TCONS_00049790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049790
Unique NameTCONS_00049790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049790 ID=TCONS_00049790|Name=TCONS_00049790|organism=Clytia hemisphaerica|type=transcript|length=1267bp
CGCAAATTAGAATAAATGGTATGAGCAAACCAACCTCAAGAAATTGATCT
TTAGAGAGACTAAGTTTTTGTAAAACATTACtcatagaaagaaaaaaacg
gctaagaattttgaaaaagagtttCTTCCTTTGGGGgagagaaaaaatga
aatcaaaaacaaCTTCATCAGATGCAGCAAAAGAGCGTTGGAAATTCTTG
GCACAAGCGTTAaggaaaaagaataaaaacaatgatgtGACTTCATCTGA
ATATTCTGTTCGAAATTTTTCTGGCTATGATTTGTACTCTGTCAAGCCTA
TTGAGGTCGAAAACAGTTCTGAAAAATGGTGTTCTTACAAATTGAATTAT
GGCCAAACTGATGATACTGAGATTTTAGTTCGATTAGTTGGTGAACAATT
TACAGCAGAAGAGTTACGTGGTTTTAATAATACTGGAAACGTATGTATTT
GGCCTTCTGAAGAAGTCTTATCATATTATTGTTACAAACATAAACAACta
tttgaaaataaacataTAATTGAATTGGGTTGTGGAATGTCTGCGTTAGC
TGGACTTCAAGTTGCAGCAACCTTAAAGACAAAAGAAATAGTCTTGAGTG
ATGGAAATGAAAAAGGCATTGATAACTTGAATATAATGCTTAAATCAAAT
CATGATACTCTAGTATCAAAGAATGTCAATTCAGTTTTATTGAAATGGGA
TGAgggaatttacaaaaatgactgTTTAGCTCATCTTCATGGTCAATTTG
ACGTTATTATTTCAGCTGATTGTTTGTTCTTTGTCAATTTCCATAAAGCT
CTTGTCACCACTATTCAATTCCTTCTTGCTCCCGGAGGGCATTGCATCTT
TTTTGCTCCACAACGATCGAACACCTTAAATTTATTCGTAGAAGCTGCTG
GTCAGATTTTTGATGTAGAAGTAGAAGAAAATTACGATACACACATATGG
GGACGGTACCAATATCACATGCAAAATAATAAACACTTTGATAAGAATCT
GCATTATCCAATTCTAGTaaaattatcggggaaaaagtGATTATCAAACA
TAAATAATAGATGACAGATTTCAAacttatttgttgttttttttcacttt
taatagagaaacttctttataaaatatattatatCAATTTCTCATTTATC
TTTTCATATAAAAgtgtagtctacacaatagacagattcagtcttttagg
ccttactcttggtctataggcactgctataggcggccactagtgaccccc
accgggaattgcttatt
Run BLAST on NCBI

protein sequence of TCONS_00049790-protein

>TCONS_00049790-protein ID=TCONS_00049790-protein|Name=TCONS_00049790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MKSKTTSSDAAKERWKFLAQALRKKNKNNDVTSSEYSVRNFSGYDLYSVK
PIEVENSSEKWCSYKLNYGQTDDTEILVRLVGEQFTAEELRGFNNTGNVC
IWPSEEVLSYYCYKHKQLFENKHIIELGCGMSALAGLQVAATLKTKEIVL
SDGNEKGIDNLNIMLKSNHDTLVSKNVNSVLLKWDEGIYKNDCLAHLHGQ
FDVIISADCLFFVNFHKALVTTIQFLLAPGGHCIFFAPQRSNTLNLFVEA
AGQIFDVEVEENYDTHIWGRYQYHMQNNKHFDKNLHYPILVKLSGKK
Run BLAST on NCBI

