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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049882 ID=TCONS_00049882|Name=TCONS_00049882|organism=Clytia hemisphaerica|type=transcript|length=1852bp
atttgaatatcaatttgcaaaaataattattcatcAAATGCATTGCACAT
TGGCATACTATATGGGAcattgaaaatgatgatgagAGATATTACTGACT
GTGGTGTATCTTTTTGTCATGGTTAACTGTTTCTACAATTTGATTGACTT
CTGGAAAGGTCTTTTCAAAAATAGTGAAACTAAAGGaaatccaCGCACCG
ACAGTATGAACGGGTCGGCAAACAATTACGGCGTGCGGAACGGGAATGGC
CGGTTGGAATTAGAATTACTGGAGAATATACATGAAAAAAATCGAAGTGA
GGGGTTCACATACGTCGATCGATCGTTACTCGAACAAAACAACAATAGCA
AGTTAAACGATGACGAAGATAATTATTGGCACGAAATTCAATTAAATCGT
AAAATGatcatcaaaaagaaaattgaagaatacGTTAATACGTTCACGGT
TCACGGGCTCACGAAAGTATTCACGGGTGAAAGAGTTGAGTCTGCATTTT
GGCTGGTCATGCTTTTTGGTGGTATATTATTATCAGTTGTCATTGTGCAT
GGGCTTGTtacaaaattcttaaaacatgGAATTTACACGGAAATTCGGTC
TGAGATTACAGACGAGAATTTTTTCCCGAGTGTAACATTTTGCGAGAATC
AGCTACTGATTGATAACTATTTTTCGTACTGTGGCGTTCCGCCTAGAGTT
CAACATATCAACCATACAGTGGTTTGTGACTACAAAATGAAATACCGCCA
AGCGCCCATGAATGAATCTCGAAATAAATTCTGGTATAACGGTTTATTTA
ACGTTACAAAATGTGAAACCTGGGGAGGTAAGAAATGCGCCAATAGtgat
tatttcaaaactatgaaaCATTTTAATCATTCATGCATCACTTGGAATTA
TGCTGGTAATTTAAGTGATATTTATAGTCATGTTGACATCGAGTTTGAGT
TTAAGCCACCATCTTGGCTTAACAAAGATGAGGTCATAATCGCTGTACCA
CATGATCATACAATACATGAAATTGATATTACCAACAAAGTGGACATCGA
ACCATATAAAACATATGAAATCAAATTAGACAAaacagaaatcaaaagac
tACCACACCCTTTTCCCTCTAACTGCTCTAATAGCAAAGGAGAGGATATT
TTTCCTGGTAGATATACACGACGCTCGTGTATTGAATCTCACAACTATAT
CGAAATGTATAAAAAATGTGGGGACACTTTGGATTACGTACGCCAGTTTA
TTCCACACGCCATTAAGAAGCGTTACAAAGGGAATAAAACCATTAAAGAA
GCAGAAATGTGTATTTGGAGATTTGGGAAAGGAGAAACACAAAAAACCAA
AAACTGTGCTTTCCCCTGTACTGATTTAGACTTAGGGGTGATGCCCTCAT
TTAACGAACGCAAAAAGGGTAAATCGCAGACCAAATACCGTATAAGTTTA
CAATACCAACGGGTTGACGCTTATAAGGTTATGGAAGAGAAAGAGCTATA
TCCTTGGGACCAAATGGCATGTGAAATTGGAGGTCTTATCGGGTTGGCTA
TTGGTGCATCCATAATTTCTTTGGTAGAGGTTATAGTGTACGCATTTTTG
GTGATTGTTAATAAAGTGATCTGAGGAAAATTAGCCGCTAACAAAGGCAT
TTAACTAATATGAACAAAACGATATAGCAAAAACGACCTTTTGGAAGGAA
AATAGGAGCTgaagaaatttccaaattctTTTGGAAAAGTCCTGCGTCAT
AAATTGatactagccgtcccggcgtcgtccgagacgacttcttactcctt
ttaatacgctcgcttcgctcgcttttctatttttcagaaacttgtaggga
TT Run BLAST on NCBI transcript from alignment at scaffold_167:351914..359997+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049882 ID=TCONS_00049882|Name=TCONS_00049882|organism=Clytia hemisphaerica|type=transcript|length=8084bp|location=Sequence derived from alignment at scaffold_167:351914..359997+ (Clytia hemisphaerica)
atttgaatatcaatttgcaaaaataattattcatcAAATGCATTGCACAT
TGGCATACTATATGGGAcattgaaaatgatgatgagAGATATTACTGACT
