|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049798 ID=TCONS_00049798|Name=TCONS_00049798|organism=Clytia hemisphaerica|type=transcript|length=7158bpRun BLAST on NCBI protein sequence of TCONS_00049798-protein >TCONS_00049798-protein ID=TCONS_00049798-protein|Name=TCONS_00049798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2232bp MSGDDQKLMSDPKYKQFIQQIDKALKIFESSSEWADLISCLGKLSKVIQTRun BLAST on NCBI transcript from alignment at scaffold_166:652735..686742+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049798 ID=TCONS_00049798|Name=TCONS_00049798|organism=Clytia hemisphaerica|type=transcript|length=34008bp|location=Sequence derived from alignment at scaffold_166:652735..686742+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:652735..686742+ >TCONS_00049798 ID=TCONS_00049798|Name=TCONS_00049798|organism=Clytia hemisphaerica|type=CDS|length=147378bp|location=Sequence derived from alignment at scaffold_166:652735..686742+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049798 vs. Swiss-Prot (Human)
Match: DOP1 (Protein dopey-1 OS=Homo sapiens GN=DOPEY1 PE=2 SV=1) HSP 1 Score: 453.751 bits (1166), Expect = 1.400e-128 Identity = 239/595 (40.17%), Postives = 371/595 (62.35%), Query Frame = 3
Query: 4488 LNETRDGLLGILPAIITAISSVWKVW----DANKISTQNLPSKTPLAIGQTKAVRLSILQLITPIAMNHTVVFLASLADVWCLYRDSSFIKPHPNLHSKEWLHLSNKKYIPSITEDQSVLLEIIQAIKALTLDTIVDTSKQVLRQLIAMKERNQPVPLEVCMLQFLYELLSK-GSDDLDSIKTTLMALLKDAHSLNMTPPALFVLMAILNIYVQKIPVSEERRSRREIQDLVTKFLESLNAIAASSLEGSAWFRRSLQVVTQQDQSSDLEESTATTLSDKSSFPENLPPPTPNVVNSKTSQYSVPAILILAEYIAPMMDLVYVSEEKDKIASALVYLIYNIIPYLKNHSTQNNTGYRASSALLAAISDYQYTLRAWRKDVYELFLDSDFFQMDLLSFGFWRIIIDRLITYDNSVFKDLMQKIVLSQSGAINIFANREQEMEQRAQLLKRLSFVIFCGDLDQYHQYIPDIQERLAESIRQLQGPFLHEQVFLCFRLLLVRMSPNHLISFWPPILAELVLVFVHMEHELINGGKPKNKT--KVAVLE-SFLGINGYFK--DPTKWLRLYLAVCKLLDFLLILPSESLPHYQVYKWAF 6242
L E R G+L IL I+++++ +W + + K++ S T + +G TK +R IL+L+ PI+MNH V F+A++A VW R + + K IP+ +E+Q +L+E++++I + +T++ T K+VL+Q A+ + + + LEVCMLQF Y + + +L +L+ LLKD+ L++ P F+++ +LN ++ K P E ++ +R++QD+ K ++++ AIA SSLE + W RR+L+V D T L S E++ P N S YSV A+ +L+E +A ++D+V+ S+EK+++ LV +++ ++PYL+NHS N YRA LL+++S YQYT RAW+K+ ++LF+D FFQMD WR I+D L+T+D + F+DLM ++ ++QS ++N+FANR+ E+EQRA LLKRL+F IF ++DQY +Y+PDIQERL ES+R Q P LH QVFL FR+LL+RMSP HL S WP ++ ELV VF+ ME EL + VA LE ++ G NG+ + +WL LYL+ CK LD L LPSE+LP +Q+Y+WAF