transcript from alignment at scaffold_166:529385..530715+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049790 ID=TCONS_00049790|Name=TCONS_00049790|organism=Clytia hemisphaerica|type=transcript|length=1331bp|location=Sequence derived from alignment at scaffold_166:529385..530715+ (Clytia hemisphaerica)
CGCAAATTAGAATAAATGGTATGAGCAAACCAACCTCAAGAAATTGATCT
TTAGAGAGACTAAGTTTTTGTAAAACATTACtcatagaaagaaaaaaacg
gctaagaattttgaaaaagagtttCTTCCTTTGGGGgagagaaaaaatga
aatcaaaaacaaCTTCATCAGATGCAGCAAAAGAGCGTTGGAAATTCTTG
GCACAAGCGTTAaggaaaaagaataaaaacaatgatgtGACTTCATCTGA
ATATTCTGTTCGAAATTTTTCTGGCTATGATTTGTACTCTGTCAAGCCTA
TTGAGGTCGAAAACAGTTCTGAAAAATGGTGTTCTTACAAATTGAATTAT
GGCCAAACTGATGATACTGAGATTTTAGTTCGATTAGTTGGTGAACAATT
TACAGCAGAAGAGTTACGTGGTTTTAATAATACTGGAAACGTATGTATTT
GGCCTTCTGAAGAAGTCTTATCATATTATTGTTACAAACATAAACAACta
tttgaaaataaacataTAATTGAATTAGGTTGTGGAATGTCTGCGTNACA
AACATAAACAACtatttgaaaataaacataTAATTGAATTGGGTTGTGGA
ATGTCTGCGTTAGCTGGACTTCAAGTTGCAGCAACCTTAAAGACAAAAGA
AATAGTCTTGAGTGATGGAAATGAAAAAGGCATTGATAACTTGAATATAA
TGCTTAAATCAAATCATGATACTCTAGTATCAAAGAATGTCAATTCAGTT
TTATTGAAATGGGATGAgggaatttacaaaaatgactgTTTAGCTCATCT
TCATGGTCAATTTGACGTTATTATTTCAGCTGATTGTTTGTTCTTTGTCA
ATTTCCATAAAGCTCTTGTCACCACTATTCAATTCCTTCTTGCTCCCGGA
GGGCATTGCATCTTTTTTGCTCCACAACGATCGAACACCTTAAATTTATT
CGTAGAAGCTGCTGGTCAGATTTTTGATGTAGAAGTAGAAGAAAATTACG
ATACACACATATGGGGACGGTACCAATATCACATGCAAAATAATAAACAC
TTTGATAAGAATCTGCATTATCCAATTCTAGTaaaattatcggggaaaaa
gtGATTATCAAACATAAATAATAGATGACAGATTTCAAacttatttgttg
ttttttttcacttttaatagagaaacttctttataaaatatattatatCA
ATTTCTCATTTATCTTTTCATATAAAAgtgtagtctacacaatagacaga
ttcagtcttttaggccttactcttggtctataggcactgctataggcggc
cactagtgacccccaccgggaattgcttatt

