TCONS_00049782 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049782
Unique Name	TCONS_00049782
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1850

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_166:358137..364908+

transcript sequence

>TCONS_00049782 ID=TCONS_00049782|Name=TCONS_00049782|organism=Clytia hemisphaerica|type=transcript|length=1850bp
ATTAAGTGTTTTTGTGGTTTGGGATCTTGGCATTAGACGGAAATTAAATC
TCAAGATTTGTTATTGACAAAGTAATACTCGTGGCTTAGATTGGACTTAC
ATGTCGACAGATGTGATATGCCAGTTGGCTTATGACGGGAAACTGGAAGA
ATTGCAAACGAAATTGAGGACCGATTTGAAACTGGCAAGCAAAAAGTTTC
AGGACGAACGTCAACCATTACATTGGGCATGTTCAGGGGGCCATGACATT
ATCGTGGAATATCTTCTAAATGTTTGCAATGCCCCCGTCGACGAACCCGA
TGACTCTGGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGTCGTGAAA
ATATCGTCAAAATGCTGTTAGATAAAGACGCCAACCCAAACAATCTGACT
GCCACCGGACAATCCGCCCTTCATTATGCCGCCTCTCGCAACAGATACAG
GATAGCGGAACTGCTGGTTGCTTCAAACGCAGAATTGAACGTTCAAGATC
AAACGTCATTCGCCACGCCTCTCCACAGGGCTGCTTCAAAAGGTAATTTG
AAGATCGTGAAATTATTGTTGGAGAACGAGTGCAATCCTAACTTGAAAGA
CGCTGAAGGAAATACTCCACTACATTTAGCATGCGAAGAAGAACGAACAG
AAGTAGCAGAAATACTGATCCAGTATGGTTCATCCATTACCTTATTCAAT
AAGGTGTGTATAAACTTAGCTTGTGTGTTTTGAAATACGAAGGTTGGCTA
GCCAGCCTTTTGTGATGTGAAAAACTTCCAAAGAAAATGGTAGTTGGTAC
TGCACTTGAAATACAAAATATATTACTGTCTTGTTAGAAAGattattttt
gagttttctgaaaaatcatcaaaatatgccttgtccggggggtcaactga
tgcttgtccgggtggtaaaacccgttgtccggggggaccaaaagtcactt
tgtccggggggtaaatcactgaaaattgttatatcctccatccccatatt
caaattttttctagaaaatcccatttcatattttaattttcgaaaattta
aagccTTTGTTTACCTCAATTCATTTCTTTTATCCGCAGGAAGAGAAAAC
ACCAATCGAACTCGCTCCTCCCTATTTACAAAGGAGACTGGCGGAGAGTG
AAGACAGTAAAAGTTGATTATGATTCTTTTGCACATGCGTAGAAGAGAGG
TTTGGCAgattttgtgttttcccttcGTAGATTTTATTAGAAATGCTTCA
GGGGTATTTGGTGTATTATTTCTGTGAAAATGCGGGAAGTGAATTTATTT
TTGGTGAGCAGAAGCAGGATCACCACCAATGAAGTATaaccccgaagggc
tagaatcgaatctccttggtaggatttgaagccaacaaatcctaccaaac
ttgcgcggccttgagcgacctgCCTGGTTTTTACGCAAATGACggattaa
aactaaaatttaccgcttaatttcgaaaaaaatatcactcgaaaacaaag
gaattgctagattcaatccgtcataaaaaatacggCGTAGATTTTAAAGG
CTTCCagtttttcttgcctgagaaaggttagcgattcgattctagccctt
cgggcttatacttcattgatcaCCACTACTGATTGAGTCGTAATGACGTC
ATCCGTCCgttttaaccaatcagagaacatttctttaaaagttttattta
ttttatgaattttttataaattcttATACGAAAATCATTGTAAAAGTATG
CTTTGTTCATATTATtcttaaaattgcattttttcgccattttatttttt
tcgtaaaatttttgtgtttctatacatcagacaagaaaaaagaaattgaa

