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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049864 ID=TCONS_00049864|Name=TCONS_00049864|organism=Clytia hemisphaerica|type=transcript|length=1751bp
TGGAAATATACGCCCAGAGCATCAGAAACTCTGAGAGAGAGAACGCCATG
CTGGGAGAGAGAAAACGAACATGATTCAAGGCTACAGcattttcaagatg
gcggcgaaATTTTCGACGATTTCGTTTGTTTTTTTCCTTCTCTTTCAAAC
ATCAAATTGTAATGAGAGCGAATCAAGTCCTCTCTTGTTTAAGATAGAAG
GCAAAGTATCAGTTTCTAAAGACAGATCTAGACCAACAGATTGGCAAAGT
GAAACATCAATCTTGGTTGACAGCGGTGCTTATAAAGGATTTTTGAAATC
AGATGGAACTTTTGTGATTAACAACATCCCTTCAGGCTCCTACATTGTTG
AGGTTGCATCAGCCAATTATCTATTCGATAGATTCCGTGTTGATATCAAC
AAAGGTGGCAAGATCAGGGCGCGTCAGTTGAATCTATTACAACCAAAAGC
TGTTCATGTTGTCCCTTACCCACTACGATTTGTGGCATCTAAACCAGCCC
CCTTCTTTGAGATCAGAGAAACTATGAAAGTTACGGATTTCTTGTTCAAC
CCAATgGTAATAATGATGGTGCTACCTTTGATATTCGTTGTCATTATGCC
TAAAATGATGTCAATGGCCGATCCTGAAGCCCAAAAGGAAATGCAAGAAC
AAATGGGAAAATATAATCAGCCACAAATTCCTGAACTTTCTGAAATGTTT
TCCAACATGTTTGCTGGGGGAGCTGAGAAGAAACGTACCAAACCATCACT
AGCATCATCGGATAGAGGTCCTGCTAAAAGATCAACTAAAAGACCAAGAT
AAGAGACTATTATTAAATCTAGAGAGAAATCTCTGTTTTCCAATGCTTTA
AAAGTCGTAATGGTTCATGGTATTATGAGCAACTTTTATTGGCATTTTGA
CTCGAAGCTGTAGTTCCAAagggaaaaaacatttttctatttAGCTAAAA
TGATTTGTAAGCCTTGCAGAAGCTTACATGATGGAATTTTAAAATATCAA
CATTATTGAAACgatgtttttttatcaaagataaatttttcacaaaagtt
gtcttgaACATGCTcgaagttttaaatttttggtcTTGTGGTCGAATTTT
TCTAATTGATTTTTGGATATGCGAAGAAGACGAAAACATTCGTTTGTTAT
CGATTGTTATAAACAATATTCTAAATCTATTTTGACCGTTTTTCCTTAGG
TTAGCAAAAATGGAAGTCCTTATCTACCGaaaaaagggtttaaaatcgaT
GTTCTTTATCTGAAAGATTAACAGttattaaaatatttctaacaaaaata
ctcaatcaTCTGTTTAACGATTTTTTGGGCAGGTGGTTTTTTCCTCgtat
ttaattaaaaaaagggaTGGGAATCTTTTTCAGAGAGAAGTAAATCcttg
ttattttttcttctcttgGTTAATTTTGATTAATTCTTCTTTACTTTCTT
TCATCTATCTTCACGTTAGTATCTCAGTAAAACCAATTTTATTTGTGCGT
TTTTTTCCTGATCTTAAACGGTTGGAAAATCGCATTAAGATTGTTTTAAC
TTTGATGAAAACTCGAATAGAAGTCGGTCGGATTTCTCTTTGAAATCATA
ATCAGTTTACCTTAATGTTTTATTGACCTGAAAGATACCCAAGCGTGACA
AACACCACCTGGGACATGCTATCAATACTTTTTTTGTGTCAGAATTATTT
ACTGAAAAGGTGTTAGTATAGATtttaaaatgattgaataagatATTAAA
C Run BLAST on NCBI transcript from alignment at scaffold_167:78137..95364+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049864 ID=TCONS_00049864|Name=TCONS_00049864|organism=Clytia hemisphaerica|type=transcript|length=17228bp|location=Sequence derived from alignment at scaffold_167:78137..95364+ (Clytia hemisphaerica)
TGGAAATATACGCCCAGAGCATCAGAAACTCTGAGAGAGAGAACGCCATG
CTGGGAGAGAGAAAACGAACATGATTCAAGGCTACAGcattttcaagatg
gcggcgaaATTTTCGACGATTTCGTTTGTTTTTTTCCTTCTCTTTCAAAC
ATCAAATTGTAATGAGAGCGAATCAAGTCCTCTCTTGTTTAAGATAGAAG
GCAAAGTATCAGTTTCTAAAGACAGATCTAGACCAACAGGTAACTTAAAG