Sbjct: 1754 LFEARSGILSILHMIMSSVTLLWSILHQADSSEKMTIAASASLTTINLGATKNLRQQILELLGPISMNHGVHFMAAIAFVWNERRQNKTT--------------TRTKVIPAASEEQLLLVELVRSISVMRAETVIQTVKEVLKQPPAIAKDKKHLSLEVCMLQFFYAYIQRIPVPNLVDSWASLLILLKDSIQLSLPAPGQFLILGVLNEFIMKNPSLENKKDQRDLQDVTHKIVDAIGAIAGSSLEQTTWLRRNLEVKPSPKIMVD-----GTNLE---SDVEDMLSPAMETANITPSVYSVHALTLLSEVLAHLLDMVFYSDEKERVIPLLVNIMHYVVPYLRNHSAHNAPSYRACVQLLSSLSGYQYTRRAWKKEAFDLFMDPSFFQMDASCVNHWRAIMDNLMTHDKTTFRDLMTRVAVAQSSSLNLFANRDVELEQRAMLLKRLAFAIFSSEIDQYQKYLPDIQERLVESLRLPQVPTLHSQVFLFFRVLLLRMSPQHLTSLWPTMITELVQVFLLMEQELTADEDISRTSGPSVAGLETTYTGGNGFSTSYNSQRWLNLYLSACKFLDLALALPSENLPQFQMYRWAF 2326 HSP 2 Score: 409.068 bits (1050), Expect = 9.466e-115 Identity = 256/654 (39.14%), Postives = 376/654 (57.49%), Query Frame = 3
Query: 102 MSGDDQKLMSDPKYKQFIQQIDKALKIFESSSEWADLISCLGKLSKVIQTYSQFSVLPRKLLIGKRLAQCLHPALPSGVHLKALECYNLILTQIGTGRLAQDLFIYSVGLFPLLSQASIAVRPILLNLYETHFLPLKKKLYPGLSGFLVALLPGIEEGSEFTERTTSILQKLCDSISEEIFFTCLWDTVLHSSMTRLSALLFAIGYIAKKPG-QFKNSIVGKEVSLMVNALCASLDDSNVLVQRITLDFVIXXXXXXXXVLSEKHVVKLLTYALGVLLRRDMSLNRRIFQWFLNVNSDGNPIHKMXXXXXXXXXXXXGSREEKS--YFDLYVHEPLTIAIIILFQNILESLEGAFEADSLTSKHRQTHLKPFRILITLLDKPEVGSAILNEIMLEIFRTLYK-----------------HSQVRSKLVDISIRIGKDVNSMHNELIKNANLLFSSLESYYIWEYLSKVLRRCV---------IVDKDAEHNKTLKACTNGFSSLIDIKLPTHLETFQIISYLLDVVSL----------ETSLETQSEHWPNLLRTVIKELIKNSSKLDLKTMSEGISLVSKLFSRLSPIFNQPEMPTFTSTVLQ----QSPS----KDGSLSPTLDTSATSFFEKGGISSCTDLSKTLFCQFVK 1922
M+ ++ +L+SD KY+ ++ IDKALK FE SSEWADLIS LGKL+KV+Q +++ V+P+KL IGKRLAQCLHPALP GVH KALE Y +I IG RLA+DLF+YS GLFPLL+ A+++V+P LL+LYE ++LPL K L PGL G L +LPG+EEGSE+ ERT +L+K+ ++ + F++ LW ++L S RL + + + ++ +K + + I+G ++ LMV A+ S+ DS+VLVQR TLD ++ F FH S + ++++L+ AL V+LRRDMSLNRR++ W L +++G I S + EE + YF + E L A++ + Q + G E ++L LKPFRILI+LLDKPE+G IL ++++E+FRTLY H+Q+ SKL + N ELIK ANLLF+S E YY+W+Y+++ C I D+ + L+ TN F L+D +LLD+VSL ET +E Q+EH P LL +I L + L L +++ + L SK+ S++ P P + T VLQ Q+ S +D +S + T FE G + S++ F +F++
Sbjct: 1 MNTEELELLSDSKYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLHPALPGGVHRKALETYEIIFKIIGPKRLAKDLFLYSSGLFPLLANAAMSVKPTLLSLYEIYYLPLGKTLKPGLQGLLTGILPGLEEGSEYYERTNMLLEKVAAAVDQSAFYSALWGSLLTSPAVRLPGITYVLAHLNRKLSMEDQLYIIGSDIELMVEAVSTSVQDSSVLVQRSTLDLILFCFPFHMSQATRPDMIRILSAALHVVLRRDMSLNRRLYAWLLGFDNNGAIIGP--------RSTRHSNPEEHATYYFTTFSKELLVQAMVGILQ-----VNGFGEENTLMQD-----LKPFRILISLLDKPELGPVILEDVLIEVFRTLYSQCKAELDLQTEPPFSKDHAQLSSKLRE---------NKKTAELIKTANLLFNSFEPYYMWDYVARWFEECCRRTLHVRLQIGPGDSNDSSELQ-LTN-FCLLVD--------------FLLDIVSLPTRSMRVLCQETYIEIQTEHLPQLLLRMISALTSHLQTLHLSELTDSLRLCSKILSKVQP----PLLSASTGGVLQFPSGQNNSVKEWEDKKVSSVSHENPTEVFEDGENPPSSRSSESGFTEFIQ 607 HSP 3 Score: 190.66 bits (483), Expect = 5.098e-48 Identity = 128/394 (32.49%), Postives = 199/394 (50.51%), Query Frame = 3
