TCONS_00049761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049761
Unique NameTCONS_00049761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049761 ID=TCONS_00049761|Name=TCONS_00049761|organism=Clytia hemisphaerica|type=transcript|length=1354bp
TTGCCGTAATAGTACGATTTATAGCGAGTAGCGAGTGCCTATCAATTTAC
CGTAGTACTTAAGTTCTTACcgacttttctttttatagaaCTGTAGCTTT
CTAGACGAGACATGGCTTTTACCAcgtgtggaaaaatttgaatttgtccC
TTGTGCACTGCTTGGATTGACTTTGGTTTCCGTAGACGGGAAGTCAATTA
TCACACAAGTCAAATCAGGGAGCGTTGCAGAAGAGCATGAAATCGAACCG
GGTGATTGTTTAGACGAACTTTTCGGACAATATATAGACGAGAAATGGTG
TTTAAAAGTCGGAcagttgaagaaaaaatatcaagGGAAACCAATTACAG
CTTGTGTTATAAAAGCGCGTTATAAAGATGGGCGTTGGTTTCCACCCTTA
TACAAACGTTACCAAGTGCTCTGCGCTGAAGGGCGTTGCTCCATGACCGC
CACTGAATTTCAACAAAGGAAAAGCGAATCTCACGAAACTGACAGTGAAA
AAGTaacatCGCAACATACATTCACAATAGACTATTTAGGTTTTCATAAT
GTTGGAGAAAATGGTAGCTGTATTTACGTTCAAGACGGCATCGATAATGT
TCTCAAAGCTGACAACCAGAAGAGAACAGTGAAGATGCAATTGCTGGAAA
GAGATATACTGGTCATGTTTTCCGACACTGGAGAGGTGCTAGGTCGTTTC
TCGTATACGGAGACTTCTTCGTGCGGTATCAAAGATGATCAAACCAACAT
ATTTGGTTTCATAGCTGGGAACACAACATGTTCATTCGCTGATTCATTCG
ATTGTCACGTGTTTTCATCACATGATCCATTCATTGCGAGGACAATTATA
GATGGTATTGGTAAAGGGTTTGACCGTTCAATTTATTGTGTGTAGCAAAA
CCAATGGAAGATGTCGTGAAAGAACTTttaattagaaaaattttctggcT
TTCGAATGCATATTGTTTGCGAATAATGATCCATTCtggaaatgaaaata
tttatggAGACGAATAACAAAATACGCATGGCAGAATTTTCAAAGATGAC
TTATTTTCGAAATACATTGATACTTAAACGGCTGCACTCCCAATCGTTTG
CCAAAAACCATTTGCGATTGGAGCAATATGTACATTTGCTATTGTTATCA
TAGGATAGTACATTTTAGAGAAGTTTTTATGGTTACATGTGTTACACGCG
TTACATTACGAGATGGTTATCGACAGTTTCGCGATATCAACGATAAGTAT
CGATGGTTTTTTTTCACCACAGCTAATCATGTGTTTTCTTGAAGCGATAG
AGATCTCCGTTCGGGCTTATGTGGATTAATGCAAAATTCAAACTGTTATT
TAAC
Run BLAST on NCBI

protein sequence of TCONS_00049761-protein

>TCONS_00049761-protein ID=TCONS_00049761-protein|Name=TCONS_00049761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MTATEFQQRKSESHETDSEKVTSQHTFTIDYLGFHNVGENGSCIYVQDGI
DNVLKADNQKRTVKMQLLERDILVMFSDTGEVLGRFSYTETSSCGIKDDQ
TNIFGFIAGNTTCSFADSFDCHVFSSHDPFIARTIIDGIGKGFDRSIYCV
Run BLAST on NCBI

transcript from alignment at scaffold_166:241441..249775+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049761 ID=TCONS_00049761|Name=TCONS_00049761|organism=Clytia hemisphaerica|type=transcript|length=8335bp|location=Sequence derived from alignment at scaffold_166:241441..249775+ (Clytia hemisphaerica)
TTGCCGTAATAGTACGATTTATAGCGAGTAGCGAGTGCCTATCAATTTAC
CGTAGTACTTAAGTTCTTACcgacttttctttttatagaaCTGTAGCTTT