TCGTTTTTTTACATTAACTATTGCATGGAATAAGACCGAGTTTTAAAATT
TATGGTGGGACAACCTCTCAGAAgctgatcgatcctatcgagcgtgGGAG
TCtggaaaaagaaagtattaataaaaaacgataaaattagcttctcttga
aaactaaaaacaataattttcacTCATCTCTtggaacaagcacttcaaaa
gataGCCTAGATATCCAGACcataaactatttcaccgtctagtttcttat
aatcttgtctctggtttacggtctggtccaagtaactcgtctgcagggat
atctgtccctgcatatgcgagtatctctaattggtcagtacgcgcccagt
caNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgttcgattgatgtttgatgagttcgattga
tgtttgatgagttcgattgatgttcgatgagtttgattgatgttcgatga
gtttgattgatGTTCAATGACTTCGATTGTCGTTTAAAAAAGCATGTAAT
TGTAAATAGCATTTTCCGTTTTTCGTCcaacagggatgagctggagcTTT
TTTATTATGTATGCTTCATTCATTgctcatttgaagtaatagagatgaca
ctttctttaaagaaagtgataaaaattaaaatcttttttttacaaattaa
cgaCCAACTAAATCgtaaaagagcttgtaaaatctccagcttgtcccatc
tgATGGGGTAGATATTGGATAGCCCGCAAGAATTGCCcatgggcggccgc
caatacgccctcggaatataaataaaaaattgggcggCAAGGTACAACAA
GGTATAAGTCGAACTAaagctataagcaaaaagctcatACCCATGTCTTT
TTTTAGCtgttaaagcataataatttgagttaagttgttttttaggacat
gaaacttggatattcaaaatctagTCAAAATTCCACTTCCACTGGATATA
TAACATGATAGGGTTATTTTCAggttacttttgttttttttttggatttc
ggcCTAAAAATGACCCAATTTTGGCCCAAAAAGTGATGTCCAACACCAAA
AACACAAATAGGAAATTATTTTTCTGAATTTGTAAGAAACATTAATATTT
TAATGTCAATTGTCATAAATACATACAAGAATGAGAAAAATTAACTTTGA
AAGTTAAAACATGCACTAAATCCTACTTTAATCGTAGAAAGGGCTTTTTA
CTTCCTTTTAAATTTCCTGTTTTTCTTAGAACAGATCGCTATTTTTAGCT
GAGCGATCTTTTCAAGTCATCTCTATACAAAAAAGCAAAGCAAAAAGCCT
TATCGAAAGAGAACACCATAATATTTCATCGCAGAGTAACTTTTTGAATC
CATCAAAGCAATTAAAATAGTAGCAATCTTCAAATCTCAGGACATCTAAA
AACTTGATTTTTCCTTTGTTAGACGTAATAAAATACTTACCATTGTTTAA
AGAATGAGTTCTTGTAATCACTTGGGAATATAACTACTACTCGCATCGTG
TTTACAACATATTTCTCATCTCTTTACTTTTTTCTACTGTGTAGGAGTGC
CAAACATGGAATTTCTTTTAGGAAATCTGAGAAACTTCATcatagaaata
ttttcaatcttttgCTGTATTTTCGGACTGCAAGTGTTGGGATAACAGAA
ATATATATCATCGTGTTCCTAATAAGAGTTGCAAAACGAatattgtattt
tcattttcaccacAACTTATTATTGAACATTTTAAGTACCTAATGTTATA
AGAGCATTGGTCTGATGGTAATGTGGCCCACACATGGAATCTCTAGGGGT
ATGTAGTCATATCAAATCTTATTGATTCTGATCAATATTGATATGGGCAA
GCTttaaacagtcattttttcTGATATATCAGGTACTCAAATTTTTCTAG
AGGgggttttcattcaaaatgtgaacggaaaataaggtttaaaaaaaaag
atcaacaTCACTGTACAATGATTCAATCATGAAGTTTTCTCAGCCTCCAA
GCTGCATTTTTaggtttctttgacaaatttttgcattttttaagATAACT
TCAAGTTGGTTTCAACCAGAAAAAAATCTGATAATTTTCTATTGGGAAga
tttcactttatttttctctttcatttttatttcttgttGCGGATATAACT
TTTTTGTCTAAAACGTTGCTGATGAAGTGTATTTGCAAGCTGGCATGCAG
TTTTATTATATGGAAGTAATGCCAAAgctattagaaatagaaaacaaata
ctCTGATGTCAAGTTGAggtccaaaatgaaaattttaatagaaaaaataa
tctttgtttttctttgaaaaagatGGTTTTGAGCCTGACAGCTTGAATAA
AAGTTAAATGCATTAATTGCACATTAGTCTAAACTACAAagaattttttg
ccaaatttgtctCATTATAACTACTCTAGGTCGAATTTCTTGACTAAGCA
TGTTTGATTAAGCTCTGATATTtgtattttctaaaaattgaagtctttaa
tgaaaaatttatctAAGGATAAAATTGAActtaaaaactttactttttcc