GTGGTGTATCTTTTTGTCATGGTTAACTGTTTCTACAATTTGATTGACTT
CTGGAAAGGTCTTTTCAAAAATAGTGAAACTAAAGGGTAAGGatgtgatt
gattgattgattgattgatcgatCGATCGATTGATTGATTATAGCTTATA
TCTAATCCTGAACAAACTAACGACTTANTGATTGATTATTTGTATGACAC
TAGTCTATATCTAAGCCTGAAGAAACTAACTAACGACTTATTTAAATAAC
ACTGTGTTAGACAGAAAACATTTTTGGTCAACAGTTTTGCATACCCCCTC
AGTAGCGTTGCCAGGGGATGTCAGAAAATTTATGTAGGAGAGACAAAGTA
ACTAACTATTcataatttaaaagaaaattacttCGTAACAAAAGtgtgct
ctcctacacaaatttccGACATCCCTGAGAACGCTACTGCCCCTACCATA
GACAACAAACTAACCTTCCTATTCAAAACCATCAATGTATGAATCGAATT
CGTACATATTCGAACATGGGGATATCACACACAATCTGTAAACATATATT
CATCCAAATTCGggatgaaaaaattgtaaacattttataaatcaaaaaca
atATATTCAAGTGGAATTGATAATAAATTTTCTGACTCACCACGGGGTAA
ATTCACAATCTATCAGAATACCAATTTTCATCAATTTAAATAAATTCATC
GTCTGTAAAGTATTAAAATTTATTCCTTTGTAACATCACTCAAAAACAga
gtgaaatgaaaaaatagtttatagtattatttcaggATAATGTTTGATAA
ACATTAAAACCGAAATAAAATCGTAAATATGGTATGTTTCGGTTGCAATT
ATTGCAATCATTAAAACTGTTTACGAATTtactttcttattttttttaga
aatccaCGCACCGACAGTATGAACGGGTCGGCAAACAATTACGGCGTGCG
GAACGGGAATGGCCGGTTGGAATTAGAATTACTGGAGAATATACATGAAA
AAAATCGAAGTGAGGGTAAGATGTTGTTTTCGTATACCAGATATGTTTTT
TGGTAGAAATCGAGTAGAATCTTTAGGTATCGAAAAATGATTTTCTGAGT
TTCCGTTAATGTTGGAGAAAATTTAGACCTTAGCTCCGGTTAAGACTGCC
GACTTTCTGCTCTGTCTTCTTTTCCAAATGTTAGAGTTGATAGAAAGTGG
GcagaaaatttgaagtcagaaTCTCTGCTTGAAAAGGATTCAAAGaaatc
attgcattgacgtcaaaagagtacaatgcattgactttagacagccaact
ttctgcccactTTAATGAACAATTAAAATAGGCAGGGCAAAACGTGAGTC
CTTTATACCAGAGCTTACTTTCCAAGACAAACAAAAAACCGTATTTAATT
TCCGAATTCATTTATCTTGGTAGAGGGGAAGTAGAGCGAAGTGACACAAT
TTCAATTAAGCTTGATATCAAAATATTTGGCTAAAACATAATCAGTTTTG
GGAAAATTTACGTTTCGAATATATCATTAAACATTCTGGAGTCATAGACC
TAATTTAAACGGCCAACTTTCTGTCTCCGTTCGCTGTGAGAGACGGCAGA
AGATCGACGGAAAATCGGCAGTTGAAATCTTTGCTTGGGAAAactgaaag
aagtcattgcattgacgacAAAAGACATCGCATTGgctttagacagccaa
ctttcTGCCGACTTTGTCAAAAATGAGGGAAGGCAAGGCATTAAGTcaac
cgtctaaactagagctaagttgATGTCATGAAAGGGTTAAGTGATATCCA
TTTTCCCAGATTTCCCAGGGTCTATCTGAACGTTATCACCATAGATTtaa
aaagcccgaagggctagatgtcgggctttaaaccatcgcaggcaaaaaaa
aagtgaatatcggaaaaaatatttttgccattgttttcgaaaaccagcga
agcttctgattgataaagcgctgaaattttattgtaatgtttcgtgactt
aggtaggatttcctacctaactacggcacacttttcagcaaaagcttgAC
ATCtatagccctttgggcttataAGTCTATGGTTATCACTCAATTTTTTA
CTATGTATCTATATTTGCTTTCATAGGGTTCACATACGTCGATCGATCGT
TACTCGAACAAAACAACAATAGCAAGTTAAACGATGACGAAGATAATTAT
TGGCACGAAATTCAATTAAATCGTAAAATGatcatcaaaaagaaaattga
agaatacGTTAATACGTTCACGGTTCACGGGCTCACGAAAGTATTCACGG
GTGAAAGAGTTGAGTCTGCATTTTGGCTGGTCATGCTTTTTGGTGGTATA
TTATTATCAGTTGTCATTGTGCATGGGCTTGTtacaaaattcttaaaaca
tgGAATTTACACGGAAATTCGGTCTGAGATTACAGACGAGAATTTTTTCC
