatattttt
acatgtaaaatacaagatatattgtactctttttaaccaatcagactGCA
GATAtattttggatcgccgataatgCCAAATACactatttttataagcat
acggaaAAATCGGGTTGAGGCTCAATATGattagcaaaatctcattttta
gccttaatttatgcttattcgTTTAGAAAAGCTGCACGATTTTTTTTGCG
TTTCGGCTTGGAGGTATGAttagcatt Coding sequence (CDS) from alignment at scaffold_167:366863..369339+ >TCONS_00049885 ID=TCONS_00049885|Name=TCONS_00049885|organism=Clytia hemisphaerica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_167:366863..369339+ (Clytia hemisphaerica)
ATGGCTCAAAGTTCTGTAAAATACTACAAAGACGAGCACATGCTGATTGA
TCCAGAAGAAATGAAAGAAAGCGATGAAGACAACATATGGCATGAAAACC
AGATGACCAGTAAAATGGTCATCAAAACGAAAATCGAAGAATACATCAAC
TCGTTCAGTATCCACGGATTAACTCGAGTTTTCAAGGGCAACCGAAGAGA
ATCAAtcttctggtctgtaattttacTCCTAACGACAATCTTTGTTGCAA
TCTCTATCCATAATTTGATAGCTGAGTACCATAAATATGATTATTACACT
GAAATGAGAGATAAACTAACAAAGGAGCACGTCTTTCCAAGTATTACTAT
TTGTAATCAAGCTAAGTTAAGGGAAACACGTTTATCTTATTGTGGGAAAC
CATCTTGGGAACACGGAAATAGAAGCATAATCTGTGATCAGGAGAATATT
AAACCCACTAAAGCAGAGTTTGAGGAAGTTGAACATGGAATTTGGACCAA
TGGTGCTTTTAATATCTCGAATTGCCAAGCTTTAGCAACTGGACAGGATT
GTCTAAATAAATCGTTTTTCAAAGCGACTAGCTTTCTTGAGGATGCTTGT
GTAACATTCAATTATGACGGTCATTTACAAGATGCTTGGGCCTATATGAG
TTTATCACAAAATCGCGACAATAGAGACGATTTAGCTCTTACTATTCACG
AAACAAATGTTAATCCACTGAAGAGTTTGGTTGATTCTAAAGTCATGTTA
CAACCATCACGAGAAGTAGAAATAACTTATGAGAAAATCGTCACCAAACG
ATTGCCAAGTCCTTATCCATCAAATTGTGTAGCTGACAAAGGTGAAGATA
TCTTACCTGGAAAATATGCTCGAGTTGGATGTTTGAAATCGAATCTAGAT
ATCAAGATCTTCAAAGAGTGTGGAGATTGTTATGATTTTGACCGACAATT
CATTCCTgaggaaacaaaagaaaagtacaGCCGCCAACAATCTATAGCTG
AGGCTATTGGTTGTATTCATAGATTCAACAGAATGAATATGTCTGTTCCA
GATTGCCCAAAACCATGTGACGAAATCAGATATGACACTGCGCTTGTACT
ATTTGGAGGACNCAAAACCATGTGAATGGCTCAAAGTTCTGTAAAATACT
ACAAAGACGAGCACATGCTGATTGATCCAGAAGAAATGAAAGAAAGCGAT
GAAGACAACATATGGCATGAAAACCAGATGACCAGTAAAATGGTCATCAA
AACGAAAATCGAAGAATACATCAACTCGTTCAGTATCCACGGATTAACTC
GAGTTTTCAAGGGCAACCGAAGAGAATCAAtcttctggtctgtaatttta
cTCCTAACGACAATCTTTGTTGCAATCTCTATCCATAATTTGATAGCTGA
GTACCATAAATATGATTATTACACTGAAATGAGAGATAAACTAACAAAGG
AGCACGTCTTTCCAAGTATTACTATTTGTAATCAAGCTAAGTTAAGGGAA
ACACGTTTATCTTATTGTGGGAAACCATCTTGGGAACACGGAAATAGAAG
CATAATCTGTGATCAGGAGAATATTAAACCCACTAAAGCAGAGTTTGAGG
AAGTTGAACATGGAATTTGGACCAATGGTGCTTTTAATATCTCGAATTGC
CAAGCTTTAGCAACTGGACAGGATTGTCTAAATAAATCGTTTTTCAAAGC
GACTAGCTTTCTTGAGGATGCTTGTGTAACATTCAATTATGACGGTCATT
TACAAGATGCTTGGGCCTATATGAGTTTATCACAAAATCGCGACAATAGA
GACGATTTAGCTCTTACTATTCACGAAACAAATGTTAATCCACTGAAGAG
TTTGGTTGATTCTAAAGTCATGTTACAACCATCACGAGAAGTAGAAATAA
CTTATGAGAAAATCGTCACCAAACGATTGCCAAGTCCTTATCCATCAAAT
TGTGTAGCTGACAAAGGTGAAGATATCTTACCTGGAAAATATGCTCGAGT
TGGATGTTTGAAATCGAATCTAGATATCAAGATCTTCAAAGAGTGTGGAG
ATTGTTATGATTTTGACCGACAATTCATTCCTgaggaaacaaaagaaaag
tacaGCCGCCAACAATCTATAGCTGAGGCTATTGGTTGTATTCATAGATT
CAACAGAATGAATATGTCTGTTCCAGATTGCCCAAAACCATGTGACGAAA
TCAGATATGACACTGCGCTTGTACTATTTGGAGGACNCAAAACCATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049885-exon-scaffold_167-1491911889:366863..366923 | TCONS_00049885-exon-scaffold_167-1491911889:366863..366923 | Clytia hemisphaerica | exon |
| TCONS_00049885-exon-scaffold_167-1510915933:366863..366923 | TCONS_00049885-exon-scaffold_167-1510915933:366863..366923 | Clytia hemisphaerica | exon |
| TCONS_00049885-exon-scaffold_167-1575043694:366863..366923 | TCONS_00049885-exon-scaffold_167-1575043694:366863..366923 | Clytia hemisphaerica | exon |
| TCONS_00049885-exon-scaffold_167-1491911889:367417..369339 | TCONS_00049885-exon-scaffold_167-1491911889:367417..369339 | Clytia hemisphaerica | exon |
| TCONS_00049885-exon-scaffold_167-1510915933:367417..369339 | TCONS_00049885-exon-scaffold_167-1510915933:367417..369339 | Clytia hemisphaerica | exon |
| TCONS_00049885-exon-scaffold_167-1575043694:367417..369339 | TCONS_00049885-exon-scaffold_167-1575043694:367417..369339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:366863..369339 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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