aattttgttCACCTTTTTGGGTGATATTACCAGATTAACGCTCATAAAag
cctttgatctttctttttggacctacctccgggtaccccggtggaggttc
tataaattaacccatatccgttcgtccgttcgttcgtccgtccgtccgtc
tgttaccagcttttctcaggattggctcattagttttttctgattttttg
cacaatgatgcaaaatagcaatgcccaaaacgtgacggagcccaattttt
gagaaaaaatttatttgggcaaatttgggccaaaaactacctaaaagtag
ggctttttggactttgtgcaaaatcctgtcattacttttttctgattttt
tgtagaaagatggagtgcaagattctctaaagaatgactgaagtggtttt
tcctggaaaattcttattcgccttaaaatacggattttcgtatttttggg
gaaattccctttaaccaaataagaaaatatagcttttctcaaagttgact
cattatttttttctgattttttgcacaatgatgcNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNctgattttttgcacaatgatgcaaaatggcaatgcctaa
aatgtgacggagcccgattttcgaaaaaaaatatatttgggcaaatttgg
gccaaaaactggctaaaaatagggttttttggacactgtgcaaaatcctg
tcattacttttttctgatattttgtacaaagatggagggcaagattctct
aaagaatggctgaagtggtttttcccggaaaattcttattcgccttaaaa
aacggattttcgtattttggggaaattctctttaaccaaataagaaaata
tagcttttctcaaagttgactcattattttttttgcacaatgatgcaaaa
tggcaatgcctaaaatgtgaaggagcccgattttcgaaaaaaaatatatt
tgggcagatttgggccaaaaactgcctaaaaatagggttttttggacttt
gtgcaaaatcctgtcattacttttttctgattttttgtacaaagatggag
ggcaagattctctaaagaatggctagcggtttttcctggaaaattcttat
tcgccttaaaagatggattttcgtattctggggaaattccctttgactaa
ataagaaaatatagcttttctcaatgttgactcataatttttttctgatt
ttttgcacaatgatgcaaaatggcaatgcccaaaatttgaaggagccaga
tttttaaggaaatttttttgggcaaatttgggccaaaaacagcttaaact
ggcttaaaaggttttttgggcctgaatggtttaagtgattttcgtatttg
gggaaattcctttttaccattttacattattcaacacacaagNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNtttttccattctgaatttttgtacaattattgtcact
tttttcttattttcatctgatgttaatcattaggtaggtccattcagcat
gttgcttgttttcttttgtttagtgtGGCGCTAAATGATgagattactca
ttttttttgcCGTTTGAAATATGACATGTATGTGCTCGACTGAcctgttt
tttgttttcttgttgcacattttctttttttttatcatttgattttttgt
gtgTATTGAGATTCTTTTTTGGTGTGTTTTAAATATACAtggtgttttct
tttcaaattcagtcGCTCCATTCGTCATGTGAAATTTTTCAGTCTGTGGG
CCTAGACTGGGGCtctgttattatcagttagagTTAGgattggagctcga
gagtcacaatataggGCTGAAGACCTTCTTAGGAGCACCCATACCCTGAT
ACTTAACCTAGGTTCCCATAGGCAGGCTAGCTCTCAAGCTCTAAAAAAGC
ATCTAATAACataaaaaccagaatatgatacTTCAATGGAAATCAAAAGA
TATAAAAGTGCactcacaaacatcaatttgtcagatctaacaaaattgaT
AATGGCACTGTCATCACTGACATCAttaattttctgtcaagaaccttgta
aacattccaacaacttccatcgttGAAATGATCTGCCGCAGCTAAgttga
ggattgagccgagaacgctcccaGAACGCCCGTGAGCTCCCGcacgggtg
aaaaactttaatctgtcaatctgtctttctcaagcgaagagtacgcgaag
ggacgctacaatctttcaagaaatatattgagaattccggttattttgac
gtttttcgagatttaaagttcgggcgaaaaagccgattttgggctatctc
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgagatcctaaggtcctaagtcttaag
tctagcgttaaaactcagagttaaaactctacccttcgaacctactttag
agcacttacaaatcgattgtggtttcaaaacaccccggtggatttccctt
