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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049859 ID=TCONS_00049859|Name=TCONS_00049859|organism=Clytia hemisphaerica|type=transcript|length=4799bp
CTTTTTAGTGTGATGAATGTGGTGTTATTAACCTGATGTCATGATGTATC
CATTTGTGATAAAATGATAGTTACACCAAAcacaataaatttcaaattAC
ACAATGAATAATGAAGATTCTGAGGATTCAGGAGAAGAACAATATCAAGG
TTACATTTCCATACCTTATGGTCCACAGGTTACTGCTGAATACGTTCATT
CATCGAAACACTGCGACTTCCAAGATGTCATTTACAACAGTAAAACTTAT
GACTATATCATTCTTGACTCTAGAGGCATCTCCAGCTGGCACCCAACTTG
TATCACAAGTACCATCAAACGTGCCATGGAATTTGAGGCTTACAAGTTCA
ATGTTTTGAGATGTTTATGTTATTCAAGATTCCATAACTTATACTTTGCT
TTGACAAAACATTTTGGAATCAACGTTTACAATTTGAATTTCCTTGAAAT
TTGTCATCAAGATGGAGATGGAGATTCGATTTCTAGACTTCTTTACAACG
ATAAAGAGAATGAACTGATAGCAATATGCagaaataaaatcaaattttta
aagtATGTCATGAAAGAAATGAAACCTTCAATTGCATTCCAAAGAGAATT
TAAAGTAGAAGAGTCATTGGTCCTTTCAAGTGCcaaatttgatgaagatt
taCAGCGTATTTACTTAATGTGTGACACTGACATTTTTTGTTACTCCCTG
GATGGTAAAGAATTGTTTTGCTTGAGAGGACCTAATTCTATTGCATACTT
TTGTGCATGTGCGTATTCTGATGAAGCCAATCTGATGGTTGCAGGTTCAA
TCAATGGAGAACTCAGTATTTATAGTCCAAATGGAGGGCTTGTGACAGCA
ATGTTAAGCCATTCAAAGATCATAACATCATTGCTTATTCACCCAAAAGA
CGGAACTATGTTTATTTCTGCGTCACTTGATGGCACtataaaagtgtttt
ctttGCAGATGTTGGGTGAAATTTACAGCATCCCTGTCTTTACAGAGGGA
ATCCTTTTCATGAAAGTATACAGTACAAACTCTTTATTTGCAGCATCACA
TAAAGGTATCCAAACGTTTGATTNAGATGTTGGGTGAAATTTACAGCATT
CCTGTCTTTACAGAGGGAATCCTTTTCATGAAAGTATACAGTACAAACTC
TTTATTTGCAGCATCACATAAAGGTATCCAAACGTTTGATTTGAACTATT
CCTTCAGATTCTGGAGCACAAGCCGTGCACCAGTCAAACACATGAATGTC
ACATCACCAATAGCTGGATTAAGACAGTATGTTGTTGTCTCCACTGCTGA
TAACAGTATCCGATTATTCAGCAAACACACTGGTCAACGACGCACAACAA
TTCTTCCACCACCGGAAATTCCCATTGGTGATGATGTAATATCTGTGGCA
TTTGATCGACAAGGACGTGTAATATACATCCTGTTCAAACCTTTACAGTT
GTGGATCTATTCAACACGCACAGATCCAGCCACTCGTGTTGCTACTTGGG
ATCTTGATCAAACTATCAAGCAAAGCAGAGAAGACCAATTCAAACATCTT
CCTGATGACGGAAATCATGGCCATTCGAGATTTGGTGCTAGCAGTCAAAG
TCAAAAACAAGCTGAAGCCAACATTACATGCTGCTCATTAACAACAATAA
AGAGGGAAGTTTTCAATACTGACTCATTATCCGACCAGGATTTATTTAAC
TTTGGTTTCCTACTGTGTGGACTGAGCAATGGTTTGATTTGCTTTCTTGA
TCCTTGTCAACGCGGCTTGATAGTCAAGTCACTCAAAGCTCATCCAACAA
GTCCAGTTGTCAACTTAAGGGTTGATTATTTGTCTACAGTAACTTACTTA
TTGGCTGTTATCGACACCATCAATGGGATAATGGTTCGTATTTGGAATGT
TGTTACCCTTGAATGTTGTCACCAGATGTTCTTCTTTGAAGACTTTACAC
AGTTTGTATTCAAAAATCTTCAGATTGTCGTTGGTTATTCTACTGGTCAC
ATTCACACTGAAACCATATTCCAAAATGATGTCGACAAAGAAACTCACAA
