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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049842 ID=TCONS_00049842|Name=TCONS_00049842|organism=Clytia hemisphaerica|type=transcript|length=1361bp
GAAAAAGTCACCCCTATTATAAATTTTTCAtcaacccaacccccacctat
ttaaaaaattctgaaaattctcGACCCGTCAAAAATAAACGAGGATAAAA
ATTGATTAGGTTGTTAAGCTTGTATTAAACATAAGCTTTCAATGTAACAC
TCATTTGAAAACTATGCGTATTGAGTGGTTTGAAAAAGGAGAAGTTGTGA
ATTTTTCAGCCTGTATCTTAGGTTAAAATAACCAGTCCTAATTTCCTAAA
GAAAAATGACCAATTTTTGACACTTTTGACTTTCTGCTTCTTACAATATC
CTAGAAAGTAGACAAGCTTTCTTAAAAAAATTTTCTGCATCAGTTCAGTA
CTAAAATTGGCCTTTTGCTTGAATATCTGGGGTTTAAAATCACTGTGTTG
GCTCTTCAGATAGCACTGAAGTAAAAAATTGATGAGAAGAATTTTTTTCA
GACATTTTGGTTGCTAGGCAACAAAGGCTGGTCACTGACAAAAAAAATTT
ATCAGCTTCTTAATGTGTATTCAGACTCTAAACTCTATTCGCTATTTAGC
TCAATGCCTATCAAAACATAAAAGCATTTTTACGgacagctaatttgaaa
tgaaaCTCACAAGTAACCAAATAGTGTACGTTTACAGTTGTGAAAATTAT
ATCAGGTATGTCTGGGGCTGGAATTGGCTTGGTTTGCTGTCACACAAATC
TAGCTTTTGGATGAAGGTGAGTCCGTCgagataaaattttcttttggtaa
ataatgaaatttttgtcTGGATGCAGGTCCATGCAGGTctggttttaaaa
aaattgcttcTTCTTTGAGATAGCAAAAGATTTTGATTGTTGGTCAGCAG
ATTTTGAATAAGGttgggtgacggcaaaccaataTTCTTTTGAGTCCAAC
CTGGTTTATTGGTTGGAAAAAAAGTACGATTCTTAAGTAAAATTCTAAGA
AAAAACaagtagaatccgaaagatcctAATTTGCATTGAAGCACAACAAT
CCTGGTTTTTTCTAGAAAAACTGACTgcctgtggacaaaaaagctttgta
agaaaaaacgcttcaaaCTACCACTCAAAAATACTTTTATAGCATTTCTA
TTAAAATCAGCTTGATACAGTTTCATTTGTCTGAAATATTGATcaaaaag
ttgatgcaatcgGTTTTGAAATTAGAGTAGACGCAGACGTCCAGTCTGTG
ACCAGCAAAATcgaaagtaagaaaaagaagaccCTTCATtgtgatcaaaa
cattccagacactcaaggaaaaaaagaaaaccttcCACTGCGAACAAAAC
TTTGAAAGGGCATGCCTGTGTTCGATAACTTTGACAGTCTTATGTGAAGT
TTATAGCTCCG Run BLAST on NCBI transcript from alignment at scaffold_166:446443..447803 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049842 ID=TCONS_00049842|Name=TCONS_00049842|organism=Clytia hemisphaerica|type=transcript|length=1361bp|location=Sequence derived from alignment at scaffold_166:446443..447803 (Clytia hemisphaerica)
CGGAGCTATAAACTTCACATAAGACTGTCAAAGTTATCGAACACAGGCAT
GCCCTTTCAAAGTTTTGTTCGCAGTGgaaggttttctttttttccttgag
tgtctggaatgttttgatcacaATGAAGggtcttctttttcttactttcg
ATTTTGCTGGTCACAGACTGGACGTCTGCGTCTACTCTAATTTCAAAACc
gattgcatcaactttttgATCAATATTTCAGACAAATGAAACTGTATCAA
GCTGATTTTAATAGAAATGCTATAAAAGTATTTTTGAGTGGTAGtttgaa
gcgttttttcttacaaagcttttttgtccacaggcAGTCAGTTTTTCTAG
AAAAAACCAGGATTGTTGTGCTTCAATGCAAATTaggatctttcggattc
tacttGTTTTTTCTTAGAATTTTACTTAAGAATCGTACTTTTTTTCCAAC
CAATAAACCAGGTTGGACTCAAAAGAAtattggtttgccgtcacccaaCC
TTATTCAAAATCTGCTGACCAACAATCAAAATCTTTTGCTATCTCAAAGA
AgaagcaatttttttaaaaccagACCTGCATGGACCTGCATCCAgacaaa
aatttcattatttaccaaaagaaaattttatctcGACGGACTCACCTTCA
TCCAAAAGCTAGATTTGTGTGACAGCAAACCAAGCCAATTCCAGCCCCAG
ACATACCTGATATAATTTTCACAACTGTAAACGTACACTATTTGGTTACT
TGTGAGtttcatttcaaattagctgtcCGTAAAAATGCTTTTATGTTTTG
ATAGGCATTGAGCTAAATAGCGAATAGAGTTTAGAGTCTGAATACACATT
AAGAAGCTGATAAATTTTTTTTGTCAGTGACCAGCCTTTGTTGCCTAGCA
ACCAAAATGTCTGAAAAAAATTCTTCTCATCAATTTTTTACTTCAGTGCT
ATCTGAAGAGCCAACACAGTGATTTTAAACCCCAGATATTCAAGCAAAAG
GCCAATTTTAGTACTGAACTGATGCAGAAAATTTTTTTAAGAAAGCTTGT
CTACTTTCTAGGATATTGTAAGAAGCAGAAAGTCAAAAGTGTCAAAAATT
GGTCATTTTTCTTTAGGAAATTAGGACTGGTTATTTTAACCTAAGATACA
GGCTGAAAAATTCACAACTTCTCCTTTTTCAAACCACTCAATACGCATAG
TTTTCAAATGAGTGTTACATTGAAAGCTTATGTTTAATACAAGCTTAACA
ACCTAATCAATTTTTATCCTCGTTTATTTTTGACGGGTCgagaattttca
gaattttttaaataggtgggggttgggttgaTGAAAAATTTATAATAGGG
GTGACTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049842-exon-scaffold_166-1491911889:446443..447803 | TCONS_00049842-exon-scaffold_166-1491911889:446443..447803 | Clytia hemisphaerica | exon |
| TCONS_00049842-exon-scaffold_166-1510915933:446443..447803 | TCONS_00049842-exon-scaffold_166-1510915933:446443..447803 | Clytia hemisphaerica | exon |
| TCONS_00049842-exon-scaffold_166-1575043694:446443..447803 | TCONS_00049842-exon-scaffold_166-1575043694:446443..447803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:446443..447803 . |
Blast
The following BLAST results are available for this feature:
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