ttgtctcaaatatttcttgaaggattgtagCTTTACGATAGTCCTGCGGA
TCATCATCGTCCGTCAAAGATATTTGCTAATATTTCAGAGACGAAACAAA
GACTGATTCCTGACTGATACCTTCTGCCACAGTACCAAATCCACAAAAAC
TCAAGTTCTAATTCCTAACACATCTTCTTCCATGGCAATTTGAAGACAGT
TTGTCTTGTTTACAAACCCATGGTACAGATTTGGTACAATTCACCCCCTA
CTCTTGGgtggggggtttggaataagcaggggggttggaataagaatgtc
ctgggtggaaaatttaattagcgcccccccccccccggctattaggtacc
cgagaataGTAAGGCTGCGATCACAAATAACTTCTGATTGGATCgttttt
aggtaaaaaaatgAGTTGGTTGATCGGGgcataaaattcaaaacagcCGG
GTCACTAGTCGTTGATTCTGTAGAAGTCATGATGAAATTGTTGAGTACAA
ACAGCTTGGATAAATCCCAGGGGGGTCAATATTCATAATACCACCAATAG
CCCAAATgcctgacttttgaccttttgaacTTGCCCTGAAATTGGTATCA
TTACCAACttaaaaatcatgattttcaaaacaataCCTATCCCTTTAGTT
TGGTATTAATACCAACTTGACCTTCAGGGGAGCAAAATTTCAAGgatata
catgtttttctttttataaccataacgcttataagcatatgaaggctcac
gtttgcagaattcctaaacataacataagcatatgtgtcagcctgaaata
tttttccagttgtcatttttatctgtttaaaaaggtttttaaaaaaaaga
ctttccacggtttcctacattccactgctcccaaaatctgaacaaatttt
tacaaaatttctgaaatttcactttAAAACTTTGGCTcgaggtgaatcat
aagcatgattcataagcatcTAATAAGCATAacctatgcctggatgcttc
gAGAACTTAGACTTACATatacgagcctgaccaaggggtatacacttgct
tataaaaagaaaaacatgtagaAGTAGTCTAGCGACGAAATGGTCTTTTT
TTGGTTCAAGCTTTACAAGTAGTATGTGtaggtttttggacctaccggga
ggtcctttaatttgaccgttgtccgttcgtctgttacaagcttttctcgg
gattggctcattatttttttttaattttttgcagaatgatacaaaatggc
CATGCCttaaaagtgacggagcccgatttttgaaaaaagtttttgggggg
aaaatttgggccaaaaactacccaaaaataaggttttttcgacttggtgc
aaaattgcttcattagtttttcctgatttttggcagaaagatagaggtCA
AGggaccctaaaatgtggctgaaggaatttttctcggaaaatttttcttt
cgtcgtcaaatacggattttcgtttttttggggaaattctcttttaccat
tttcctgttagcagcttttctcgggattgactcattagttttttttaatt
ttttgcagaatgatacaaaatggcCATGCCttaaaagtgacggagcccga
tttttgaaaaaagtttttggggggaaaatttgggccaaaaactacccaaa
aataaggttttttcgacttggtgcaaaattgcttcattagtttttcctga
tttttggcagaaagatagaggtCAAGggaccctaaaatgtggctgaagga
atttttctcggaaaatttttctttcgtcgtcaaatacggattttcgtttt
tttggggaaattctcttttaccattttcctgttagcagcttttctcggga
ttgactcattagttttttttaattttttgcagaatgatacaaaatggcCA
TGCCttaaaagtgacggagcccgatttttgaaaaaagtttttggggggaa
aatttgggccaaaaactacccaaaaataaggttttttcgacttggtgcaa
aattgcttcattagtttttcctgatttttggcagaaagatagaggtCAAG
ggaccctaaaatgtggctgaaggaatttttctcggaaaattttttttcgt
cgtcaaatacggattttcgcttttttggggaaattcccttttaccatttt
cctgttagcagcttttctcgggattgactcattagttttttttaattttt
tgcacaatgatacaaaatagcaatgcctgaaaagtgaccgagcccgattt
ttgaaaaaattttttggggggcaaatttgggccaaaaactacctaaaaat
aaggttttttggacttggtgcaaaattgcttcattagtttttcctgattt
ttgtcagaaagataGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNaccaagttacacaatgataaaagaaaa
taaatcagacgtttttgcattgttctaaaacttattgtgtttgctcaata
ccaatagtaaaatgtagaacacctctgattttgatcaacaggtaggtcca