AATGCTAAAGTCTAACCCAATGAAGGAACACGATGGACATATTGTGAGTC
TTGATTTGTCTGATACCCGTCAAATATTCTGCTCTGTTGGTTCAGATAAT
TATGTCAGGGTATGGAATCTTAGCAAAGTCTTACTCGTGGAAATCAAGTT
TGACAACACCTTGAAGTATGCATTGTTTCTGAGCCATCTGGATGAGATAT
TGATCAGTTTCAAATCACAGTTGTTTGTGATTCCTTACCATATTGTTTTC
CAAAGACAGCAACTACCTACATTCAACACCACTTGTGACGATAGCAGTGG
CGATGAATCTTTTATCTTTGAGGATCCATTTGTTTGCAAGAGAAACATGT
TGCAATCGAACAATCCACCAATCAATTTGGCGAGTTATCTTGTTCCTTAT
CCACACCTTGGCCTNATCCATTTGTTTGCAAGAGAAACATGTTGCAATCG
AACAATCCACCAATCAATTTGGCGAGTTATCTTGTTCCTTATCCACACCT
TGGCCTCGAAACTCTTTGGATGTTCAATAAAGCTCTTGTTGATCCAATTC
CCAATGAAGAAATTGATGTAGACCTTATTGTTGCATCAGAATTGTCCTCC
GACAGCTTAGACTCATTTGCCAGTACCACCCTTTACCAAGATAGTGATGA
GAGTCAAGAAATAGATGTTGTAGATATACAATTTCCATCTTGTCTCAGCA
CTCCTGAGCCACTGCATTCCAAACAGCCACCAGTGGAACCCCTAAAGAAC
GACGTGGCTGAGGTTATTGATGCCAAATCAAACATTGATGTAGCAGGAAG
TATTCAAACCCATGGTGGTCTTGCCAAACCTACCAGCCCTGCCCCTCTAA
GCTATTACGATAAGATCCGCAATAAACAAACCTCGTTGCCGTCAAAGCCG
ATTTCGAATGAAAAAGAACAAACGCTGAATATAATGAAACCATATCCTTT
TGCCAGCATCGAAAGAAAGGATATTTANACGCTGAATATAATGAAACCAT
ATCCTTTTGCCAGCATCGAAAGAAAGGATATTTATAAAATTACTCCTCGC
GCCAAGAAGAAAACCAAACGGAAGTCAAAAACCAACAAGACAAAGTCGAA
ACCTACCAAATCAGCATCCGTCACAGGAAAGTCCAATTCCAAAACTTCCT
CTGAAGTTGCACCAAGTACATCATCTACCTTCTTGAAAGAATCAAACATC
CGTCAATCTGAGAAGAAACAAACCTCTAACGAATTATTGGAAGGCAAATG
TATAGATCTCAAAATCAAAGATTCTTCCAGTGTAACCCAAACCAGTTCCT
CAGCTTCGGATGAATCAAAATCGAGAACTACTAGCAATCAACGCTCTCTC
CTTTCAATGGCTCTGGGAAAACAGACGGACGATACTGCTTTGGTTTCATA
CAGAAATGTATTGGATTCTCTTGTCAACCCAGAAAGTGACAGGTCTGATA
TCGAAGGAACGAGGCCTTCTTCTGTTAAATTCAATCCGTTNGACAGGTCT
GATATCGAAGGAACGAGACCTTCTTCTGTTAAATTCAATCAGTGTGTAGC
TGAATTATCATCAGGTGACGAATCATTAATTAGTGATACAAGTGACGCCG
AGTTGAAAGCTTTGCGATTCAATGATGGAGCTAGTACTGCAAGTCGATCA
TCTCAAAGAACAATTTCCTCTTCCCGAAAGACACATTCTTTGAACATCAA
TGCAGACAGTGAAACCTACTTTACATCAGTTATCCTTAATCTCCGACAAT
CTAAAGCCCAAAAGCAGAATCAAAACCTTCGAGCCAATTCTCAGCAATCT
ACAACCCAACAAAAGATTCAACACCTTCGAACCAAATCCCAGCAATCCGA
AACTCAGCAACAGAATCAAAACAGCCGAGCCAATTCTCAGCAATCTACAA
CTCAACAAAAGATTCAACACCTCCGAGCCAATTCTCAGCAATCTACAACT
CAACAAAAGATTCAACACCTCCGAGTCAATTCTCAGCAATCTGAAACCCA
ACAACAGAGTCAACACCTCCGAGCCAATTCTCAGCAATCTGAAACCCAGG
AACAGAATCAAAACCTCCGAGCAAATTATCAGCAATCTACAACTCAACAA
AAGATTCAACACCTCCGAGCCAATTATCAGCAATCTGAAACCCAGCAATA
TAATCAAGATCTCGAAGCCAAATTTCAACCTTCTAAGGCCCAACAACAGA
ATCAAAACCCTCAAGCAAAGTTTCTGCAATCGAAATCCCAGCAACAGAAT
CGAGATCTCCTAACAAAAGCTCAACGGCTGCAAGATAAATCCAAGATTAC