Coding sequence (CDS) from alignment at scaffold_166:529385..530715+

>TCONS_00049790 ID=TCONS_00049790|Name=TCONS_00049790|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_166:529385..530715+ (Clytia hemisphaerica)
atgaaatcaaaaacaaCTTCATCAGATGCAGCAAAAGAGCGTTGGAAATT
CTTGGCACAAGCGTTAaggaaaaagaataaaaacaatgatgtGACTTCAT
CTGAATATTCTGTTCGAAATTTTTCTGGCTATGATTTGTACTCTGTCAAG
CCTATTGAGGTCGAAAACAGTTCTGAAAAATGGTGTTCTTACAAATTGAA
TTATGGCCAAACTGATGATACTGAGATTTTAGTTCGATTAGTTGGTGAAC
AATTTACAGCAGAAGAGTTACGTGGTTTTAATAATACTGGAAACGTATGT
ATTTGGCCTTCTGAAGAAGTCTTATCATATTATTGTTACAAACATAAACA
ACtatttgaaaataaacataTAATTGAATTGGGTTGTGGAATGTCTGCGT
TAGCTGGACTTCAAGTTGCAGCAACCTTAAAGACAAAAGAAATAGTCTTG
AGTGATGGAAATGAAAAAGGCATTGATAACTTGAATATAATGCTTAAATC
AAATCATGATACTCTAGTATCAAAGAATGTCAATTCAGTTTTATTGAAAT
GGGATGAgggaatttacaaaaatgactgTTTAGCTCATCTTCATGGTCAA
TTTGACGTTATTATTTCAGCTGATTGTTTGTTCTTTGTCAATTTCCATAA
AGCTCTTGTCACCACTATTCAATTCCTTCTTGCTCCCGGAGGGCATTGCA
TCTTTTTTGCTCCACAACGATCGAACACCTTAAATTTATTCGTAGAAGCT
GCTGGTCAGATTTTTGATGTAGAAGTAGAAGAAAATTACGATACACACAT
ATGGGGACGGTACCAATATCACATGCAAAATAATAAACACTTTGATAAGA
ATCTGCATTATCCAATTCTAGTaaaattatcggggaaaaagtGAatgaaa
tcaaaaacaaCTTCATCAGATGCAGCAAAAGAGCGTTGGAAATTCTTGGC
ACAAGCGTTAaggaaaaagaataaaaacaatgatgtGACTTCATCTGAAT
ATTCTGTTCGAAATTTTTCTGGCTATGATTTGTACTCTGTCAAGCCTATT
GAGGTCGAAAACAGTTCTGAAAAATGGTGTTCTTACAAATTGAATTATGG
CCAAACTGATGATACTGAGATTTTAGTTCGATTAGTTGGTGAACAATTTA
CAGCAGAAGAGTTACGTGGTTTTAATAATACTGGAAACGTATGTATTTGG
CCTTCTGAAGAAGTCTTATCATATTATTGTTACAAACATAAACAACtatt
tgaaaataaacataTAATTGAATTGGGTTGTGGAATGTCTGCGTTAGCTG
GACTTCAAGTTGCAGCAACCTTAAAGACAAAAGAAATAGTCTTGAGTGAT
GGAAATGAAAAAGGCATTGATAACTTGAATATAATGCTTAAATCAAATCA
TGATACTCTAGTATCAAAGAATGTCAATTCAGTTTTATTGAAATGGGATG
AgggaatttacaaaaatgactgTTTAGCTCATCTTCATGGTCAATTTGAC
GTTATTATTTCAGCTGATTGTTTGTTCTTTGTCAATTTCCATAAAGCTCT
TGTCACCACTATTCAATTCCTTCTTGCTCCCGGAGGGCATTGCATCTTTT
TTGCTCCACAACGATCGAACACCTTAAATTTATTCGTAGAAGCTGCTGGT
CAGATTTTTGATGTAGAAGTAGAAGAAAATTACGATACACACATATGGGG
ACGGTACCAATATCACATGCAAAATAATAAACACTTTGATAAGAATCTGC
ATTATCCAATTCTAGTaaaattatcggggaaaaagtGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031563XLOC_031563Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049790-proteinTCONS_00049790-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049790-exon-scaffold_166-1491911889:529385..529873TCONS_00049790-exon-scaffold_166-1491911889:529385..529873Clytia hemisphaericaexon
TCONS_00049790-exon-scaffold_166-1510915933:529385..529873TCONS_00049790-exon-scaffold_166-1510915933:529385..529873Clytia hemisphaericaexon
TCONS_00049790-exon-scaffold_166-1575043694:529385..529873TCONS_00049790-exon-scaffold_166-1575043694:529385..529873Clytia hemisphaericaexon
TCONS_00049790-exon-scaffold_166-1491911889:529938..530715TCONS_00049790-exon-scaffold_166-1491911889:529938..530715Clytia hemisphaericaexon
TCONS_00049790-exon-scaffold_166-1510915933:529938..530715TCONS_00049790-exon-scaffold_166-1510915933:529938..530715Clytia hemisphaericaexon
TCONS_00049790-exon-scaffold_166-1575043694:529938..530715TCONS_00049790-exon-scaffold_166-1575043694:529938..530715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:529385..530715 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.71023	2.80279	4.21178	3.67101	1.83709	2.3232	0	0.501118	0	1.24054	0	0	0	0	0	0	0	0	0	0	3.97988	2.1575	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019410Methyltransf_16
IPR029063SAM-dependent_MTases
Blast
[Close]
BLAST of TCONS_00049790 vs. Swiss-Prot (Human)
Match: CMKMT (Calmodulin-lysine N-methyltransferase OS=Homo sapiens GN=CAMKMT PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 8.441e-56
Identity = 114/303 (37.62%), Postives = 171/303 (56.44%), Query Frame = 3 
Query:  150 KSKTTSSDAAKERWKFLAQALRKKNKNNDVTSSEYSVRNFSGYDLYSVKPIEVENSSE---KWCSYKLNYGQTDDTEILVRLVGEQFTAEE-LRGFNNTGNVCIWPSEEVLSYYCYKHKQLFENKHIIELGCGMSALAGLQVAATLKTKEIVLSDGNEKGIDNLNIMLKSNHDTLV--SKNVNSVLLKWDEGIYKNDCLAHLHGQFDVIISADCLFFVNFHKALVTTIQFLLAPGGHCIFFAPQRSNTLNLF---VEAAGQIFDVEVEENYDTHIWGRY-QYHMQNNKHFDKNLHYPILVKLS 1028
            +    S+     RWK L Q L++K+ ++ +     SVR F  ++L+SV   +   + E    W  Y   +    +  I +R        E+ L  F+NTGNVCIWPSEEVL+YYC KH  +F    + ELG GM+ LAGL VA +   KE++L+DGNEK I N+  ++  N    V  ++ ++S +L+WD    + D ++ L G FD+++ ADCLF   +  +LV  I+ LL P G  + FAP+R NTLN F    E AG  F ++  ENYD HI   + +   +N   +++NLHYP+L+ L+
Sbjct:   28 RGPVVSAPLGAARWKLLRQVLKQKHLDDCL--RHVSVRRFESFNLFSVTEGKERETEEEVGAWVQYTSIF--CPEYSISLRHNSGSLNVEDVLTSFDNTGNVCIWPSEEVLAYYCLKHNNIFRALAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVQDIITRNQKAGVFKTQKISSCVLRWDN---ETD-VSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPRGKAMVFAPRRGNTLNQFCNLAEKAG--FCIQRHENYDEHISNFHSKLKKENPDIYEENLHYPLLLILT 320
The following BLAST results are available for this feature:
BLAST of TCONS_00049790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMKMT8.441e-5637.62Calmodulin-lysine N-methyltransferase OS=Homo sapi... [more]
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