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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049855 ID=TCONS_00049855|Name=TCONS_00049855|organism=Clytia hemisphaerica|type=transcript|length=1305bp CGTGGTTGTCATCACTACCATGACGTCATAAAGATTAAATTGACGATCTC AAGAAGTACTCGTCAAAATAGCTTAAAATTTCACCGAAAATTGTATTgat aaactttttcaaaatttcaaaatttttgatgacgtcagcaaaaaatttaa aaaaacgaaaaattaaaATGTCCGATGACGAACTTTCAACCTGCGGTAAT TCTTGACAGAAAAAGAGCCGATATAATGTCATCAAAAACAACCTTGAAAC CCCTTCCCTAACTTGGTTAAGAATATTTACGAGcgacttttatcaaaaaa ttaagaatatctatattaaagttaaaaaattcaattcttacaaaaaagcc TGTAATGGCACGATAATAATACTATATCTaatataaaaaatctaaaaatt ttcagagtttCGATAGTGAATTTTGTCTGGATTTTCTATCATCATTAGCA TCGTATAAGAAAAGTGTCACAGAGACAACAAAACCATCATAAGAAAGTAC CGATCGCAATATCAAGGCATCAGCAATCGGTGATCGTGCATTAGGGTCTC TTTCAACGATCTTCTGATACAACGGTAACGGAATTTGACTGTCCGATAAT ACACCATCGCATTTACTTTGGCATAAGTCTTTGGTGTAATTCATAAGAAA ACCACTTAAACCATGGTGTCTATACTTTGGGTTTACAATAATAGTTTCTT GGTAAAGGACTTTTTCCAGCTCATACTTGGAGAAGAAATTATGCCCTTGC CAAACTTCATAAAGATGTTGTATGTATTTTCGCAGATTGGGTTTTAAACT ATAATCATTCATAAGGCGTCGATTATAATCAACAAATTCTTTATTGAACA GCTCTTCATCGACTAGATAATTCATGGAACAAGCAATCATTTTATCTCCA TCATATACTACCACTGATACACCAAGATATTTCTCATCGTTCAAATTATC ACTGTTTACGATTTCTTCAGCAAACTCTGCTTCGTGAAAATTCGGGTGTC CTAGACCAGTTAATCCTAAACGTTTTACATAAGTTGGTATAAGAAATTCC TCGTATAAATCTTGAACTTCTTTTATATGTGAAGAGTTAAATAACTCGAC TTTAAGACCTTTAAAATCTTCCATTGACACTCTAGAATTTTAAGACTTTC TCTTAAAAACAATCCAAAACTGTAATCAACACCatacattttttctttgc tAAAAAAAAGACATCACAAGACAGCAAGATGCTGTTTGTATAACTTGCGT ATTGCGTGAGAAAAATCTGCTCAAAAACCACACAGTAAAATAAACATGTT TTTAA Run BLAST on NCBI protein sequence of TCONS_00049855-protein >TCONS_00049855-protein ID=TCONS_00049855-protein|Name=TCONS_00049855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MEDFKGLKVELFNSSHIKEVQDLYEEFLIPTYVKRLGLTGLGHPNFHEAE FAEEIVNSDNLNDEKYLGVSVVVYDGDKMIACSMNYLVDEELFNKEFVDY NRRLMNDYSLKPNLRKYIQHLYEVWQGHNFFSKYELEKVLYQETIIVNPK YRHHGLSGFLMNYTKDLCQSKCDGVLSDSQIPLPLYQKIVERDPNARSPI ADALILRSVLSYDGFVVSVTLFLYDANDDRKSRQNSLSKL Run BLAST on NCBI transcript from alignment at scaffold_166:637296..638600 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049855 ID=TCONS_00049855|Name=TCONS_00049855|organism=Clytia hemisphaerica|type=transcript|length=1305bp|location=Sequence derived from alignment at scaffold_166:637296..638600 (Clytia hemisphaerica) TTAAAAACATGTTTATTTTACTGTGTGGTTTTTGAGCAGATTTTTCTCAC
GCAATACGCAAGTTATACAAACAGCATCTTGCTGTCTTGTGATGTCTTTT
TTTTagcaaagaaaaaatgtatGGTGTTGATTACAGTTTTGGATTGTTTT
TAAGAGAAAGTCTTAAAATTCTAGAGTGTCAATGGAAGATTTTAAAGGTC
TTAAAGTCGAGTTATTTAACTCTTCACATATAAAAGAAGTTCAAGATTTA
TACGAGGAATTTCTTATACCAACTTATGTAAAACGTTTAGGATTAACTGG
TCTAGGACACCCGAATTTTCACGAAGCAGAGTTTGCTGAAGAAATCGTAA
ACAGTGATAATTTGAACGATGAGAAATATCTTGGTGTATCAGTGGTAGTA