CAAACCTGAAAGCCCAATCAAATTGACAAGGGAGAAGAAATATTCTACAA
ATACCGAGAACGAAGTCATCAAGGTTGAAATTCGACCAAGTCAAACAGAT
CTCCATATCAATGACGAAGAAACTAACGAATCTCGACATATTGTTGAGAG
ACAACGAGATATGAAGAATAGCAGAAACAGTGGACGGTCATCTCGTTCTT
CCCAAGATCCTGAGATTCTTGATCCTTTGATGATTTCACCAGTTCGAGGT
ACCGACCCAAACAACAAAGAAGAATCTCCATTGATAATTAAGGATGAAGA
AACTCAACGTGTAATGAAATACATCCTCAGCTCCTTTCGAAAGCCAGCAT
CGCCAATCAGAAATAAACGATCACAATTCAGAACTGAGCTTGCTGAAAAT
ACTAGAGACCCTGAAAGTGATTATGCTTCAGCAGGTGACTACGAATCAT Run BLAST on NCBI transcript from alignment at scaffold_167:8558..13490+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049859 ID=TCONS_00049859|Name=TCONS_00049859|organism=Clytia hemisphaerica|type=transcript|length=4933bp|location=Sequence derived from alignment at scaffold_167:8558..13490+ (Clytia hemisphaerica)
CTTTTTAGTGTGATGAATGTGGTGTTATTAACCTGATGTCATGATGTATC
CATTTGTGATAAAATGATAGTTACACCAAAcacaataaatttcaaattgt
aaGTATTGCATgctttttctgtaaattctaaACTTTAATCATCACCATTA
GCCTGGTTATGTGCCAACTGTAATCTACAGTCTCTAAAAGACTGTTTTCA
TGATAATTTAGAACTTTTTCCTTTTATTCTAGACACAATGAATAATGAAG
ATTCTGAGGATTCAGGAGAAGAACAATATCAAGGTTACATTTCCATACCT
TATGGTCCACAGGTTACTGCTGAATACGTTCATTCATCGAAACACTGCGA
CTTCCAAGATGTCATTTACAACAGTAAAACTTATGACTATATCATTCTTG
ACTCTAGAGGCATCTCCAGCTGGCACCCAACTTGTATCACAAGTACCATC
AAACGTGCCATGGAATTTGAGGCTTACAAGTTCAATGTTTTGAGATGTTT
ATGTTATTCAAGATTCCATAACTTATACTTTGCTTTGACAAAACATTTTG
GAATCAACGTTTACAATTTGAATTTCCTTGAAATTTGTCATCAAGATGGA
GATGGAGATTCGATTTCTAGACTTCTTTACAACGATAAAGAGAATGAACT
GATAGCAATATGCagaaataaaatcaaatttttaaagtATGTCATGAAAG
AAATGAAACCTTCAATTGCATTCCAAAGAGAATTTAAAGTAGAAGAGTCA
TTGGTCCTTTCAAGTGCcaaatttgatgaagatttaCAGCGTATTTACTT
AATGTGTGACACTGACATTTTTTGTTACTCCCTGGATGGTAAAGAATTGT
TTTGCTTGAGAGGACCTAATTCTATTGCATACTTTTGTGCATGTGCGTAT
TCTGATGAAGCCAATCTGATGGTTGCAGGTTCAATCAATGGAGAACTCAG
TATTTATAGTCCAAATGGAGGGCTTGTGACAGCAATGTTAAGCCATTCAA
AGATCATAACATCATTGCTTATTCACCCAAAAGACGGAACTATGTTTATT
TCTGCGTCACTTGATGGCACtataaaagtgttttctttGCAGATGTTGGG
TGAAATTTACAGCATCCCTGTCTTTACAGAGGGAATCCTTTTCATGAAAG
TATACAGTACAAACTCTTTATTTGCAGCATCACATAAAGGTATCCAAACG
TTTGATTNAGATGTTGGGTGAAATTTACAGCATTCCTGTCTTTACAGAGG
GAATCCTTTTCATGAAAGTATACAGTACAAACTCTTTATTTGCAGCATCA
CATAAAGGTATCCAAACGTTTGATTTGAACTATTCCTTCAGATTCTGGAG
CACAAGCCGTGCACCAGTCAAACACATGAATGTCACATCACCAATAGCTG
GATTAAGACAGTATGTTGTTGTCTCCACTGCTGATAACAGTATCCGATTA
TTCAGCAAACACACTGGTCAACGACGCACAACAATTCTTCCACCACCGGA
