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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049858 ID=TCONS_00049858|Name=TCONS_00049858|organism=Clytia hemisphaerica|type=transcript|length=873bp
ATCTTTTACCATTTATATTTTACTCCCAAAAACAATTTAATTATatttat
ttccatattttttactCCAATAATAAATATGATACCTATATAAAATTCTA
TTTTATCTATAAATTCATTACCCTAACGCTATTCCGAAAACTCTTGGGTA
CCTATTAAAAAGCCCTctactaattaattttttgagctCTTCAACTCAGA
ATTCTCAGGATCTCATCTCTACCCGACTTCATCCCTTCCCGCTAGATAGC
TTTTGACCATTTAGTTTGAAGCCCAGAAACCaaacttatttcccatccga
AACGCGTTACCCGTgctgttttttatataaaaaaacacaccaatttgaaa
gtaaaatccatcgAAATATTCCTAATCGTAATGTCCAGTTTCTAGCCTCA
AagtaatgggctattccagaaatagtttgTACCCCTATGATCAgtaaaaa
aaatccaaggggatccggaaaattaaaaagaaattcaggAGGTTACCCTT
TCCCAAAAAAGACCACCTCGACATAGAATAGCCCAATGTTTGATAAAGAA
GATTGAAACAATGATGTGTTTTAATTCAGAAATTACAAGAGCAGTAAATA
ATCGTTTCTCCCTTTCTACCTAGACgataaaaaatttttggatggatttt
tttttagctaaaatgtCCAAAAGGTTCTGGATCCCCGGATCAAATACAAA
CTTGAAGAAATTactttaggcgagaccaatttaatttgttgttctacggg
cagatctttagcaaaatatgggtcggtcggtcggtaaaataagaataaat
gtttcatttatcagggttggcaaagtaccgaaaatgttttccaaaaaata
tctaattcaaaaattcacttttt Run BLAST on NCBI transcript from alignment at scaffold_166:687555..688427 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049858 ID=TCONS_00049858|Name=TCONS_00049858|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at scaffold_166:687555..688427 (Clytia hemisphaerica)
aaaaagtgaatttttgaattagatattttttggaaaacattttcggtact
ttgccaaccctgataaatgaaacatttattcttattttaccgaccgaccg
acccatattttgctaaagatctgcccgtagaacaacaaattaaattggtc
tcgcctaaagtAATTTCTTCAAGTTTGTATTTGATCCGGGGATCCAGAAC
CTTTTGGacattttagctaaaaaaaaatccatccaaaaattttttatcGT
CTAGGTAGAAAGGGAGAAACGATTATTTACTGCTCTTGTAATTTCTGAAT
TAAAACACATCATTGTTTCAATCTTCTTTATCAAACATTGGGCTATTCTA
TGTCGAGGTGGTCTTTTTTGGGAAAGGGTAACCTcctgaatttcttttta
attttccggatccccttggattttttttacTGATCATAGGGGTAcaaact
atttctggaatagcccattactTTGAGGCTAGAAACTGGACATTACGATT
AGGAATATTTcgatggattttactttcaaattggtgtgtttttttatata
aaaaacagcACGGGTAACGCGTTtcggatgggaaataagtttGGTTTCTG
GGCTTCAAACTAAATGGTCAAAAGCTATCTAGCGGGAAGGGATGAAGTCG
GGTAGAGATGAGATCCTGAGAATTCTGAGTTGAAGagctcaaaaaattaa
ttagtagAGGGCTTTTTAATAGGTACCCAAGAGTTTTCGGAATAGCGTTA
GGGTAATGAATTTATAGATAAAATAGAATTTTATATAGGTATCATATTTA
TTATTGGagtaaaaaatatggaaataaatATAATTAAATTGTTTTTGGGA
GTAAAATATAAATGGTAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049858-exon-scaffold_166-1491911889:687555..688427 | TCONS_00049858-exon-scaffold_166-1491911889:687555..688427 | Clytia hemisphaerica | exon |
| TCONS_00049858-exon-scaffold_166-1510915933:687555..688427 | TCONS_00049858-exon-scaffold_166-1510915933:687555..688427 | Clytia hemisphaerica | exon |
| TCONS_00049858-exon-scaffold_166-1575043694:687555..688427 | TCONS_00049858-exon-scaffold_166-1575043694:687555..688427 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:687555..688427 . |
Blast
The following BLAST results are available for this feature:
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