ttcagcatgttgcttgtttttaattttttgcacaatgatacaaaatagca
atgcctgaaaagtgacggagcccgatttttgaaaaaaaattttggggtgc
aaatttgggccaaaaactacctaaaaataaggttttttggactttgtgca
aaattgcttcattagtttttcctgatttttggcagaaagatagagtgcaa
gNCccgattttgaaaacaaatttggggggcaaatttgggccaaaaactac
ctaaaaataaggttttttggacttgcttggtgcaaaattgcttcattagt
tttccctgatttttgtcagaaagatagagtgcaaggtaccttaaaatgtg
gctgaagtaatttttctcggaaaattttttttcgtcgtcaaattttcaaa
aaaagacgaccaagttacacaatgataaaagaaaataaatcagacgtttt
tgcattgttctaaaacttattatgtttgctcaataccaatagtaaaatgt
agaatacctacttttatctgattttgatcaacaggtaggtccattcagca
tgttgcttgttattttttttttcattatgcTCTAGGGTCCCTAAGGActg
gcaaagctggggaaatTCTTTGATGGAGCATTCATGGGGTAAGTAAGGGG
TCATTTTGGACCCTTTGAAActcattttttgaaagcttttattgacaaaa
ttgataCTATCATTAAGTGATAAGGCTGAAAGAAAAGATCTAAAAGATGG
GTTTACTGtctgattttttcgaaaaagtcctatggaaatggaaaaatatt
tatGTGAGTATTTTTGAGACTTTTTGAGGAAAATATCCAGTCAAAGAAAT
TCTataaatgggctcttccagaaaattttttacatggggggtggaggata
tattgtccggtgtgtaaatttgctctgtccgggggtaatttggtgtgtcc
ggggggtcagcagatgcttgtccgggggtaaaacctattgtccggggggc
caaaagtccaGGGGATAagtcactaaaaattgttatatccttcacccccc
catgtgatttttttttctggaagagcccaatatatTATTGGATAATACTC
TTCGAGATTTTGAGAGCCTGTTTAAAGGAATTTTCAGTACGCCTATAAGA
TCCAGACcagattttatttgatttgttttggtatGGGCTGaagtttcaat
ttcaattctgGGTTGTCTTAGTGCTCTAGTAATTTTTAAAGCATGTTGAC
AACACAGAACTTCATTTTGAGTATATTTCAATAAGACACCATTCAAAtac
aacacccccttctcacagacccactggcaccccttcccattggaaaaaaa
atgtccaaaatatcgtccccggtggaaaattatcctccaatttttgtcac
caatgaaatcaaataaaccaatcctcactgcaaaatattatgctattttt
cctatccccactgaattttttgacttgaaagcaaaggaattgaaatcccc
agccataagaaatattggaatattaatccccatcgagtttcagtccagTT
CAGTCTTTTATAAGTTTTGCAAATATATGTACTAACTGTACGGAGAGGAG
GTCAAATTTGGCGTACTGGTTGGTTATTTTAAGGCATTGTAACAACATTT
AGAGAACTTCAGATattattaaaacttttttttcgttttagagCTTCCCC
TGAGCTCCAAAACAAACTTCATtgactctgaaagtttttggcCATTTTAC
ATTAATTTATTTTGATGTAATGAGTCAACAAAACTCGAGTCACAACTCGA
AATTACCAAACTCATCCCCAGTTGTGATGTTGTTTGGAGGGCGTTGTAAT
CTGTTAGATTACCTTTGCCCATTGCGGATTTTGTTATCAACAACTTAGTT
TCTGCATTCAGCTTACTGAGGATTAAAgaatttatgcttaaaaaagaaga
attagtATAAAGCAACAAAATTGCTAAGcatgtaaaaaaagttttatcta
NTTATGCTTAAAAAGAAGAATTAGTATAAAGCAACAAAAGTGCTAAGtat
gtaaaaaaagtttttctaagaATATTAGAGAGGTATAATAAGTAAGTGTT
TTATAGTAAAAAGCGGATTTCAGGAGATTGTGAAGAGAGCTtggatataa
aaataaataatttaaactaaaaaattattggctattataaaaagataaca
taagaattaaaaaaatacttgggTTTGTATTACTAAAACGTAATATATGC
GGCGCGTGTGTATAGTGCGATAATATGAGGAGCCTAACCAGGCTCTCTCC
CAActgtttaaaagtttaaaaaataggtcgttttttataaaaattaccaA
ACTCATCCCCATCGTAAACCGGTTTATAAAAATAGTCTTTTGGCTAAAGG
TGAAGTTTTCTTAGCAAATTTGTGAATCTCAatgattcttatttttttat
caaaatttttaagaaaagaaGACACTAGAGAaggaatttttgatattttt
gaaccTACCTGGAGgccctttaatttgaccgttgttcgtccgtccgtccg
