TCONS_00049843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049843
Unique NameTCONS_00049843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length206

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049843 ID=TCONS_00049843|Name=TCONS_00049843|organism=Clytia hemisphaerica|type=transcript|length=206bp
NNGTCATTTTGCAGATCTCTGGCatctttgattgatttgatgGATTTGTA
AAGTAGAGCGTCATCAGCAAAAAGACTTATCTCTGAGGATGTGACTGCTA
ATGATATATATAAATGTCATTTATATATACTAAAAACAGCAGGGGTCCCA
GTACCGATCCTTGTGGGACTCCGGATGTTACTTTTCCCTCTGGTGATTCT
ACGCNN
Run BLAST on NCBI

transcript from alignment at scaffold_166:448919..449124

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049843 ID=TCONS_00049843|Name=TCONS_00049843|organism=Clytia hemisphaerica|type=transcript|length=206bp|location=Sequence derived from alignment at scaffold_166:448919..449124 (Clytia hemisphaerica)
NNGCGTAGAATCACCAGAGGGAAAAGTAACATCCGGAGTCCCACAAGGAT
CGGTACTGGGACCCCTGCTGTTTTTAGTATATATAAATGACATTTATATA
TATCATTAGCAGTCACATCCTCAGAGATAAGTCTTTTTGCTGATGACGCT
CTACTTTACAAATCcatcaaatcaatcaaagatGCCAGAGATCTGCAAAA
TGACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031602XLOC_031602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049843-exon-scaffold_166-1491911889:448919..449124TCONS_00049843-exon-scaffold_166-1491911889:448919..449124Clytia hemisphaericaexon
TCONS_00049843-exon-scaffold_166-1510915933:448919..449124TCONS_00049843-exon-scaffold_166-1510915933:448919..449124Clytia hemisphaericaexon
TCONS_00049843-exon-scaffold_166-1575043694:448919..449124TCONS_00049843-exon-scaffold_166-1575043694:448919..449124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:448919..449124 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.05716	0	1.73074	3.38651	10.3069	0	1.96523	3.67965	0	0	0	0	3.04983	0	1.73596	2.79442	1.1475	1.17615	0	5.10106	5.91167	4.32526	0	0	0	4.39411	0	0	0	1.72857
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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