Query: 3117 GGKTTPT---HPLLIHKLLYTQRYDHQQCLHILSHIGSVLDNEGRAFICSAATTSMSVCNTPHQSLLRELLIRHRRALSGNQFYGSLADAHQLLIRASTAKYLEILLSVCLYFIRSDYQQEARASQADLEGNFTVQQASAKVLTQIAYLLLEIARDSGKGFSVYVNDLLSRSKIQRIALHCLLSTVYAVTGDYRESSEVGYYSMVEYPNLLETADLQNGKQ---RNHIDLQVSLLKFIESLIHLESCIGTDNPAHVNPTEKKSKRDKSGS----IGKTPP---FEYVAFKPIVSQPMFISASLTVLREKRWVHLHADWIKLLISCLPKFSNDMSKAIVPVVYQLCANLKTVTKIFKXXXXXXXXXXXXVQ--IPPDYMLVLLNGLTSFCHYCLI 4253
G + +P HPL H LLY Q YD + L+ S I ++L AF+ + +TTS++ TP SLL+ LL RHR ++ G FY + R+S Y+EIL+S+CLY++RS Y + + DL GN +Q S ++LT + L ++ S KGF +++D+LS+ K+Q++ LHCLLS++++ + E ++ ++V L N + N LQ LLK ++ LI LE + T P E ++ D S I P +Y+ +PI Q MF+ A + L + +H WI L+ S LP + + +V V QLC NL + + +K + IPPD +L LL G+T+ HYCL+
Sbjct: 1353 GSRKSPNFNIHPLYQHVLLYLQLYDSSRTLYAFSAIKAILKTNPIAFVNAISTTSVNNAYTPQLSLLQNLLARHRISVMGKDFYSHIPVDSNHNFRSSM--YIEILISLCLYYMRSHYPTHVKVTAQDLIGNRNMQMMSIEILTLLFTELAKVIESSAKGFPSFISDMLSKCKVQKVILHCLLSSIFSAQKWHSE--KMAGKNLVAVEEGFSEDSLINFSEDEFDNGSTLQSQLLKVLQRLIVLEHRVMTI------PEENETGFDFVVSDLEHISPHQPMTSLQYLHAQPITCQGMFLCAVIRALHQHCACKMHPQWIGLITSTLPYMGKVLQRVVVSVTLQLCRNLDNLIQQYKYETGLSDSRPLWMASIIPPDMILTLLEGITAIIHYCLL 1736 HSP 4 Score: 149.058 bits (375), Expect = 2.254e-35 Identity = 105/348 (30.17%), Postives = 169/348 (48.56%), Query Frame = 3
Query: 1860 EKGGISSCTDLSKTLFCQFVKETIFKNNLNARLLLEDSAGEL---DFNTLINQSSSNNEVEEKGLGSKVAE-----TFQVFCQYLVKVSCFP-----------LSSTPLQGEEENNSIPDWLLALLACCCFNDCFDIQSSALSTVLDLINVT-----LTTSQTKKTESYSKITP-------LISP----SNLEWI-QKSNLFKVIANNLWSRLLPNRCQHQQGAVQLFLQLHNISPSSGVCEDVINNALVSFDIHERELSHWRFTTLWHLSRDFYKDDNNKANTGTRTIDKCMFLIINSLRSENLRVREIAQQWLQHSVNFGDIGRILETILLVLLEPSTSRIAIHYV 2795
+K + C + + + + I +NN ++ L + G+L T +S +V+EK + + F CQ ++ S FP L S L+ + E+ P WL L+ C F +QS A+S V+DL+ +T +T E ++P +I P NL +I +K+ FK +A LW +L QH Q +V+LF QLHN+ PSS +CEDVI+ L D R +H +F LWHL+RD + NK+++ R+ D+ +F++++SL S + + Q WL + DI R+LE +LL+LL P T R+++ V
Sbjct: 670 QKTAMQCCLEYVQQFLTRLINLYIIQNNSFSQSLATEHQGDLGREQGETSKWDRNSQGDVKEKNISKQKTSKEYLSAFLAACQLFLECSSFPVYIAEGNHTSELRSEKLETDCEHVQPPQWLQTLMNACSQASDFSVQSVAISLVMDLVGLTQSVAMVTGENINSVEPAQPLSPNQGRVAVVIRPPLTQGNLRYIAEKTEFFKHVALTLWDQLGDGTPQHHQKSVELFYQLHNLVPSSSICEDVISQQLTHKDKKIRMEAHAKFAVLWHLTRDLHI---NKSSSFVRSFDRSLFIMLDSLNSLDGSTSSVGQAWLNQVLQRHDIARVLEPLLLLLLHPKTQRVSVQRV 1014 The following BLAST results are available for this feature:
BLAST of TCONS_00049798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.