tccgtccatcCGCCCGTCCGTCCGCCCGTCCGCTTTTCTCGGGATCAgct
cattattattattattttttttgcacaattatGTAAAATAGCAAGGTCTA
AAAAGTgagagcccgatttttgaaaaaaaatttttgggcaaatttgggcc
aaaaaaactacctaaaataaggttttttttcttcaaaattcctTCATTAG
CTTtgcctgatttttggcagaatgatagagtgcaaggcaccctaaaatCT
GGCTGAAGTgatttttcttggaaatttttttttcgttgtaaaatacggat
tttcgttttttgggggaaattcccttttaccattttcctgttgccagctt
ttcttgtgattggctcattagttttttcagatattttgcacaaagataga
gGGCAAAGTTCTCTAAAATATGGCTCAAGTCGTTTTttccggaaaaattt
tttggcaGATTTTTGCCGTAAAAATTNGTTTGATGGCTCAAGTcgttttt
tccggaaaattttttttgcagatttttgccgtaaaaattggattttctta
tttagggaaattccgtttggtcatttttagggaaaatgagcatttctcgc
gattggctttgtatttttttctgactttttgcacagTGATATAAAATAGT
AATATTTAAAACCTGATGAAAtgcgattttcgaaaaattttttgggcaaa
tttgggccaaaaagtgcctaaaagtGGGGTTTTCTGGGCTTTGTGTGAAA
GTGCTTCAACagtttcttctattttttttgcACAGAGATAGAGCAAGGTT
CTCAAAAAAATGGCTCACTGCGTTTTTTccggaaaaatttttcttaCTGT
ATAATTcggatttttttatttggagAAATACTCTTCAGTAAATTTTAGGG
GAAATGAGTATTTCTCACGATTGACTtggtatttttattattttttgtca
atCCATAAAATCTATCCCTCAAGGTATTCTTAAGATAATCTTAACATTTA
GTCAATTTTCACCCTAATATTCTTTTAagcactattcttataaagaaagc
gTGTATTTCCCCACAAAAGATTTGATTCAATAAGGGCTCAGCAAACTCTC
AACTACTATTGTCGCACTCATTCCCACGATCTGTGCCGTCATagccaaat
ttgaatttgaaatttggttTCTTAATATTGTCCCTAATATTGGAGGTTCT
GTGCTTCGTTGCGCTcaaaaaattaccggccaactgaaatttccttattt
gcagTACTGAGTAAAACGTGAATTATTatattttccttttgtttttttct
cacaCTTATAGATTGGCAAAGTGAAACATCAATCTTGGTTGACAGCGGTG
CTTATAAAGGATTTTTGAAATCAGATGGAACTTTTGTGATTAACAACATC
CCTTCAGGCTCCTACATTGTTGAGGTTGCATCAGCCAATTATCTATTCGA
TAGATTCCGTGTTGATATCAACAAAGGTGGCAAGATCAGGGCGCGTCAGT
TGAATCTATTACAACCAAAAGCTGTTCATGTTGTCCCTTACCCACTACGA
TTTGTGGCATCTAAACCAGCCCCCTTCTTTGAGATCAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNtttttttttttttttttttgtcaatccaTAAAATCTATCCCTCA
AGGTATTCTTAAGATAATCTTAACATTTAGTCAATTTTCACCCTAATATT
CTTTCAagcactattcttataaagaaagcgTGTATTTCCCCACAAAAGAT
TTGATTCAATAAGGGCTCAGCAAACTCTCAACTACTATTGTCGCACTCAT
TCCCACGATCTGTGCCGTCATagccaaatttgaatttgaaatttggttTC
TTAATATTGTCCCTAATATTGGAGGTTCTGTGCTTCGTTGCGCTcaaaaa
attaccggccaactgaaatttccttatttgcagTACTGAGTAAAACGTGA
ATTATTatattttccttttgtttttttctcacaCTTATAGATTGGCAAAG
TGAAACATCAATCTTGGTTGACAGCGGTGCTTATAAAGGATTTTTGAAAT
CAGATGGAACTTTTGTGATTAACAACATCCCTTCAGGCTCCTACATTGTT
GAGGTTGCATCAGCCAATTATCTATTCGATAGATTCCGTGTTGATATCAA
CAAAGGTGGCAAGATCAGGGCGCGTCAGTTGAATCTATTACAACCAAAAG
CTGTTCATGTTGTCCCTTACCCACTACGATTTGTGGCATCTAAACCAGCC
CCCTTCTTTGAGATCAGAGAAACTATGAAAGTTACGGATTTCTTGTTCAA
CCCAATggtaatttattttattttgaaaatctcatGTTTCTGGTATTGTT
GACAATACTTCCCAAATAATTTGAGTAGAGGATTTCTCGGACTTCAATGA
GCAGAGACGTGTAAACCTTACTTTATCTCGTCCAGTCACTAGGATACTAC
TATTACTACGCAATACTTGATGATTGACTAAAGTTATTCGAACCAGACTA
