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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049786 ID=TCONS_00049786|Name=TCONS_00049786|organism=Clytia hemisphaerica|type=transcript|length=1822bpRun BLAST on NCBI protein sequence of TCONS_00049786-protein >TCONS_00049786-protein ID=TCONS_00049786-protein|Name=TCONS_00049786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp MNETRIMKLFKSEDVDCQLLIQYSNGSVKMLNYLDGALNYGSLDELTLLHRun BLAST on NCBI transcript from alignment at scaffold_166:466108..482169+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049786 ID=TCONS_00049786|Name=TCONS_00049786|organism=Clytia hemisphaerica|type=transcript|length=16062bp|location=Sequence derived from alignment at scaffold_166:466108..482169+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:466108..482169+ >TCONS_00049786 ID=TCONS_00049786|Name=TCONS_00049786|organism=Clytia hemisphaerica|type=CDS|length=4809bp|location=Sequence derived from alignment at scaffold_166:466108..482169+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049786 vs. Swiss-Prot (Human)
Match: ELP1 (Elongator complex protein 1 OS=Homo sapiens GN=IKBKAP PE=1 SV=3) HSP 1 Score: 240.35 bits (612), Expect = 2.502e-67 Identity = 118/266 (44.36%), Postives = 175/266 (65.79%), Query Frame = 2
Query: 107 KETQFHGSEGKEAAKVKKIDTSSPVLPTDDRRTEISWRGDGQYFSISSINPASDSRCIRIFNNEGILQATNEKIEGLEQCIGWRTSGNLIACSQQKPNKHDVIFFEKNGLQHGEFTLSSKPNDKLIKQILWNPNSDILTLLIQDLSRNG----KFSVQLWTTGNYHWYLKQELTFN----EQPPSLSWDPENAYKLHIISQDGEYQQFVYIYDVIQSKGDD-ENLAMVAVIDGSQLLLTPFRQMVLPPPMAAHTISLDACINQSAF 877
KETQFHGSEG++AA ++ S+ LP DD R +++WRGDGQ+F++S + P + +R +R++N E LQ+T+E + GL + W+ SG+LIA +Q KPN+ D++FFEKNGL HG FTL ++ + +LWN +S +L + ++DL R K VQLWT GNYHWYLKQ L+F+ + SL WDP Y+LH++ Q Y + + + +S GD+ +L+ VAVIDG+++L+T FRQ V+PPPM + + +NQ F
Sbjct: 166 KETQFHGSEGRQAAFQMQMHESA--LPWDDHRPQVTWRGDGQFFAVSVVCPETGARKVRVWNREFALQSTSEPVAGLGPALAWKPSGSLIASTQDKPNQQDIVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSSVLAVWLEDLQREESSIPKTCVQLWTVGNYHWYLKQSLSFSTCGKSKIVSLMWDPVTPYRLHVLCQGWHYLAYDWHWTTDRSVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLFPHPVNQVTF 429 HSP 2 Score: 172.94 bits (437), Expect = 6.451e-45 Identity = 85/183 (46.45%), Postives = 122/183 (66.67%), Query Frame = 3
Query: 1281 HSCDSVASREINGKRYVFGLTSHFRLFMNDKEIANNCTSFFIHDDFLLLTTHAHSLRCVYIKSL---VQNAETQLDNIAFDEASRRVERGSKLVTAVMQGTAVVLQMPRGNLEYNHPRALVITHLQKLLNSLHYKQALEIMRKHRINLNLVYDNDPQLFLKNVDTFVNNVNSSNRINLFLADL 1820
+ C I + V GLT R F+ND E+A+N TSF ++D+FLLLTTH+H+ +C ++ A ++++ E R+VERGS++VT V Q T +VLQMPRGNLE H RALV+ ++K L+ L +K+A E MRK RINLNL+YD++P++FL NV+TF+ ++S N INLF +L
Sbjct: 605 YPCTQTELAMIGEEECVLGLTDRCRFFINDIEVASNITSFAVYDEFLLLTTHSHTCQCFCLRDASFKTLQAGLSSNHVSHGEVLRKVERGSRIVTVVPQDTKLVLQMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDHNPKVFLGNVETFIKQIDSVNHINLFFTEL 787 The following BLAST results are available for this feature:
BLAST of TCONS_00049786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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