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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049799 ID=TCONS_00049799|Name=TCONS_00049799|organism=Clytia hemisphaerica|type=transcript|length=5980bpRun BLAST on NCBI protein sequence of Subunit beta laminin protein >TCONS_00049799-protein ID=TCONS_00049799-protein|Name=Subunit beta laminin protein|organism=Clytia hemisphaerica|type=polypeptide|length=1659bp FRYFAYDCDKAFPRDKYKDIKRGPQTKIDDVICEERYSKVEPSTKGEVVLRun BLAST on NCBI transcript from alignment at scaffold_166:21135..48994- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049799 ID=TCONS_00049799|Name=TCONS_00049799|organism=Clytia hemisphaerica|type=transcript|length=27860bp|location=Sequence derived from alignment at scaffold_166:21135..48994- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:21135..48994- >TCONS_00049799 ID=TCONS_00049799|Name=TCONS_00049799|organism=Clytia hemisphaerica|type=CDS|length=134460bp|location=Sequence derived from alignment at scaffold_166:21135..48994- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049799 vs. Swiss-Prot (Human)
Match: LAMB1 (Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2) HSP 1 Score: 1061.6 bits (2744), Expect = 0.000e+0 Identity = 631/1660 (38.01%), Postives = 918/1660 (55.30%), Query Frame = 2
Query: 2 FRYFAYDCDKAFPRDKYKDIKRGPQTKIDDVICEERYSKVEPSTKGEVVLKVLDPIISQQEDPYSFAVQNLLKVTNLRVKFTELHTFGDDVLGDNPKVNQKYYYSLYEMVVRGSCSCYGHAEQCIPSEGTRADVN-MVHGKCNCTHFTTGRNCEKCLDGYADEPWRPAYKGQLNACKKCNCNGHTDKCHFDPAVYNATGGRSGGVCDDCQHNTAGRQCEVCKPLYYRDPFKNIVDPEVCKPCDCDPAGSIGGGECETVTNGGSELI-GRCLCKQNAGGNRCDKCKNGFWNMLESNENGCQSCGCDERGTV-GDDKCDQQTGTCRCLRYVKGRTCSKCSDGFWALGTTPEGCKPCECDPGGAKNDKCDDISGMCTCKQYLTGRKCNEVRPGFYVPNLDHNLYEAEDTDRADESSNSIYRRIYDKTGEVQFTGDGYLQVQKGSVVEFDKVTVPYSGRYHVVIRYETLGEGDWDDVRITVRKENGARLGENDCAPFDATEQILFTGLSSSSKSKVVEQTICFEKGANYELNVDF-QSNNGRGNIQ---TILDSLLLFPNVGDLDVFA---GREGPQRKKIYDQLECRKYYLLPGGAD--KAPQE--CKDIQFSIASEMHNGALACKCDPTGTVSSGSSDILTCDKNGGQCKCKPGVGGRRCDRCLSGYFGFGPEGCTACDCSAVGSTSLFCHDSTGKCPCKPTLEGRKCDSCPVNHFGFPNCEKCSCSGHSETCDTVTGECVDCKHNTDGFNCDKCAEGFYGDASQGTVNDCKRCQCPGGS-SGNQFSNICTQTADGTVICNNCTEGYSGDQCERCTDGYYGNPLTAGGSCKKCQCNGNIDPFASNKCDPATGVCNACINNAAGDHCEYCKDGFFGNAKNQTCQKCVCNVLGT--DKAKGS---CDASTGQCPCLPNVSGVECDRCAPGYFNLASGVGCEKCNCDKEGSLEGSCNQMDGQCRCRVGFGGRNCSECEDFSWGDPKSLNGCKRCGCNPIGSVSAQCDRKSGVCTCKDNVIGEKCDMCAPRTAGVMPKCENCHTCNDQWDDIVSDL-EKNITFL-----INLKGNFTFNASEIELYSKEIQKLKDNLRMIEEGMAQKQVKGDDVDEIRRKVSDLTKELMKLDAEADIYVKTVRQTEGRNKNANDELDNLDIRFYNLKVKASEFKDNVTKLIESNIGGALNSTRDSQRRSRKAQESVD----ESXXXXXXXXXXXXXXXXXXXLGEPEFEVLDKENNELVDNLTKRIDGLDNELAELNKLLXXXXXXXXXXXXXXXXET-CGGSN--VDGEESKCTGAKNLAGEALKIAEEAKSKLLRKKADAEILLFDVREAEKAVNASKTAADSAEKSSME-------AKKIGEEAAQNITTLIKDIREFLGEKFRFPNESKALALETLTKNISLTPEEARNLAKQINQTASELRGVDEILEKSKENHTIALNLKEEALKARDYALAIMNKTERILGMLSKAAELRNSTAQVIGVARLNIDELLKLIEQIKEKQAIVDKDLTEASGSVDNLESKRDEVKSLFDENKRKLPEAEREAEKAEDLAKQVNETSN-KLETKYGTVQKKLREKQEEIGNIRERLQKLSDGAIALFQXXXXXXXXXXXXXXXYNRNEERVKDLMDELKRLEILVGSSKEKLVELSKCHANC 4858
