TCONS_00049855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049855
Unique NameTCONS_00049855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049855 ID=TCONS_00049855|Name=TCONS_00049855|organism=Clytia hemisphaerica|type=transcript|length=1305bp
CGTGGTTGTCATCACTACCATGACGTCATAAAGATTAAATTGACGATCTC
AAGAAGTACTCGTCAAAATAGCTTAAAATTTCACCGAAAATTGTATTgat
aaactttttcaaaatttcaaaatttttgatgacgtcagcaaaaaatttaa
aaaaacgaaaaattaaaATGTCCGATGACGAACTTTCAACCTGCGGTAAT
TCTTGACAGAAAAAGAGCCGATATAATGTCATCAAAAACAACCTTGAAAC
CCCTTCCCTAACTTGGTTAAGAATATTTACGAGcgacttttatcaaaaaa
ttaagaatatctatattaaagttaaaaaattcaattcttacaaaaaagcc
TGTAATGGCACGATAATAATACTATATCTaatataaaaaatctaaaaatt
ttcagagtttCGATAGTGAATTTTGTCTGGATTTTCTATCATCATTAGCA
TCGTATAAGAAAAGTGTCACAGAGACAACAAAACCATCATAAGAAAGTAC
CGATCGCAATATCAAGGCATCAGCAATCGGTGATCGTGCATTAGGGTCTC
TTTCAACGATCTTCTGATACAACGGTAACGGAATTTGACTGTCCGATAAT
ACACCATCGCATTTACTTTGGCATAAGTCTTTGGTGTAATTCATAAGAAA
ACCACTTAAACCATGGTGTCTATACTTTGGGTTTACAATAATAGTTTCTT
GGTAAAGGACTTTTTCCAGCTCATACTTGGAGAAGAAATTATGCCCTTGC
CAAACTTCATAAAGATGTTGTATGTATTTTCGCAGATTGGGTTTTAAACT
ATAATCATTCATAAGGCGTCGATTATAATCAACAAATTCTTTATTGAACA
GCTCTTCATCGACTAGATAATTCATGGAACAAGCAATCATTTTATCTCCA
TCATATACTACCACTGATACACCAAGATATTTCTCATCGTTCAAATTATC
ACTGTTTACGATTTCTTCAGCAAACTCTGCTTCGTGAAAATTCGGGTGTC
CTAGACCAGTTAATCCTAAACGTTTTACATAAGTTGGTATAAGAAATTCC
TCGTATAAATCTTGAACTTCTTTTATATGTGAAGAGTTAAATAACTCGAC
TTTAAGACCTTTAAAATCTTCCATTGACACTCTAGAATTTTAAGACTTTC
TCTTAAAAACAATCCAAAACTGTAATCAACACCatacattttttctttgc
tAAAAAAAAGACATCACAAGACAGCAAGATGCTGTTTGTATAACTTGCGT
ATTGCGTGAGAAAAATCTGCTCAAAAACCACACAGTAAAATAAACATGTT
TTTAA
Run BLAST on NCBI

protein sequence of TCONS_00049855-protein

>TCONS_00049855-protein ID=TCONS_00049855-protein|Name=TCONS_00049855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MEDFKGLKVELFNSSHIKEVQDLYEEFLIPTYVKRLGLTGLGHPNFHEAE
FAEEIVNSDNLNDEKYLGVSVVVYDGDKMIACSMNYLVDEELFNKEFVDY
NRRLMNDYSLKPNLRKYIQHLYEVWQGHNFFSKYELEKVLYQETIIVNPK
YRHHGLSGFLMNYTKDLCQSKCDGVLSDSQIPLPLYQKIVERDPNARSPI
ADALILRSVLSYDGFVVSVTLFLYDANDDRKSRQNSLSKL
Run BLAST on NCBI