TTCTATTCTAATGTAAGCTTTAGTTTTCATCATAAACTTCTCAAGTTCAT
CCAAAATGACCAATTGGATCTTTCTTGACGTTGTAGGTAATAATGATGGT
GCTACCTTTGATATTCGTTGTCATTATGCCTAAAATGATGTCAATGGCCG
ATCCTGAAGCCCAAAAGGTAAcctaaaaatgaattattttaCTTCTGAAG
TAGTCTTCTGAGAGTATCAAAGCCGCTAATTTATTATATGTCAATTCCTT
TGCTTGGTCAATGGTTTTTTAgaccctaaattcggttaaagaCCTTTTTT
GCAAGCCATATAACATATCAAGGAACCGGCCTTGTAATACATGCATTTAG
ATGTGTCTGAAAGTCATACAATgggttttagaatttttacTTTATCTTTT
AAATCAAAGAGGATATatcttttggttttatattgAACGTGACTGGGTAG
CTCATTCGGTAGAGCATTAACTTTACAAACTAAGGTTGtcggttcgatcc
ccggtcatcACCACCTCAGCAGATGAGTAGCTTTGATTNAGAAACTATGA
AAGTTACGGATTTCTTGTTCAACCCAATggtaatttattttattttgaaa
atctcatGTTTCTGGTATTGTTGACAATACTTCCCAAATAATTTGAGTAG
AGGATTTCTCGGACTTCAATGAGCAGAGACGTGTAAACCTTACTTTATCT
CGTCCAGTCACTAGGATACTACTATTACTACGCAATACTTGATGATTGAC
TAAAGTTATTCGAACCAGACTATTCTATTCTAATGTAAGCTTTAGTTTTC
ATCATAAACTTCTCAAGTTCATCCAAAATGACCAATTGGATCTTTCTTGA
CGTTGTAGGTAATAATGATGGTGCTACCTTTGATATTCGTTGTCATTATG
CCTAAAATGATGTCAATGGCCGATCCTGAAGCCCAAAAGGTAAcctaaaa
atgaattattttaCTTCTGAAGTAGTCTTCTGAGAGTATCAAAGCCGCTA
ATTTATTATATGTCAATTCCTTTGCTTGGTCAATGGTTTTTTAgacccta
aattcggttaaagaCCTTTTTTGCAAGCCATATAACATATCAAGGAACCG
GCCTTGTAATACATGCATTTAGATGTGTCTGAAAGTCATACAATgggttt
tagaatttttacTTTATCTTTTAAATCAAAGAGGATATATCTTTTGGTTT
TATGTTGAACGTGACTGGGTAGCTCATTCGGTAGAGCATTAACTTTACAA
ACTAAGGTTGtcggttcgatccccggtcatcACCACCTCAGCAGATGAGT
AGCTTTGATTGGGTAAACTAGGTGATCTAGGCgttaagttactgggagct
taGGATAGGTGTGGCGTTCCACCTCAGCATTTGACCTCCTAGGTCTAGCG
TCGATAGGTAGATAAGGGGACATACTGTCTCATTTCCGGTTTCTTcagcc
gacagccaccagatgaatatgcTTACTTATTTTATATTGGCCGCACTTCG
TTTATGGTCCAAAACCTGTGAATGATAGCTAAAGATAATAAACTTTGTGA
CTTTTCTTCCACAGGAAATGCAAGAACAAATGGGAAAATATAATCAGCCA
CAAATTCCTGAACTTTCTGAAATGTTTTCCAACATGTTTGCTGGGGGAGC
TGAGAAGAAACGTACCAAACCATCACTAGCATCATCGGATAGAGGTCCTG
CTAAAAGATCAACTAAAAGACCAAGATAAGAGACTATTATTAAATCTAGA
GAGAAATCTCTGTTTTCCAATGCTTTAAAAGTCGTAATGGTTCATGGTAT
TATGAGCAACTTTTATTGGCATTTTGACTCGAAGCTGTAGTTCCAAaggg
aaaaaacatttttctatttAGCTAAAATGATTTGTAAGCCTTGCAGAAGC
TTACATGATGGAATTTTAAAATATCAACATTATTGAAACgatgttttttt
atcaaagataaatttttcacaaaagttgtcttgaACATGCTcgaagtttt
aaatttttggtcTTGTGGTCGAATTTTTCTAATTGATTTTTGGATATGCG
AAGAAGACGAAAACATTCGTTTGTTATCGATTGTTATAAACAATATTCTA
AATCTATTTTGACCGTTTTTCCTTAGGTTAGCAAAAATGGAAGTCCTTAT
CTACCGaaaaaagggtttaaaatcgaTGTTCTTTATCTGAAAGATTAACA
GttattaaaatatttctaacaaaaatactcaatcaTCTGTTTAACGATTT
TTTGGGCAGGTGGTTTTTTCCTCgtatttaattaaaaaaagggaTGGGAA
TCTTTTTCAGAGAGAAGTAAATCcttgttattttttcttctcttgGTTAA
TTTTGATTAATTCTTCTTTACTTTCTTTCATCTATCTTCACGTTAGTATC
TCAGTAAAACCAATTTTATTTGTGCGTTTTTTTCCTGATCTTAAACGGTT
GGAAAATCGCATTAAGATTGTTTTAACTTTGATGAAAACTCGAATAGAAG
TCGGTCGGATTTCTCTTTGAAATCATAATCAGTTTACCTTAATGTTTTAT