CTAGACGAGACATGGCTTTTACCAGTAAGTAATCTCTATTCTTTATTAAT
CACTACGCATGCGCAATTTCTTAATAATACGGGGGGGGGTAAACGTGCCA
TGAGAGAATAAGAGAATTCTTGGCGAGTTTTTTAAAGTGAATCAAAGAAG
CATTTGATTGTCGTTTCTTACAATCTCAGGTTGATTTTAATGCGGCCTTA
GGTTTTTTTGGGTTGAATTTTCGATTTACcttaaattttggcgaattcgc
TGGATTTcggtagactggagtcgtttattaTAATGCGTCTAactacagta
gtataggcgttatatgataatacgattattgttacgggatttagccaaaa
taatttatgaatcaaagttttcatgattttccaaaataatcCATATTTTT
TGTCTAAAATCCTCATTCTGTGGCAAAAAAGTAACAATTTACCCTTACAT
ACGTAAATATTAGTTCTcctcaaaattaaaattttgcgtTACTAACCAAG
ATAAGTTCTCTCTGTAATCAGTACTCTAAAAAGTAGAAATGTCGCTTATA
GGGACAGCTTTTTAATTTAGTATATATATTAACactttcttatcctcttt
tagcgtgtggaaaaatttgaatttgtccCTTGTGCACTGCTTGGATTGAC
TTTGGTGTAAGTAAATTGTACGGCGTGAAAGACTTAGTCGGgatattttt
tcaacatttcctCAAAATACGGAAGTTACAGCCCTGCTGAACTAGACTcg
atgaaattattttgaaattattaacaatcctaatttttttttctcgataa
gGTATTGCCAGCTGGTATAATTCGTTAAAATAGCGTCAATCTAACATCCA
TATGGCGCTTAATAGACATCCAAACAAAGTTTCATCCTATTATTACTTAC
TTTCTGATTTGTATAGTTCCGTAGACGGGAAGTCAATTATCACACAAGTC
AAATCAGGGAGCGTTGCAGAAGAGGTActtgtatttttcttttcttcatt
tcGCTCCCCTTTTTCTCCAACGGGTAGACATATATCGAAAAAAGAGGACT
TCAGTTCGCCCGCGTTAACTGGGAATACACAAATTTCCTATTAGCAAATT
CATATTGAAAAGgcacgaaaaaacgtcgagtaaagctctgattggctgag
acaTGCAAAGATTGCCTTATACtatggacattttgaaaaagatatgTGTG
CAATATTCAGCCAATCGgagctttactcgacgttttttcgtggctttttt
acatgaatctgctaGTAGGAAATACGTGTATTGTCTCAAAACTAACtata
tttttatcgtttttttatAGCATGAAATCGAACCGGGTGATTGTTTAGAC
GAACTTTTCGGACAATATATAGACGAGAAATGGTGTTTAAAAGTCGGAca
gttgaagaaaaaatatcaagGGAAACCAATTACAGCTTGTGTTATAAAAG
TAAGTGTGTTTTTGACGAATTCATTGTATATTTCTTACCATCTGACATTT
AAGATCAGCTTTTGCAAAGAAAACTCGAGTTTAAACCTATTGAGTGCCAC
TTGCAGAATAAAAGACCGTTGGATTTTTTTGATCCTGTATCGGTAGGTCT
GAACCTAGCAGCGCCGCCAACCCAAGCCTCCCCTTTTTACCCCGTCCGAA
CAAAGTAGAGATCGGCGTTTTTTTCCTAGTttggtagactggagtcgttc
ataatgcgtgtaatacaatagtataggcgttatacgATGGGATAATATGA
TTATTGTTTCGGGattttgttccctccattactttttgctttaagCTTGC
TAGACTACTAATTCGGGTGTATACGCAAATTtgcaatcaaaaatatttga
acatTTAAAGTGTTGGTATTTAAAGGTGGACGGTGtacgttttctaattt
tttccatCATTTATATCATGTAGGCGCGTTATAAAGATGGGCGTTGGTTT
CCACCCTTATACAAACGTTACCAAGTGCTCTGCGCTGAAGGGCGTTGCTC
CATGACCGCCACTGAATTTCAACAAAGGAAAAGCGAATCTCACGAAACTG
ACAGTGAAAAAGTGTAAGTTAATCCTGGTTAATCGCTTACTACATAGATT
TTAGGGGAATTGACGAAATTTGTATAGTAGTGAAGGTTAGAATGTTTTTT
CCGTCTCATTTCAtaatcattttcataaattacgtcgcAAACCTTGTCTT
GAAACGATCACTTTCAAAGCTTAATTCGTTTGTCAACTGGAAAAAAAGTA
TGCAGCTATATAGAGCTTCGTCTtttctgtacacagacccgatatctacg
gctaatttcaaaattcattgccgtactacgaagcgataaacgtgatatac