CGAGTGTAACATTTTGCGAGAATCAGCTACTGATTGATAACTATTTTTCG
TACTGTGGCGTTCCGCCTAGAGTTCAACATATCAACCATACAGTGGTTTG
TGACTACAAAATGAAATACCGCCAAGCGCCCATGAATGAATCTCGAAATA
AATTCTGGTATAACGGTTTATTTAACGTTACAAAATGTGAAACCTGGGGA
GGTAAGAAATGCGCCAATAGtgattatttcaaaactatgaaaCATTTTAA
TCATTCATGCATCACTTGGAATTATGCTGGTAATTTAAGTGATATTTATA
GTCATGTTGACATCGAGTTTGAGTTTAAGCCACCATCTTGGCTTAACAAA
GATGAGGTCATAATCGCTGTACCACATGATCATACAATACATGAAATTGA
TATTACCAACAAAGTGGACATCGAACCATATAAAACATATGAAATCAAAT
TAGACAAaacagaaatcaaaagactACCACACCCTTTTCCCTCTAACTGC
TCTAATAGCAAAGGAGAGGATATTTTTCCTGGTAGATATACACGACGCTC
GTGTATTGAATCTCACAACTATATCGAAATGTATAAAAAATGTGGGGACA
CTTTGGATTACGTACGCCAGTTTATTCCACACGCCATTAAGAAGCGTTAC
AAAGGGAATAAAACCATTAAAGAAGCAGAAATGTGTATTTGGAGATTTGG
GAAAGGAGAAACACAAAAAACCAAAAACTGTGCTTTCCCCTGTACTGATT
TAGACTTAGGGGTGATGCCCTCATTTAACGAACGCAAAAAGGGTAAATCG
CAGACCAAATACCGTATAAGTTTACAATACCAACGGGTTGACGCTTATAA
GGTTATGGAAGAAAAAGAGCTCTACCCTTGGGACCAAATGGCATGTGAGA
TTGGAGGTCTTATCGGGTTGGTTATTGGTGCATCCATAATTTCTTTGGTA
GAGATTATAGCGTACGTATTTTTGGTGATTgttaataaatttatttgacg
GAAATGGAAGAGTAGAAACACCAGTatgatggttttggtgatttAAGATA
CGGTGAGAAACGTATAAATGTGCCACGAATAGATGAAACTAAAAGCCTTG
GTTGAATGCCATGCAAACGATTTGAGTTAGTAACTTGCTCATCTAATGTC
GTCTTTTATCAGGCATTAGTTTAGCAAGTCGAAAAATACGAAAAAGGTAA
AAGAAGcgaaaaatatgtacaaagaaaagtGGATAAAGAGATGTACTCTT
TTGAAATGCGATGCAATCTGGTTAAATTCATTGAAAGAAGATGTACTACT
TGATTGATGTTCTCAATTAATATAAGCAAAAAGAAACTAAGTTGGTGGGT
TGAATTGCTttaacaaaaattggaaaataatcCAAGAGACCTACCTTGAA
GTCTAGCAAAATATGATATGGTATTATCACAAAAGTAAGACTCGCCAAAA
AACAGTACAATGCTAAATtatattttgaacaaaaaatatgattGAAAATA
TATGACGATATACATGGCTTTTGGAAGGGGAAACCAAAAACTCAATAACT
TATCAAATTTAAGTTTTCTGGACTAATACTTAATGCAATGGAAAAAgttt
ttcgaattttgtttattcatgatatgcaccactgcaatgacaaaattatg
caacttttctgtttttgttccagccaacacgtcactttttctattgttta
agtgacagaagactctccagtcgtggtgcatatcatgaatagatttaCAT
CACTTGTGCGAAGGTCTACCTTTCTTGCACTCAATAGAGTGTAACATTCT
AGTACTTGAAAGCTTCATGTAGTTCTTCTTTCANAGGTCTACCTTTCTTG
CACTCATTAGAGTGTAACATTCTACTACTTGAAAGCTTCATGTAGTTCTT
CTTTCAACAGTCATgtatgaatatttttatttcataataAGAAGAatctt
tgtatatttttacgTCTGGTAAAACTTCATAACAAGaaaatctcgcgaaa
atttagtttttaccCTTAAAAGAACTGATCTTCGCGGGAACgaattttcg
cgtttttgggtgTGTCTACCGTAAAAATTAGGTcagcgaaatgcaatttt
tactatTAATTCTCGAAAGGTccaggaaaatgaaagaatttcgaCAAAAA
GTGGGTGTCAACCGCGAAAATCAGTTCAGCAAAAAACGCAAATTTCGTAC
CCTCACACCGCCAAAATAAGTTAGCGAGAAAATTAGTGTCCTTAAGGTAT
TTCATATGACATAATGGAATTTTCTTATGTTAATTTGAATGCGGTGAAGT
GAATTTTGACCGACGTTTGTCGAAATATCGATGAAATTTATCAACTAAAT
CCAGCATAGGTGCGAAGTTTTCTTGGGATAAAGTTTTAAGTAAAAGAcac
taaaaattttatttttaaaacttaattttcttaTAGGAAAAATACGGTAG