AATTCCCATTGGTGATGATGTAATATCTGTGGCATTTGATCGACAAGGAC
GTGTAATATACATCCTGTTCAAACCTTTACAGTTGTGGATCTATTCAACA
CGCACAGATCCAGCCACTCGTGTTGCTACTTGGGATCTTGATCAAACTAT
CAAGCAAAGCAGAGAAGACCAATTCAAACATCTTCCTGATGACGGAAATC
ATGGCCATTCGAGATTTGGTGCTAGCAGTCAAAGTCAAAAACAAGCTGAA
GCCAACATTACATGCTGCTCATTAACAACAATAAAGAGGGAAGTTTTCAA
TACTGACTCATTATCCGACCAGGATTTATTTAACTTTGGTTTCCTACTGT
GTGGACTGAGCAATGGTTTGATTTGCTTTCTTGATCCTTGTCAACGCGGC
TTGATAGTCAAGTCACTCAAAGCTCATCCAACAAGTCCAGTTGTCAACTT
AAGGGTTGATTATTTGTCTACAGTAACTTACTTATTGGCTGTTATCGACA
CCATCAATGGGATAATGGTTCGTATTTGGAATGTTGTTACCCTTGAATGT
TGTCACCAGATGTTCTTCTTTGAAGACTTTACACAGTTTGTATTCAAAAA
TCTTCAGATTGTCGTTGGTTATTCTACTGGTCACATTCACACTGAAACCA
TATTCCAAAATGATGTCGACAAAGAAACTCACAAAATGCTAAAGTCTAAC
CCAATGAAGGAACACGATGGACATATTGTGAGTCTTGATTTGTCTGATAC
CCGTCAAATATTCTGCTCTGTTGGTTCAGATAATTATGTCAGGGTATGGA
ATCTTAGCAAAGTCTTACTCGTGGAAATCAAGTTTGACAACACCTTGAAG
TATGCATTGTTTCTGAGCCATCTGGATGAGATATTGATCAGTTTCAAATC
ACAGTTGTTTGTGATTCCTTACCATATTGTTTTCCAAAGACAGCAACTAC
CTACATTCAACACCACTTGTGACGATAGCAGTGGCGATGAATCTTTTATC
TTTGAGGATCCATTTGTTTGCAAGAGAAACATGTTGCAATCGAACAATCC
ACCAATCAATTTGGCGAGTTATCTTGTTCCTTATCCACACCTTGGCCTNA
TCCATTTGTTTGCAAGAGAAACATGTTGCAATCGAACAATCCACCAATCA
ATTTGGCGAGTTATCTTGTTCCTTATCCACACCTTGGCCTCGAAACTCTT
TGGATGTTCAATAAAGCTCTTGTTGATCCAATTCCCAATGAAGAAATTGA
TGTAGACCTTATTGTTGCATCAGAATTGTCCTCCGACAGCTTAGACTCAT
TTGCCAGTACCACCCTTTACCAAGATAGTGATGAGAGTCAAGAAATAGAT
GTTGTAGATATACAATTTCCATCTTGTCTCAGCACTCCTGAGCCACTGCA
TTCCAAACAGCCACCAGTGGAACCCCTAAAGAACGACGTGGCTGAGGTTA
TTGATGCCAAATCAAACATTGATGTAGCAGGAAGTATTCAAACCCATGGT
GGTCTTGCCAAACCTACCAGCCCTGCCCCTCTAAGCTATTACGATAAGAT
CCGCAATAAACAAACCTCGTTGCCGTCAAAGCCGATTTCGAATGAAAAAG
AACAAACGCTGAATATAATGAAACCATATCCTTTTGCCAGCATCGAAAGA
AAGGATATTTANACGCTGAATATAATGAAACCATATCCTTTTGCCAGCAT
CGAAAGAAAGGATATTTATAAAATTACTCCTCGCGCCAAGAAGAAAACCA
AACGGAAGTCAAAAACCAACAAGACAAAGTCGAAACCTACCAAATCAGCA
TCCGTCACAGGAAAGTCCAATTCCAAAACTTCCTCTGAAGTTGCACCAAG
TACATCATCTACCTTCTTGAAAGAATCAAACATCCGTCAATCTGAGAAGA
AACAAACCTCTAACGAATTATTGGAAGGCAAATGTATAGATCTCAAAATC
AAAGATTCTTCCAGTGTAACCCAAACCAGTTCCTCAGCTTCGGATGAATC
AAAATCGAGAACTACTAGCAATCAACGCTCTCTCCTTTCAATGGCTCTGG
GAAAACAGACGGACGATACTGCTTTGGTTTCATACAGAAATGTATTGGAT
TCTCTTGTCAACCCAGAAAGTGACAGGTCTGATATCGAAGGAACGAGGCC
TTCTTCTGTTAAATTCAATCCGTTNGACAGGTCTGATATCGAAGGAACGA
GACCTTCTTCTGTTAAATTCAATCAGTGTGTAGCTGAATTATCATCAGGT