Run BLAST on NCBI

transcript from alignment at scaffold_166:358137..364908+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049782 ID=TCONS_00049782|Name=TCONS_00049782|organism=Clytia hemisphaerica|type=transcript|length=6772bp|location=Sequence derived from alignment at scaffold_166:358137..364908+ (Clytia hemisphaerica)
ATTAAGTGTTTTTGTGGTTTGGGATCTTGGCATTAGACGGAAATTAAATC
TCAAGATTTGTTATTGACAAAGTAATACTCGTGGCTTAGATTGGACTTGT
GAGTGTATTCCTTTTCTTCTCTTAAAGGCCTCTTTTAGATAAATTTCGTC
ATAAAGAAATATTTGTGGAATCACCAATCTTAACATTGTAGAGCTTAGGC
ATTATTTTAGGAGTAGAATTTCCTCCAGCCACTTATATATCTGAAAAGTT
GAACACAGAAATCTTTTTAGCTGTAATACCTATGGGCTGGATAGGACAGA
TACAGATATACATATGATATGAGGCACTTTAATTGCTCTAAACAGCTTTT
AATAGTGTTTTGATTTGCTGTTTAATCCTTGATGTCCTTGATATGTTGAA
TATTAGACAGCTGGTAATTAAAATTATGTCATTATAGAGTGGTGGAGTTT
TTTAGGGCCTAATAATGGCACACTGTTTTATTTCGTTTAAAGTTTCATGA
TTTTAAGAAGTTAAAGCAATTATCGGTAACGCTTTTGAATCGTGTGTTCG
AGTTTATAAGGATTTTGATCGGGCTCCATTACAGTTGCACGATTCTTTTC
TTGAGCAAGTGTTTTGCTCCTTGTCAAGCCCCAGAACATGCTGAAGGCTT
TATTGTTTTAAGATCCAATTCTGAGTCAAGATATTTTTAGAGTGATATGC
TTTTAAAGATAGACTGATTATGGTCGAGTTTTGATTTAAAGTCACATGTT
TTCCTCCCACAACTCTTGTGGTTTTAGTAGAATGTTTTCATTTACCTTGT
TTTTGGAGCCTGTCTGTAAAAGTTGGTGTTTCATAATTCTTCAACGTGAT
CAAGGCTGAAAGTACCGGTCACATTTGAGAGATCATTTTGCGATTACAGA
GTACACGCGTTTCTTGAGGTTATAAAGGTTGGATAATTCGATTTGATGAT
AAAAATTCGtttcatttgtttgtttgtttgtttgtgttAACTTATATGAT
TTCGTTATCCTTTTGGAGCTCTGTTGTCAGACCGCGAAGCTTCTCCGGTT
TTTTTAGTGGAACAGAACTTCTTTATTCCtttgataaatctttttctcaa
aatctcgTTTCAATTTGCGTGAGTAATTacaaaaattgaccaaaatgaCT
TCTTaatgggaactaattttgagaAAGTACAACTACAtctctttttcaaa
agttgTTTTATTGGTCTATCAACTTTGAATACATACAATTACAAAGTTTT
TACAGAACTTTCACTTATTGATCAATCTGTTTGTGGTAGTGTGTACAATT
GCAGAGAATATTGGAAGCCAGCTACAACTTCACAAGCGATTGTCGTGAAC
ATTTTGTATTTGTTTAATCACAAGAGAGCTATAAACTGAGTTAATAAATT
CGTAAGAAATAACGTTGTGACTGCCAGGAAGTCTTACACAATGAGGAAAC
TTATAGGGCTATCATCGAGAACCAACCGTAAACTGATCAGTCCCTCACCT
TTCCTTGATTTAGACATGTCGACAGATGTGATATGCCAGTTGGCTTATGA
CGGGAAACTGGAAGAATTGCAAACGAAATTGAGGACCGATTTGAAACTGG
CAAGCAAAAAGTTTCAGGTAAGTAATGTCTACTTTTTTAGTTTGTGTAAT
TTTTAGTGGGTCTTTGGTGATCTCATCATAGTTTAAAGTCTAGATGTAGT
GATAATACGCTGTTCTCGAGATCTTCAAAATCATCGTGTTTGAACACGGA
CGTTGGGAATTATAACTTTAGCAAGCGATGGCGATGGCAACAAAATTTGG
AATAATTTTGTACACTATTGATAAGAGTGTTTTTAAATCTCTTCGAAATA
CAATTTCCTTCAATAGAGAAAAATTCGTGTTTTTAGGAACTATATTTTAT
ACCACTCTCCTGAGGATAAAAGAGACCGATGTtctagttcgaattagaga
gagttggctgaattttttagaaagataATTTATTCGCGAAGCGGAAAGAA
AGACAAGACACGGGTGTTTGGTGcaatttttatgacaaaaaacGCGGACT
TCCGTATGTAGATAACATTACAGAGATGTATTGAGTATCGAGATGCATCA
TAAGATTAATCTCTCATAAAAGTCCTCTTAAACGCTAAGCATCATTTCAC
AGTTGAAGTATTTCTCAAGAGATTACCTTGCTTAAAATAGTAACAATATC