ATCTAGTGTGATTTTCATAAAATAGTATAGAGAAAAGTTGAGGGCGAAAA
TCATTTCAAATCCAGCCTTGAGTTTATCATTTCTTTAATGTTTTTACACA
GAACTTAGTTTGAACACTTCCTTTATAAAGGAAGGATATGAGCTAGCATG
AAGATGGGGATGAGAAATTTTACTAAGGAAAGGAGGACAACAAGGGGGCC
TAAGAAACGGTTGACATCGAGTCCTCTTTTATTTGTTCAGGATTCTGTAC
TTGCCTGGAAATTTCCGTTTCTAGagaaattttagtgttttttgaTTACG
ATAAGAAACTAAGGCTTCAATGGCTAAAAAAagaagctaagaacatttta
atgctttGTGGACTTTTAAAACACCAGATTTCTTAGAAGAATGGACAATA
TTCAAATATCATATACAAATTATTCatcaaatggtgaaaataagaacatg
ttaagaacatttttaggtttaaaagccaaaaaattaagaacatccgaagg
cttaaaattttttggatattcttataaaaaaagtgtataaatAAGTTTAG
AGTGATGGTAGCAAGGTAACTCAGTATTTTGGAGGTGTCAAGGCGTGAGT
TTAAAAGGGGCTCAAACATAAATCATAATTTGCAGATTTGCAGATGGTGC
AATTTCATAGCAGTGATCGAAGCTCCTCCATATAATTATCTTTATTCCCT
TTCTTTACAAAGTCAATCCTTTTATCGGCTTACAGTAGGTTTTATCAATG
ATGATGATATTAATTTTAATACCCTTTCAAATTGCCTACTTAAAGTGAAA
ACGAGGACTTTTAACTTTCCCTCTTTGATAAATCTTTGAATGAATAGTTG
ATGCTTTTTGTTGAGACTAAATCACTAGTTAAAACTAAAACGCAGTACGT
GCAAATCCTATCATCAATATTGAGATTAAAAGGTATTGATCACAAAATTG
CTTTTAGTTAAATAATGTCATGACTATCACATACTAAGCAAGGACAGACT
AAACTTGTGGTTTGAATTTGTAAACTGTAGAGAGCTCGTTTGGAAGAAAA
GTCAAATCAATATAATGGACCAAAATTCAGGTAAGCTTTTTAATAACATA
CGAAATACTAATGTATATTCTTTTGAAATCAACGAGGAAGGGATTAAATA
AGCTCTAAGATAGTAAGTGCGGAGCTGTCATTATAAGCTGTCATAGGCAC
ACAAGTTTCCGACTGCATTCAAGGGCGATACGAAGactcccttttctcta
gctgtctactCGAAGATAGGGCAATGAGCAACTCCTTTCCcaggatttct
ccacttacccttgatctgtctctttaattgctgagcatcaagtaaAGAGG
CattaagtaccattttgggaatcttccAGTATGACCTTGGATGGGGGTCG
AACCACCCACAACTTGCGCACCGAAACTGGAAGCTCTATCTTCAATCTGG
CAGTCAAAGCTGGCATACAGAGTTATAATAGTATATATAATAAATGTaaa
ttgtaataaaatatttcttatctAGGATCCCGGTATGTGGAAAGTTCTCT
GATGACATTGATCGAAGATGAAGACGATAATAAGTGGCATGAACAGCAAT
TAAGTCGTAAAATGGTCATTAAAACGAAAACAGAAGAATACATTAACACT
TTCACCTTCCATGGTCTTACCAGAGTGTTCAAAGGTGAACGGATCGAATC
TGTATTTTGGTTATTTATGATATTAGGTGGTGTGTCATTATCGGGAGTTG
TCGTTAATCGCCTAGTTACCAGAtatcaaaaacatgaaatttacaCGGAG
ATTCAAACTAAAATCACAGATGAAAACTTCTTCCCAAGTGTGACATTTTG
TGAGAATCAGCTATTAATTGATAGCTATTTTTCATATTGTGGCGTTGCAC
CGAGACATGGACATGAAAATCATCACAAAGTTTGTGACTACATAATGAAA
GAACCGGAAGAATCCATCGAGGAATCTCGAAATAAATTCTGGTATAACGG
TCTATTTAACATTACAAAATGCGAAACATGGGGAGGCAAGAAATGCGCCA
GTAGTGATTATTTCAAGACTCTAAACCATTTCAACCATTCATGTATCACT
TGGAATTATGCAGGTAATTTGAGTGATGTCTATAGCCATGTTGATATTGA
GTTTGATGTTAAGCCACTATCTTGGCTTGGTAAAAACGAAGGTATACGAG
AACATTTACGAGAAGGTATATTTGCACTGCCACATGACCATAGAATATAC
GAAATTGACATAGTGAACAAATTAGACATTGAACCGTATAAAACATATGA
AATCAAATTAGACACAACCGTTATAAAAAGACTACCACACCCTTTCCCCT
CTAAGTGCGCAAGTAGTAAGGGTGATGAcatttttcctggaaaataCACG
CGAAGATCATGCATTGAATCACACAACTATATCGAAATGTACAAAAAATG
TGGGGACACTTTGGATTACGTACGCCAATTTATTCCACCTGATATTAAGA