TATGATGGAGATAAAATGATTGCTTGTTCCATGAATTATCTAGTCGATGA
AGAGCTGTTCAATAAAGAATTTGTTGATTATAATCGACGCCTTATGAATG
ATTATAGTTTAAAACCCAATCTGCGAAAATACATACAACATCTTTATGAA
GTTTGGCAAGGGCATAATTTCTTCTCCAAGTATGAGCTGGAAAAAGTCCT
TTACCAAGAAACTATTATTGTAAACCCAAAGTATAGACACCATGGTTTAA
GTGGTTTTCTTATGAATTACACCAAAGACTTATGCCAAAGTAAATGCGAT
GGTGTATTATCGGACAGTCAAATTCCGTTACCGTTGTATCAGAAGATCGT
TGAAAGAGACCCTAATGCACGATCACCGATTGCTGATGCCTTGATATTGC
GATCGGTACTTTCTTATGATGGTTTTGTTGTCTCTGTGACACTTTTCTTA
TACGATGCTAATGATGATAGAAAATCCAGACAAAATTCACTATCGaaact
ctgaaaatttttagattttttatattAGATATAGTATTATTATCGTGCCA
TTACAggcttttttgtaagaattgaattttttaactttaatatagatatt
cttaattttttgataaaagtcgCTCGTAAATATTCTTAACCAAGTTAGGG
AAGGGGTTTCAAGGTTGTTTTTGATGACATTATATCGGCTCTTTTTCTGT
CAAGAATTACCGCAGGTTGAAAGTTCGTCATCGGACATtttaatttttcg
tttttttaaattttttgctgacgtcatcaaaaattttgaaattttgaaaa
agtttatcAATACAATTTTCGGTGAAATTTTAAGCTATTTTGACGAGTAC
TTCTTGAGATCGTCAATTTAATCTTTATGACGTCATGGTAGTGATGACAA
CCACG Coding sequence (CDS) from alignment at scaffold_166:637296..638600 >TCONS_00049855 ID=TCONS_00049855|Name=TCONS_00049855|organism=Clytia hemisphaerica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_166:637296..638600 (Clytia hemisphaerica) ATGGAAGATTTTAAAGGTCTTAAAGTCGAGTTATTTAACTCTTCACATAT AAAAGAAGTTCAAGATTTATACGAGGAATTTCTTATACCAACTTATGTAA AACGTTTAGGATTAACTGGTCTAGGACACCCGAATTTTCACGAAGCAGAG TTTGCTGAAGAAATCGTAAACAGTGATAATTTGAACGATGAGAAATATCT TGGTGTATCAGTGGTAGTATATGATGGAGATAAAATGATTGCTTGTTCCA TGAATTATCTAGTCGATGAAGAGCTGTTCAATAAAGAATTTGTTGATTAT AATCGACGCCTTATGAATGATTATAGTTTAAAACCCAATCTGCGAAAATA CATACAACATCTTTATGAAGTTTGGCAAGGGCATAATTTCTTCTCCAAGT ATGAGCTGGAAAAAGTCCTTTACCAAGAAACTATTATTGTAAACCCAAAG TATAGACACCATGGTTTAAGTGGTTTTCTTATGAATTACACCAAAGACTT ATGCCAAAGTAAATGCGATGGTGTATTATCGGACAGTCAAATTCCGTTAC CGTTGTATCAGAAGATCGTTGAAAGAGACCCTAATGCACGATCACCGATT GCTGATGCCTTGATATTGCGATCGGTACTTTCTTATGATGGTTTTGTTGT CTCTGTGACACTTTTCTTATACGATGCTAATGATGATAGAAAATCCAGAC AAAATTCACTATCGaaactctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049855-exon-scaffold_166-1491911889:637296..638600 | TCONS_00049855-exon-scaffold_166-1491911889:637296..638600 | Clytia hemisphaerica | exon |
TCONS_00049855-exon-scaffold_166-1510915933:637296..638600 | TCONS_00049855-exon-scaffold_166-1510915933:637296..638600 | Clytia hemisphaerica | exon |
TCONS_00049855-exon-scaffold_166-1575043694:637296..638600 | TCONS_00049855-exon-scaffold_166-1575043694:637296..638600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_166 | supercontig | scaffold_166:637296..638600 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR016181 | Acyl_CoA_acyltransferase |
Blast
The following BLAST results are available for this feature:
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