+RYFAYDC+ +FP I GP K+DD+IC+ RYS +EPST+GEV+ + LDP + EDPYS +QNLLK+TNLR+KF +LHT GD++L ++ +KYYY++Y+MVVRG+C CYGHA +C P +G +V MVHG C C H T G NCE C+D Y D PWRPA NACKKCNCN H+ CHFD AVY ATG SGGVCDDCQHNT GR CE CKP YY+ P ++I DP C+ C CDPAGS G C++ T+ + LI G+C CK N G CD CK GF+++ + GC+SC C+ GT+ G + CD +TG C C R V G+ C +C W L +GC+PC+CD GGA N+ C SG C+C+ ++ GR+CNEV PG+Y LDH LYEAE+ + SI R Y + +TG G+++V +G+ +EF +PYS Y ++IRYE W+ ITV++ G + C + LS S+ V+ + +CFEKG NY + ++ Q + +++ T++DSL+L P LD+F +G ++ + +Y L K P C++I FSI++ +H LAC+CDP G++SS CD NGGQC+C+P V GR C+RC G FGFGP GC C+C GS + FC+ TG+C C + R+CD C H+GFP+C+ C C+GH++ CD VTGEC++C+ T G NC++C G+YGD G+ + C+ C CP G SG QF+ C Q + C GY G +C+ C GY+GNP GGSC+ CQC+ NID CD TG C C+ + G+HC++C+ G++G+A Q C+KCVCN LGT + GS CD +TGQC CLPNV G CDRCAP + LASG GC+ CNC+ S SCN+ GQC+C GFGGR CSEC++ WGDP C+ C C+P G + QCD+ +G C C + V G +CD C +GV P C CH C WD I+++L + FL + + G ++ +++ ++KD L K + G+ +E + + D+T E+M A + VK T N A ELD+L +L E + + + S+I GAL+S + S +A+E V+ E V++S +R +++ ++ E +F+ +E L+D L ++ LD L AS ET CGG N D E KC G G + +A A K + D L +V + K V+ +K AD A++S+ + K+ +++ + + LIK IR FL + + +A+A E L + TP++ +NL + I + L V+ IL+ S + A L EEA +A A + + + L +A + + + + I A +I L+ I+ + A ++ L AS + LE +E+K +N + E+ + A+ V +T + +L+ KY V+ + +K EE + R + + L + A L +A KL+L+K+L++KY N+ ++D EL RLE V S + + + ++ C
Sbjct: 163 YRYFAYDCEASFP-----GISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALDPAF-KIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGFNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSISCHFDMAVYLATGNVSGGVCDDCQHNTMGRNCEQCKPFYYQHPERDIRDPNFCERCTCDPAGSQNEGICDSYTDFSTGLIAGQCRCKLNVEGEHCDVCKEGFYDLSSEDPFGCKSCACNPLGTIPGGNPCDSETGHCYCKRLVTGQHCDQCLPEHWGLSNDLDGCRPCDCDLGGALNNSCFAESGQCSCRPHMIGRQCNEVEPGYYFATLDHYLYEAEEANLG--PGVSIVERQYIQDRIPSWTGAGFVRVPEGAYLEFFIDNIPYSMEYDILIRYEPQLPDHWEKAVITVQRP-GRIPTSSRCGNTIPDDDNQVVSLSPGSRYVVLPRPVCFEKGTNYTVRLELPQYTSSDSDVESPYTLIDSLVLMPYCKSLDIFTVGGSGDGVVTNSAWETFQ--RYRCLENSRSVVKTPMTDVCRNIIFSISALLHQTGLACECDPQGSLSS------VCDPNGGQCQCRPNVVGRTCNRCAPGTFGFGPSGCKPCECHLQGSVNAFCNPVTGQCHCFQGVYARQCDRCLPGHWGFPSCQPCQCNGHADDCDPVTGECLNCQDYTMGHNCERCLAGYYGDPIIGSGDHCRPCPCPDGPDSGRQFARSCYQDPVTLQLACVCDPGYIGSRCDDCASGYFGNPSEVGGSCQPCQCHNNIDTTDPEACDKETGRCLKCLYHTEGEHCQFCRFGYYGDALQQDCRKCVCNYLGTVQEHCNGSDCQCDKATGQCLCLPNVIGQNCDRCAPNTWQLASGTGCDPCNCNAAHSFGPSCNEFTGQCQCMPGFGGRTCSECQELFWGDPDV--ECRACDCDPRGIETPQCDQSTGQCVCVEGVEGPRCDKCTRGYSGVFPDCTPCHQCFALWDVIIAELTNRTHRFLEKAKALKISGVIGPYRETVDSVERKVSEIKDILAQSPAAEPLKNI-GNLFEEAEKLIKDVT-EMM-----AQVEVKLSDTTSQSNSTAK-ELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQMSLEAEERVNASTTEPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLLDELAGKLQSLD--------LSAAAEMTCGTPPGASCSETECGGPNCRTDEGERKCGGPG--CGGLVTVAHNAWQKAMDLDQDVLSALAEVEQLSKMVSEAKLRADEAKQSAEDILLKTNATKEKMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVESLSQVEVILQHSAADIARAEMLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAAQNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQNEAKTLLAQANSKLQLLKDLERKYEDNQRYLEDKAQELARLEGEVRSLLKDISQKVAVYSTC 1785 The following BLAST results are available for this feature:
BLAST of TCONS_00049799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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