transcript from alignment at scaffold_166:637296..638600

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049855 ID=TCONS_00049855|Name=TCONS_00049855|organism=Clytia hemisphaerica|type=transcript|length=1305bp|location=Sequence derived from alignment at scaffold_166:637296..638600 (Clytia hemisphaerica)
TTAAAAACATGTTTATTTTACTGTGTGGTTTTTGAGCAGATTTTTCTCAC GCAATACGCAAGTTATACAAACAGCATCTTGCTGTCTTGTGATGTCTTTT TTTTagcaaagaaaaaatgtatGGTGTTGATTACAGTTTTGGATTGTTTT TAAGAGAAAGTCTTAAAATTCTAGAGTGTCAATGGAAGATTTTAAAGGTC TTAAAGTCGAGTTATTTAACTCTTCACATATAAAAGAAGTTCAAGATTTA TACGAGGAATTTCTTATACCAACTTATGTAAAACGTTTAGGATTAACTGG TCTAGGACACCCGAATTTTCACGAAGCAGAGTTTGCTGAAGAAATCGTAA ACAGTGATAATTTGAACGATGAGAAATATCTTGGTGTATCAGTGGTAGTA TATGATGGAGATAAAATGATTGCTTGTTCCATGAATTATCTAGTCGATGA AGAGCTGTTCAATAAAGAATTTGTTGATTATAATCGACGCCTTATGAATG ATTATAGTTTAAAACCCAATCTGCGAAAATACATACAACATCTTTATGAA GTTTGGCAAGGGCATAATTTCTTCTCCAAGTATGAGCTGGAAAAAGTCCT TTACCAAGAAACTATTATTGTAAACCCAAAGTATAGACACCATGGTTTAA GTGGTTTTCTTATGAATTACACCAAAGACTTATGCCAAAGTAAATGCGAT GGTGTATTATCGGACAGTCAAATTCCGTTACCGTTGTATCAGAAGATCGT TGAAAGAGACCCTAATGCACGATCACCGATTGCTGATGCCTTGATATTGC GATCGGTACTTTCTTATGATGGTTTTGTTGTCTCTGTGACACTTTTCTTA TACGATGCTAATGATGATAGAAAATCCAGACAAAATTCACTATCGaaact ctgaaaatttttagattttttatattAGATATAGTATTATTATCGTGCCA TTACAggcttttttgtaagaattgaattttttaactttaatatagatatt cttaattttttgataaaagtcgCTCGTAAATATTCTTAACCAAGTTAGGG AAGGGGTTTCAAGGTTGTTTTTGATGACATTATATCGGCTCTTTTTCTGT CAAGAATTACCGCAGGTTGAAAGTTCGTCATCGGACATtttaatttttcg tttttttaaattttttgctgacgtcatcaaaaattttgaaattttgaaaa agtttatcAATACAATTTTCGGTGAAATTTTAAGCTATTTTGACGAGTAC TTCTTGAGATCGTCAATTTAATCTTTATGACGTCATGGTAGTGATGACAA CCACG

Coding sequence (CDS) from alignment at scaffold_166:637296..638600

>TCONS_00049855 ID=TCONS_00049855|Name=TCONS_00049855|organism=Clytia hemisphaerica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_166:637296..638600 (Clytia hemisphaerica)
ATGGAAGATTTTAAAGGTCTTAAAGTCGAGTTATTTAACTCTTCACATAT
AAAAGAAGTTCAAGATTTATACGAGGAATTTCTTATACCAACTTATGTAA
AACGTTTAGGATTAACTGGTCTAGGACACCCGAATTTTCACGAAGCAGAG
TTTGCTGAAGAAATCGTAAACAGTGATAATTTGAACGATGAGAAATATCT
TGGTGTATCAGTGGTAGTATATGATGGAGATAAAATGATTGCTTGTTCCA
TGAATTATCTAGTCGATGAAGAGCTGTTCAATAAAGAATTTGTTGATTAT
AATCGACGCCTTATGAATGATTATAGTTTAAAACCCAATCTGCGAAAATA
CATACAACATCTTTATGAAGTTTGGCAAGGGCATAATTTCTTCTCCAAGT
ATGAGCTGGAAAAAGTCCTTTACCAAGAAACTATTATTGTAAACCCAAAG
TATAGACACCATGGTTTAAGTGGTTTTCTTATGAATTACACCAAAGACTT
ATGCCAAAGTAAATGCGATGGTGTATTATCGGACAGTCAAATTCCGTTAC
CGTTGTATCAGAAGATCGTTGAAAGAGACCCTAATGCACGATCACCGATT
GCTGATGCCTTGATATTGCGATCGGTACTTTCTTATGATGGTTTTGTTGT
CTCTGTGACACTTTTCTTATACGATGCTAATGATGATAGAAAATCCAGAC
AAAATTCACTATCGaaactctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031614XLOC_031614Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049855-proteinTCONS_00049855-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049855-exon-scaffold_166-1491911889:637296..638600TCONS_00049855-exon-scaffold_166-1491911889:637296..638600Clytia hemisphaericaexon
TCONS_00049855-exon-scaffold_166-1510915933:637296..638600TCONS_00049855-exon-scaffold_166-1510915933:637296..638600Clytia hemisphaericaexon
TCONS_00049855-exon-scaffold_166-1575043694:637296..638600TCONS_00049855-exon-scaffold_166-1575043694:637296..638600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:637296..638600 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.36998 4.26142 1.5027 1.72116 3.40494 1.79375 5.28536 5.92212 4.22805 3.81803 2.03331 1.46597 4.58555 4.18085 7.51778 9.17235 3.18332 2.66504 2.30549 1.90842 1.158 0.824351 6.79205 4.99396 0.62558 0.868491 0.266316 0.426329 1.65271 2.26953
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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