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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049785 ID=TCONS_00049785|Name=TCONS_00049785|organism=Clytia hemisphaerica|type=transcript|length=479bp tattttcaaaGCCTTCATGGAAAAAAGAATACACGTTCTCTGAATGTTAT GGGGCTAGTATCTCAGCAAAATCCATCCAAGATATTGTACAGAATGTCAT CTCCTCATCTGACAACTCAACCTGGGTACGTTACATGACTCATATGAGAA CGTTGTATGGTGGTTTTTCAACTGAAGTTATGTTCAGAGAGTATTGTGGT GCACAACATTTTACTTTGGAAGCTTACTTAGCTTGTGTGAAATATTATGA GACCAATGGATTTTGAATCCGTCGGTTTTTTCGATTGATTCTCTAAACGA GATTGTGTATTTGGCATCCAAAAATGAAGTCTTTGGATATAACACCATTA TGAAAGAGTGTGCATGTGAACTTTCACTGGAAAAAGAAGGATACCTTTCC CCAGCAGAAGATGATCGAATTGTCGCATTCAATTTCCTTCAAGATCAAGA AAGTTTATGGATTATTACTTCAAAAGGTG Run BLAST on NCBI transcript from alignment at scaffold_166:461250..463050+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049785 ID=TCONS_00049785|Name=TCONS_00049785|organism=Clytia hemisphaerica|type=transcript|length=1801bp|location=Sequence derived from alignment at scaffold_166:461250..463050+ (Clytia hemisphaerica) tattttcaaaGCCTTCATGGAAAAAAGAATACACGTTCTCTGAATGTTAT
GGGGCTAGTATCTCAGCAAAATCCATCCAAGATATTGTACAGAATGTCAT
CTCCTCATCTGACAACTCAACCTGGGTACGTTACATGACTCATATGAGAA
CGTTGTATGGTGGTTTTTCAACTGAAGTTATGTTCAGAGAGTATTGTGGT
GCACAACATTTTACTTTGGAAGCTTACTTAGCTTGTGTGAAATATTATGA
GACCAATGGATTTTGAATCCGTCGGTTTTTTGTGAGTAACTAACAGAAAA
CAATGTCATGTTTTTGTTGTCCTATTtagatttttaataattttcatttt
tcaaatatacaaTATTTTGGAACctattttttaacctttttactCAGTTT
CTCCTAACTACTGTTTTTTGTTATACCCACATACATATTATTTTAATGAT
ATGAATTTTCAATTACATTTTGAATTCATATAATTGTGTAGACATCAGTG
GGCATTGCAAGGGGAATCGAATGACCTTACTTTCCAAAAAGACGAACTTG
CAAGCTACAATCAGCgtcgaaatatttggcacaaaaggagaattccctca
aaactttgtAACTGCAAGTGATTATTAAGTGCTTTAACGTACAGTtaaaa
agtagagttttaactctgagttttaacatgaggcTTAAAACTTTagaacc
ttaggatctcaggatctaaaagctcaaaaatgttccaataaggctgagaa
tatagcctggaagccactaaggccctcccaaatcgaaaaatccaattaag
caaagtggaagtactcACTTCTCGTTtgagctttaaattctgaaaaacgt
taagatacccaaaattgccaatatatttcggcgctgattgtagtTCAATC
AAATCTTTAATTATTTTAGATCCTCATTTAGTATGTTTTGTCTTCCCAGA
Tccaggaaaaaatttttcttcttcttaattgtgacttcccaagcgattta
aagtacctgaaaatcagaCTGGTCTAGGTTCGGTATTACGAGCGGTCTAG
TAGtggtcaaatttttattttagatcGGCTTACAAACCTTCTAGAAATGT
GAACTCTAACGGTCCTGGCTCCTTCTAGACGACTAAATTAACTAGACTAg
taaattttggtaaatttttactGGTCATTTACCGACCCTTAAAAGACCCG
TTTAAAGACCGTTTAAAGACCGTTTAAAGACCGGTCCCATTTTCAGGTAT
TTTAAATCGCTTGCTTTGTGTTctttcagaaagaaaaaaactaaacagaa
tatttaataaaaatgagaaatttgaTATTGAACGAAAAACTTGTCTTGGA
AACTGGCATTAAGAATGTTCTGTTCACAGCGATTGATTCTCTAAACGAGA
TTGTGTATTTGGCATCCAAAAATGAAGTCTTTGGATATAACACCATTATG
AAAGAGGTATACAGTTTTGTGTTGTTTGTATTTCAAAAAGTAATATAATA
AGATGGAATTATAAATAACCCCCAAGTTGTAACGAATCTTGGATTTTTTA
CTGAATCTCTGTTAAATTTATACTCTTTTGCTATTTGGTTTTGCAATTTA
ATCTTGACTAATGAAAGGTAATAATTTAAAATGTTATGAGtgtaatttta
aaatctttatgttcaattatttttaatcagTGTGCATGTGAACTTTCACT
GGAAAAAGAAGGATACCTTTCCCCAGCAGAAGATGATCGAATTGTCGCAT
TCAATTTCCTTCAAGATCAAGAAAGTTTATGGATTATTACTTCAAAAGGT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049785-exon-scaffold_166-1491911889:461250..461530 | TCONS_00049785-exon-scaffold_166-1491911889:461250..461530 | Clytia hemisphaerica | exon |
TCONS_00049785-exon-scaffold_166-1510915933:461250..461530 | TCONS_00049785-exon-scaffold_166-1510915933:461250..461530 | Clytia hemisphaerica | exon |
TCONS_00049785-exon-scaffold_166-1575043694:461250..461530 | TCONS_00049785-exon-scaffold_166-1575043694:461250..461530 | Clytia hemisphaerica | exon |
TCONS_00049785-exon-scaffold_166-1491911889:462629..462705 | TCONS_00049785-exon-scaffold_166-1491911889:462629..462705 | Clytia hemisphaerica | exon |
TCONS_00049785-exon-scaffold_166-1510915933:462629..462705 | TCONS_00049785-exon-scaffold_166-1510915933:462629..462705 | Clytia hemisphaerica | exon |
TCONS_00049785-exon-scaffold_166-1575043694:462629..462705 | TCONS_00049785-exon-scaffold_166-1575043694:462629..462705 | Clytia hemisphaerica | exon |
TCONS_00049785-exon-scaffold_166-1491911889:462930..463050 | TCONS_00049785-exon-scaffold_166-1491911889:462930..463050 | Clytia hemisphaerica | exon |
TCONS_00049785-exon-scaffold_166-1510915933:462930..463050 | TCONS_00049785-exon-scaffold_166-1510915933:462930..463050 | Clytia hemisphaerica | exon |
TCONS_00049785-exon-scaffold_166-1575043694:462930..463050 | TCONS_00049785-exon-scaffold_166-1575043694:462930..463050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_166 | supercontig | scaffold_166:461250..463050 + |
Blast
The following BLAST results are available for this feature:
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