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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049792 ID=TCONS_00049792|Name=TCONS_00049792|organism=Clytia hemisphaerica|type=transcript|length=3990bpRun BLAST on NCBI protein sequence of TCONS_00049792-protein >TCONS_00049792-protein ID=TCONS_00049792-protein|Name=TCONS_00049792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1001bp MSSFWSKLFKPAAKNKVYKYLTKGVDPNEIWEICGELGDGTFGKVYKAKRRun BLAST on NCBI transcript from alignment at scaffold_166:531432..546068+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049792 ID=TCONS_00049792|Name=TCONS_00049792|organism=Clytia hemisphaerica|type=transcript|length=14637bp|location=Sequence derived from alignment at scaffold_166:531432..546068+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:531432..546068+ >TCONS_00049792 ID=TCONS_00049792|Name=TCONS_00049792|organism=Clytia hemisphaerica|type=CDS|length=63126bp|location=Sequence derived from alignment at scaffold_166:531432..546068+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049792 vs. Swiss-Prot (Human)
Match: STK10 (Serine/threonine-protein kinase 10 OS=Homo sapiens GN=STK10 PE=1 SV=1) HSP 1 Score: 412.149 bits (1058), Expect = 5.937e-124 Identity = 176/300 (58.67%), Postives = 234/300 (78.00%), Query Frame = 3
Query: 126 KNKVYKYLTKGVDPNEIWEICGELGDGTFGKVYKAKRKSDGALTAAKIVDIKNEQDLDDFMVEIDILAECKHKYVVNLFETYYFEDKLWMMLEFCPGGAMDDIILDLERGLDETTIKSLCRQMVEGLAFLHSCGVIHRDLKAGNVLLTETGDIKLADFGVSAKCKTAQGRRNTFIGTPYWMAPEVVVTETMHDETYDNKADVWSLGITLIEFAEMQPPSHEMHPMRVLMRITKSDPPTLQHRKKWSADFHNFLAVCVNKDPNQRPSMEELLEHPFIRDVKDTQPVIDLYREAKAEVVETL 1025
K++ Y+++ + +DPNE+WEI GELGDG FGKVYKAK K GAL AAK+++ K+E++L+D++VEI+ILA C H Y+V L YY + KLW+M+EFCPGGA+D I+L+L+RGL E I+ +CRQM+E L FLHS +IHRDLKAGNVL+T GDI+LADFGVSAK +R++FIGTPYWMAPEVV+ ETM D YD KAD+WSLGITLIE A+++PP HE++PMRVL++I KSDPPTL KWS +F +FL + ++K+P RPS +LLEHPF+ + + + +L EAKAEV+E +
Sbjct: 19 KSREYEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSITSNKALRELVAEAKAEVMEEI 318 HSP 2 Score: 204.912 bits (520), Expect = 8.723e-54 Identity = 143/416 (34.38%), Postives = 256/416 (61.54%), Query Frame = 3
Query: 1677 KTLTRVRQYEKDGKMVTETVQRIVDVSSEDFRAAAKKEQQLRKLALQEMKALR---REEQKQGAELMARIRLQWDQIDERFHTEEDECKKKYEADIENMSRQQKREMEKLELNQNNQLKQDLKHLKIDQEKQLKTFREMLKQDQKRLKKEIEKLPKATKKEEMRVRKEKLDLHQQNQERQFLAKQGQENVDFHRAKVE-EHRKIIFNKEMEFLNKKHNLIRAWKSDEWEMEQTRIYNKHNLTKKQLKETFFLQRSQMANRHSKELDQHTRLYRTKEDDLRHRQDLERKRLPKIQRNELRTRVQAKRKQLRGERNKRESIVGGGLNASEKDKLREYEDKVRKQQAEDTNRMIGRHQQEENDLRQSADNELNELKQLQNEKRHMLVQSESEKLKEREVKHSTELNEWKESLAPRKRTL 2912
KTL R R++ DG V+ T +I+ SED KK++++R L QE++ LR +EE + +L + LQ +Q+ +RF E + KK ++ ++EN+ RQQK+++EK+E + + +++ + ++++Q++ F+E LK +K +K E+EKLP+ +KE M+ + E+ +Q +R F+AKQ +E+++ ++ ++R+ I +KE E L KK L+R ++ WEME+ ++ +H L K+QLK+ +FLQR ++ +H KE +Q R + + L+ RQ E+ RLPKIQR+E +TR+ +K L I GGG A +++K++++ + K+Q + + +H+ + D+ ++ ++EL+QLQNEK H+LV+ E++KLK + H+ L EW++ L PRK+ L
Sbjct: 525 KTLKRTRKFVVDGVEVSITTSKII---SED----EKKDEEMRFLRRQELRELRLLQKEEHRNQTQLSNKHELQLEQMHKRFEQEINAKKKFFDTELENLERQQKQQVEKMEQDHAVRRREEARRIRLEQDRDYTRFQEQLKLMKKEVKNEVEKLPRQQRKESMKQKMEEHTQKKQLLDRDFVAKQ-KEDLELAMKRLTTDNRREICDKERECLMKKQELLRDREAALWEMEEHQLQERHQLVKQQLKDQYFLQRHELLRKHEKEREQMQRYNQRMIEQLKVRQQQEKARLPKIQRSEGKTRMAMYKKSLH--------INGGGSAAEQREKIKQFSQQEEKRQKSERLQQQQKHENQMRDMLAQCESNMSELQQLQNEKCHLLVEHETQKLKALDESHNQNLKEWRDKLRPRKKAL 924 The following BLAST results are available for this feature:
BLAST of TCONS_00049792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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