TGACCTGAAAGATACCCAAGCGTGACAAACACCACCTGGGACATGCTATC
AATACTTTTTTTGTGTCAGAATTATTTACTGAAAAGGTGTTAGTATAGAT
tttaaaatgattgaataagatATTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049864-exon-scaffold_167-1491911889:78137..78375 | TCONS_00049864-exon-scaffold_167-1491911889:78137..78375 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1510915933:78137..78375 | TCONS_00049864-exon-scaffold_167-1510915933:78137..78375 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1575043694:78137..78375 | TCONS_00049864-exon-scaffold_167-1575043694:78137..78375 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1491911889:92177..92493 | TCONS_00049864-exon-scaffold_167-1491911889:92177..92493 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1510915933:92177..92493 | TCONS_00049864-exon-scaffold_167-1510915933:92177..92493 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1575043694:92177..92493 | TCONS_00049864-exon-scaffold_167-1575043694:92177..92493 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1491911889:93545..93625 | TCONS_00049864-exon-scaffold_167-1491911889:93545..93625 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1510915933:93545..93625 | TCONS_00049864-exon-scaffold_167-1510915933:93545..93625 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1575043694:93545..93625 | TCONS_00049864-exon-scaffold_167-1575043694:93545..93625 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1491911889:94251..95364 | TCONS_00049864-exon-scaffold_167-1491911889:94251..95364 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1510915933:94251..95364 | TCONS_00049864-exon-scaffold_167-1510915933:94251..95364 | Clytia hemisphaerica | exon |
| TCONS_00049864-exon-scaffold_167-1575043694:94251..95364 | TCONS_00049864-exon-scaffold_167-1575043694:94251..95364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:78137..95364 + |
Blast
BLAST of TCONS_00049864 vs. Swiss-Prot (Human)
Match: EMC7 (ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.139e-46 Identity = 81/176 (46.02%), Postives = 119/176 (67.61%), Query Frame = 2
Query: 188 FKIEGKVSVSKDRSRPTDWQSETSILVDSGAYKGFLKSDGTFVINNIPSGSYIVEVASANYLFDRFRVDINKGGKIRARQLNLLQPKAVHVVPYPLRFVASKPAPFFEIRETMKVTDFLFNPMVIMMVLPLIFVVIMPKMMSMADPEAQKEMQEQMGKYN-QPQIPELSEMFSNMF 712
FKIEG+ V +P DW S +LVD + GFLK+DG+FV+++IPSGSY+VEV S Y FD RVDI GK+RAR +N ++ V +PYPL+ +S P +F RE+ TDFL NPMV+MMVLPL+ V++PK+++ +DP+ ++EM++ M N ++P++SE + +F
Sbjct: 45 FKIEGRAVVPG--VKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDITSKGKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLF 218
The following BLAST results are available for this feature:
|