GACGAATCATTAATTAGTGATACAAGTGACGCCGAGTTGAAAGCTTTGCG
ATTCAATGATGGAGCTAGTACTGCAAGTCGATCATCTCAAAGAACAATTT
CCTCTTCCCGAAAGACACATTCTTTGAACATCAATGCAGACAGTGAAACC
TACTTTACATCAGTTATCCTTAATCTCCGACAATCTAAAGCCCAAAAGCA
GAATCAAAACCTTCGAGCCAATTCTCAGCAATCTACAACCCAACAAAAGA
TTCAACACCTTCGAACCAAATCCCAGCAATCCGAAACTCAGCAACAGAAT
CAAAACAGCCGAGCCAATTCTCAGCAATCTACAACTCAACAAAAGATTCA
ACACCTCCGAGCCAATTCTCAGCAATCTACAACTCAACAAAAGATTCAAC
ACCTCCGAGTCAATTCTCAGCAATCTGAAACCCAACAACAGAGTCAACAC
CTCCGAGCCAATTCTCAGCAATCTGAAACCCAGGAACAGAATCAAAACCT
CCGAGCAAATTATCAGCAATCTACAACTCAACAAAAGATTCAACACCTCC
GAGCCAATTATCAGCAATCTGAAACCCAGCAATATAATCAAGATCTCGAA
GCCAAATTTCAACCTTCTAAGGCCCAACAACAGAATCAAAACCCTCAAGC
AAAGTTTCTGCAATCGAAATCCCAGCAACAGAATCGAGATCTCCTAACAA
AAGCTCAACGGCTGCAAGATAAATCCAAGATTACCAAACCTGAAAGCCCA
ATCAAATTGACAAGGGAGAAGAAATATTCTACAAATACCGAGAACGAAGT
CATCAAGGTTGAAATTCGACCAAGTCAAACAGATCTCCATATCAATGACG
AAGAAACTAACGAATCTCGACATATTGTTGAGAGACAACGAGATATGAAG
AATAGCAGAAACAGTGGACGGTCATCTCGTTCTTCCCAAGATCCTGAGAT
TCTTGATCCTTTGATGATTTCACCAGTTCGAGGTACCGACCCAAACAACA
AAGAAGAATCTCCATTGATAATTAAGGATGAAGAAACTCAACGTGTAATG
AAATACATCCTCAGCTCCTTTCGAAAGCCAGCATCGCCAATCAGAAATAA
ACGATCACAATTCAGAACTGAGCTTGCTGAAAATACTAGAGACCCTGAAA
GTGATTATGCTTCAGCAGGTGACTACGAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049859-exon-scaffold_167-1491911889:8558..8655 | TCONS_00049859-exon-scaffold_167-1491911889:8558..8655 | Clytia hemisphaerica | exon |
| TCONS_00049859-exon-scaffold_167-1510915933:8558..8655 | TCONS_00049859-exon-scaffold_167-1510915933:8558..8655 | Clytia hemisphaerica | exon |
| TCONS_00049859-exon-scaffold_167-1575043694:8558..8655 | TCONS_00049859-exon-scaffold_167-1575043694:8558..8655 | Clytia hemisphaerica | exon |
| TCONS_00049859-exon-scaffold_167-1491911889:8790..13490 | TCONS_00049859-exon-scaffold_167-1491911889:8790..13490 | Clytia hemisphaerica | exon |
| TCONS_00049859-exon-scaffold_167-1510915933:8790..13490 | TCONS_00049859-exon-scaffold_167-1510915933:8790..13490 | Clytia hemisphaerica | exon |
| TCONS_00049859-exon-scaffold_167-1575043694:8790..13490 | TCONS_00049859-exon-scaffold_167-1575043694:8790..13490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_167 | supercontig | scaffold_167:8558..13490 + |
Blast
The following BLAST results are available for this feature:
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