ACTTTTGGACGATattattgatgttttttttgtctAAGGAGTAAAATAAA
ATCGATAACAAATTTTCTTGGCATCGACAGTTATGATTCATTTTTTCATT
CGAGTTAAAACGATCAAGAAGTCAGAAAAATAGCAATTGCTTTATTATGT
AGCTATAGTTTGCGAATGGACCAAAATTATATTCTGATTTTGATGTCAAC
TTTATGATTTCAGATAAACGCATAGTAAAGGTTAGACACGATCGAATGTT
GATAGATGTATACCCAAAAGAGCATGCGACACTGACATTCCTACCTTCGG
CTACTTTGATGGGATTACATTTTCGCTGGGATTAAATTTGGTGGTTTAGC
TCATCTGcataatttgacattttttgagttttgtttaaaaatattttgcg
gataaggcctttccaaatttccattgggacttaaatttcgcggatgacac
ccaaatccgcgaaatttaattacaGCCAagttttatcccattaaagtata
aggTTTTGATTAATCTACCCTGTTTATTCAGAACTCCCGTATAATGGGTA
GATATACCGGTACTATGATGAGGAGGATAAGCATAAATATCCCCgtctaa
ataattatttttgtctCTTTGCAGGACGAACGTCAACCATTACATTGGGC
ATGTTCAGGGGGCCATGACATTATCGTGGAATATCTTCTAAATGTTTGCA
ATGCCCCCGTCGACGAACCCGATGACGTAAGTTATTTCTTAATCCTCAAA
ATATTTGTAATTGTTAACTGACTTGGTCATTTCGACAAGGGGTCACTATC
CGTCccaaagaaaatgaaacaagagagtgggcagaaagtttcgtgggcag
aaagtttcgcgaagtcaaaaagtcgcgaaatttagcgaatttaagtttcg
cgaattatggttttagccgaaatttcacagatagAACTTTCACGAATTCA
TATAAAATTTACCTTTTTTGGTAACAAAAACttttcaggtttaatttctt
acctggccgaaactttcgcgaaaaaggatcaaaatcgcgaaaaacgcgaa
agtttctgtccgcgaaagtttctgcccttaaagtactTTAGAAGGTAATT
CCGCGAGAAATTCTGAAGAGTCGACTTTCAAAGGTTTATTTTCAAGTGAA
AAAGGATCTatctaaaaatctttctttcgtCATGAGCTTTTCTTTAATAT
GTGGCACAGTTTCTGGTCTGACACATTTCGTTTTGATGATTGTGAACTAA
GCCAGGTTTATATCTCTTTTGTTAAGAATTTAACGAAAATACATAATTAA
ATCAAGTAAAAACAGACggatcgcgaaaattaatcttcgccaaactaaaa
atttgttttgctcTCCTGAAGTATTTCATTTctatttgtccatttttcta
aataGTCTGGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGTCGTGAA
AATATCGTCAAAATGCTGTTAGATAAAGACGCCAACCCAAACAATCTGAC
TGCCACCGGACAATCCGCCCTTCATTATGCCGCCTCTCGCAACAGATACA
GGGTAAAGGCCggactccactttcgcgcgaaatgggcgacagttttctta
accttttttgcctgaagaaaagattacgtcataaaaaagtttcgcgcgaa
caaaaaaaaaagttgaaggaagttctacttttttcatccgttacgtcaat
ttcgaacaatggaattgcttcatttttcaaccgaccttTACAACAACGTC
AAAATGTTTttgctcatgtcgcgcgaaagtggagaccgacctacgtaaac
acatttttataagcatgcaATCGAGGATTATAGGAAGGGCTGGTTCGAAG
AAAATACGTACAAAGATACATTCTTTTTTATATGTATCAAAATCAATATC
ATTGCAATACTCGCTCTCAAATAGAATAATTACTTCAAACCACCtacagg
ttttttttataagaacatccaaaaatttttgaagcctttggatgactttt
cagtttccagcgttttcctaaaaaaatggTGTTTTAGTGTCaattaaagc
tttaaaatgttaatcttaaattttggccatcggagccttatattcttata
taatttcttataaaaaagtgtaaaactTACTCTTTCCCTTTTTATATCCA
AGGAACTTGATCATATCTTTCTATTATTTGTAGATAGCGGAACTGCTGGT
TGCTTCAAACGCAGAATTGAACGTTCAAGATCAAACGTCATTCGCCACGC
CTCTCCACAGGGCTGCTTCAAAGTAAGAccaaattcttttcttttcaaaa
agatCCTCTTTTTGAACAAGCCTAGTTTGAGTGTATTTGGAAGCAGGGAA
TTTTCCTAAAATCGGCTTGATTTTCAAGTGGTTTAGTCATTTTGTCTGGA
CTCTTAACTGGATGTCTAAAGGGGAGTGAGGGGTGCTTTGGTTCTATAGG