actctggtacagagtaagcTTCGTCAAGAGTGAGTTGAGTCATCACTGAT
CTCTAAATAGTTGACTGGGATTTCCATATGATAGGAAGTGTGTCACtgac
taaagtctattcacgataagtgtgcactcttttttcatttacctataact
tttgaagaaattcttcaattttcataaatttggtatcattggaaagatgt
tagtgagtggaacaatttgaaattaaaaaatctttaaaaaaattctaaaa
atgaagatgaaaataaagaagaaaaaaatgaagatcttgtagaaaggtga
tatgactttcattttcactgaagtggcTCCTTGATTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatat
ctctccaacgataccaaatttataaagattgaagaattccttcaaaagtt
ataggtgaaagaaaaaagagtgcacacttatcgtgaatagactttagtct
gtcactttttattctatttaaatgttttgaaattcgaacgttcgaaaatc
tacCATAAAACAGAAAAACAACATGGCGGACTAGTCGACCATAAAACTGG
ACACGCTTTCACGGAAAATATGTTAGCAGTTATAATAGCCTATCTAGTCT
GTAAAGGATCATAATATCTTTGTTCATCATAGCGGAACTTCGAAAACGAA
GCATGAGTTGTTACCTAGCGTAATTTACCAAAAGCCCTTGATTCTCTTCG
AAGCAGCTTTCGAAAGCATACTTGAAAACTTTCTCCCGTTTCATTCTTTT
TACGAAACTTGTATAATCAACTTATGTATTTTCTTTATGGTGAATCTGTT
ATAAACAATcgaattgtttttcatttttagaacatCGCAACATACATTCA
CAATAGACTATTTAGGTTTTCATAATGTTGGAGAAGTAAGAGTCTTTAGT
TTCCTTTACATTTTGAATTTATAGCTGTCAttgtttcaatttcaaatata
cgaatttcctattagcagattcatgtaaaaagaGTCACGAAAAAATGTCG
AGGAAAGCTATGATTAGCTTAAAAATGCTtacataaatatatttttatga
aaatgtccagaggtaatctttgcatgtctcagccaatcagagctttactc
gacgtttaTTCGTGACTTTGTTGCATGAATCTGCTTATAGGAAAATCATG
TGTTGCAAGTAGCTATTCTAGAATATTGAATAGGCTTTTGAAATACTTGA
AGAAATCTCTATATCCTTTACATCAAAGACATCTATTCCAGACTGGTTCT
GtagtcaaaaaattttggaatgTAAAGTCATTTGAAGATTATAATGAACT
ATTATGATAAATCTTCTCCTTGAAAGTATACCAATATCTTTCTGACAATT
CCATTCTCTTTCTATATCATCACATAGAATGGTAGCTGTATTTACGTTCA
AGACGGCATCGATAATGTTCTCAAAGCTGACAACCAGAAGGTTTGATCTC
TTACGAAGAAGATATAGATTTAAGAAAAAGTTTACATTGCAGCGGTCTTT
ACGAGGAAGAGTTGCTTCGGTTTTAAGAAAATGCTCATTTAGTCGAGGTT
GATTCAAAGAACGTATAGGTAATAGATTAGGAATTACAATTAGAGAGAGG
TTTAAATTTAGCTGTTCTTTGTAAGTAAATCCATGAGCGTTCTCTGTCAT
ACAATTTGACCCTGCAAATTTATCATTATAATTGTTTTTGTATATGAATA
TTTCTAGTTAAAAATAGATAGCTGTGTACTAAGGGTTAGTTCATTTAGAA
ATATGCTTAAAAATGTGCTCAATTTGTTAGAAGTTTCTTGTAATTTGTGG
TATACAATACATTGCTCATGTTATAAGCTTTGCACGGTATActgtggggg
ggggggcgtacagtttttcggaattgcggaaatcgacccttttttcttcg
gaatttctgAATTCAGGCAAAACTCCTTCGGTATtttggaattctgaaat
tgtttcggtatcggaaatccatgaatttttgcttcgaaatttcggtatta
taaagtttttatccccttttttcggaattcatacatggaaaatcaaaatt
gatgaaaaattagtccaaatgaggaaaaatacccaaaaaaatcggtatca
gaattgcaagtatttttttacggaatttcggaaattttggcaaaattatt
cgctATTTCGGAAATCACAAACCCCGTACGCTCCCCCTATACTTGGCTTT
TATAAAACGTATGACAGGACAacactttcaaatattttaggtattcagtt
gtttttttttcgagtttCCAGCAAAGCTTTGCACTCGTGGATGCGTGTCT