AACAATACAAAGGGAATAAAACTATTAGAGAAGCAGAAAAGTGTGTTTGG
TTATTTGGGAAAGGAGAAacacaaaaaactaaaaactgtAATCTTCCTTG
CCAAGAACTGCAATTGGCGATAACGACTTCATCTAGCGAACGCAAAAAGG
ACAAATCACGAACCAAGTACCGTATAAGTTTGCAACATCAACTGATTGAT
GCTTATAAGGTTATGGAAGAGAAAGAGCTATATCCTTGGGACCAAATGGC
ATGTGAAATTGGAGGTCTTATCGGGTTGGCTATTGGTGCATCCATAATTT
CTTTGGTAGAGGTTATAGTGTACGCATTTTTGGTGATTGTTAATAAAGTG
ATCTGAGGAAAATTAGCCGCTAACAAAGGCATTTAACTAATATGAACAAA
ACGATATAGCAAAAACGACCTTTTGGAAGGAAAATAGGAGCTgaagaaat
ttccaaattctTTTGGAAAAGTCCTGCGTCATAAATTGatactagccgtc
ccggcgtcgtccgagacgacttcttactccttttaatacgctcgcttcgc
tcgcttttctatttttcagaaacttgtagggaTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049882-exon-scaffold_167-1491911889:351914..352099 | TCONS_00049882-exon-scaffold_167-1491911889:351914..352099 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1510915933:351914..352099 | TCONS_00049882-exon-scaffold_167-1510915933:351914..352099 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1575043694:351914..352099 | TCONS_00049882-exon-scaffold_167-1575043694:351914..352099 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1491911889:352913..353028 | TCONS_00049882-exon-scaffold_167-1491911889:352913..353028 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1510915933:352913..353028 | TCONS_00049882-exon-scaffold_167-1510915933:352913..353028 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1575043694:352913..353028 | TCONS_00049882-exon-scaffold_167-1575043694:352913..353028 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1491911889:354140..355314 | TCONS_00049882-exon-scaffold_167-1491911889:354140..355314 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1510915933:354140..355314 | TCONS_00049882-exon-scaffold_167-1510915933:354140..355314 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1575043694:354140..355314 | TCONS_00049882-exon-scaffold_167-1575043694:354140..355314 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1491911889:359623..359997 | TCONS_00049882-exon-scaffold_167-1491911889:359623..359997 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1510915933:359623..359997 | TCONS_00049882-exon-scaffold_167-1510915933:359623..359997 | Clytia hemisphaerica | exon |
| TCONS_00049882-exon-scaffold_167-1575043694:359623..359997 | TCONS_00049882-exon-scaffold_167-1575043694:359623..359997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:351914..359997 + |
Blast
The following BLAST results are available for this feature:
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