TGTccgtgaaattttctggttTCGAATTGAGGCCTTATAAGTGAAAAGCT
GCAGAGTTCAGTAAATTCTATAATatacaatgaaaaaagaattcatATTC
ATATTCGGAGTCGTAGCCGCGAAGTTTCGGTTTCGGGGAATGAGATTGGG
aaaattttaacctttttaAGGGTTTTGCCTTAAATATGCTCAAATGCATT
AgaatagtttttcttttcatttaagAGGTAATTTGAAGATCGTGAAATTA
TTGTTGGAGAACGAGTGCAATCCTAACTTGAAAGACGCTGAAGGAAATAC
TCCACTGTAAGTCATTAGTTTGTTTTTGAAAGGGAAGAATGTGGTATTGA
CCTCGAAACAGGGGGATTTGGATCAAGTTAAAAAGAGTGGAATGATTTCA
AATGTCTGTATATATTTGGTGTGCATTTGGTATTATTTTATACTGGCAGG
CTCGACCCGATCCTATTTTAACACAAGGGTTAAAAGGTGTAAGGCTCCCC
TCCCCATTTAAAGGTTTATCACAGAGCCTCGATCTGCTCCAAAAAGATGA
GGTGTTCTTACGGAACATTGTTATCGGGATCTGCTTATAGATTATAAATA
TATAAggtttcaaaatattgttaaaatctAAGTTAATTTTACATCTGTGA
TATTGGTTTTGTGTTATTTTCTAATAGCCATGGgttcaaaaatcgaaaac
caaaaagaagaataatttttagaaaatggtgctacttccaaagaccctca
ttagcatattttcattgcgctgaagcgatttcgaggggcTAAAACCGGCT
GGAATGTGTATTTTGGTCACAAGACCGGTTTTTAGGGCTCTAAAGTTAGC
TattttggcaatctctcattaactcaactttttttatttccagACATTTA
GCATGCGAAGAAGAACGAACAGAAGTAGCAGAAATACTGATCCAGTATGG
TTCATCCATTACCTTATTCAATAAGGTGTGTATAAACTTAGCTTGTGTGT
TTTGAAATACGAAGGTTGGCTAGCCAGCCTTTTGTGATGTGAAAAACTTC
CAAAGAAAATGGTAGTTGGTACTGCACTTGAAATACAAAATATATTACTG
TCTTGTTAGAAAGattatttttgagttttctgaaaaatcatcaaaatatg
ccttgtccggggggtcaactgatgcttgtccgggtggtaaaacccgttgt
ccggggggaccaaaagtcactttgtccggggggtaaatcactgaaaattg
ttatatcctccatccccatattcaaattttttctagaaaatcccatttca
tattttaattttcgaaaatttaaagccTTTGTTTACCTCAATTCATTTCT
TTTATCCGCAGGAAGAGAAAACACCAATCGAACTCGCTCCTCCCTATTTA
CAAAGGAGACTGGCGGAGAGTGAAGACAGTAAAAGTTGATTATGATTCTT
TTGCACATGCGTAGAAGAGAGGTTTGGCAgattttgtgttttcccttcGT
AGATTTTATTAGAAATGCTTCAGGGGTATTTGGTGTATTATTTCTGTGAA
AATGCGGGAAGTGAATTTATTTTTGGTGAGCAGAAGCAGGATCACCACCA
ATGAAGTATaaccccgaagggctagaatcgaatctccttggtaggatttg
aagccaacaaatcctaccaaacttgcgcggccttgagcgacctgCCTGGT
TTTTACGCAAATGACggattaaaactaaaatttaccgcttaatttcgaaa
aaaatatcactcgaaaacaaaggaattgctagattcaatccgtcataaaa
aatacggCGTAGATTTTAAAGGCTTCCagtttttcttgcctgagaaaggt
tagcgattcgattctagcccttcgggcttatacttcattgatcaCCACTA
CTGATTGAGTCGTAATGACGTCATCCGTCCgttttaaccaatcagagaac
atttctttaaaagttttatttattttatgaattttttataaattcttATA
CGAAAATCATTGTAAAAGTATGCTTTGTTCATATTATtcttaaaattgca
ttttttcgccattttatttttttcgtaaaatttttgtgtttctatacatc
agacaagaaaaaagaaattgaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031558	XLOC_031558	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_166	supercontig	scaffold_166:358137..364908 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.229522	0.0270056	1.0215	0.0615272	0.045944	0.565994	0.00205592	0.0248671	1.19225	0.0181793	0.185486	0.0407807	0.0360669	0.984335	0	0.100896	0	0	0.212245	0.910914	3.27864	0.03853

Blast

[Close]

BLAST of TCONS_00049782 vs. Swiss-Prot (Human)
Match: PSD10 (26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.898e-60
Identity = 102/201 (50.75%), Postives = 140/201 (69.65%), Query Frame = 2

Query:  101 MSTDVICQLAYDGKLEELQTKLRTDLKLASKKFQDERQPLHWACSGGHDIIVEYLLNVCNAPVDEPDDSGWTPLIIASSAGRENIVKMLLDKDANPNNLTATGQSALHYAASRNRYRIAELLVASNAELNVQDQTSFATPLHRAASKGNLKIVKLLLENECNPNLKDAEGNTPLHLACEEERTEVAEILIQYGSSITLFNK 703
            +S  ++C LAY GKLEEL+  +  D  LA++  QD R  LHWACS GH  IVE+LL +   PV++ DD+GW+PL IA+SAGR+ IVK LL K A  N +   G + LHYAAS+NR+ IA +L+   A  + +D    AT +HRAA+KGNLK++ +LL  + + N++D EGNTPLHLAC+EER E A++L+  G+SI + NK
Sbjct:    5 VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE-ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK 203

The following BLAST results are available for this feature:

BLAST of TCONS_00049782 vs. Swiss-Prot (Human)

BLAST of TCONS_00049782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PSD10	2.898e-60	50.75	26S proteasome non-ATPase regulatory subunit 10 OS...	[more]

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TCONS_00049782 (transcript) - C. hemisphaerica