TGCGAAGTTATGTTATTTCAGAACAAGTCACAAGTTTTACAAAGAAAAGT
TACAGATTTTTTTAGAACTTGAAAGGTATGTTAGTTAGTTATCGGCCTCC
CCCACCTACGTACTAGGGACATTACCACAGAAATCGTCCCCGATAGAAAA
AATACCCCGGATATCATTTCCAAAGCTTAAGTCTCGTCCCTATTTAGAGT
AACACTGAAACATTGAGAATTTTCACTGGATTTCTGGGCTATTTAACAAT
AAAATCTCCACCTAAGCAATAAACTTTCGATCACCATTTGCAGTCGCCtc
ctttttcatttcatcactGGCTGATTGAAGAATTTTCATCGGTTCACTAA
GCTAGGgatgtttttaaaatgatttcaatttgcccaaattcttttatatt
tttccaaacagatttgtaaattatttttcctGCTTTCCAAATCTAACCTT
CCTCTGATTTTATTAGGACCCCTCGTTTATTTATGAACATGGTTTATTAG
AATTTGTAAAATTTCCAGTCTCCCCCTCCCTTTTACTGGGTACTGGAGAG
TACCACCTTCCTTTTTTCATATTCTAGAGAACAGTGAAGATGCAATTGCT
GGAAAGAGATATACTGGTCATGTTTTCCGACACTGGAGAGGTATCAATCT
AATGAATTAATTATCTTGTGTTTTTAATCTTACCAGAATTTACATCAAcc
ctagcctagaaatctaagccagattgattcagtcactaggataaatctga
tggtaagttgtgactgaatatctgAATATCagtttttcaaggcaaactta
aaattcccTACATCATAAAATTCATTAAAGCGCCGATTACGCTATATTAC
CGTCAGCCTTATCTTGaccttgtaaaaactggcttggttaaccaggctaC
ATCAATCCAAGCTTCAAAAGAAAACACACCCTTCCTTCGTCTTCGAGACT
GGAATTGACAGTGCTATTTGAATTTTATCTGTAATAATCTTTTCTTTCAA
GTAAGTCAAAAAGTCGATTGCGGATAATGCGTCTTATCTTAAGATACCTT
Gctacacaaatattactaggcaagtatttaacggccttgaaatttgcacg
atctgaaattaacacaGATTTTTCTGCTTTCTCAAGGAAActggctggtt
ttaattaagggggtttttattaacacgaaatttttcaattctagtaatat
ttgtgtaataaggtactttgaaaattgtttgaactGGAAACTGTAACAGg
attttttgtttaatgttGATAAGTCTCGATGTAGCTTTTTTTACCTCTTT
TAGGTGCTAGGTCGTTTCTCGTATACGGAGACTTCTTCGTGCGGTATCAA
AGATGATCAAACCAACATATTTGGTTTCATAGCTGGGTAGGttaattttt
tatttcctgCACAGCCGGCTTTCTTCCTTGCCTATTCTATTTCACGAGTT
TTGGTTTAACTCTTTGTTTTAATTTCGCGTAAGTGATGCgcaaaaaattt
caagtaacaaaatttttaattggATAATAATGTTAATGAGCGCagttttc
aactaatcaaatttaattcacttgattttttttcacgtacatgatatgaa
atcaaaacaaaaaaatgatttgaacCCCTCCCCCCTGTATTGTAAATAAA
GTGGGTAGAAAGTTGGCtgtcttttgacgtcaatgcaaatGAATTCCTTT
AATCTCAAACGCTAAGTAAACATTGATAAGCCGATAATACGCTGGGAACA
AGGTTGGTGTCCTTTAAATTCGCTTGGTATGATGACAAACACCCAAAGAG
CCAtctatgtaatttttttttctcttttttttttatatccaGGAACACAA
CATGTTCATTCGCTGATTCATTCGATTGTCACGTGTTTTCATCACATGAT
CCATTCATTGTgagttggaattttttattgaaaattgtagattaggcgag
accaatttgattagttgtttaataaaacaacataaaacaacaaatttaat
tggctacgtagataaaaaaaatgaaaattctcgTATGATTTAATAATCAA
TGTAATAAATTGAATTTAATTATGGCACATGAGAACTTTAAGAGTAACTT
TTCTTCAAGAGAATGCCACTCTCCAAATGTTTACACTCCCTAAAAACTCT
GGTCTCAATAggtcatttcacagtcgcaaagcgtaatgggtaatcaggac
cactgcacGCTattgacgacttactattggtccgaagttttgaaaatatt
ttaagattttagcgtctagccaacgggaagccattatggaggcgcaatca
gtcattattacccatgatccatttcgacttgAAACGGCTTATATCTCTCA
AATCACCGGACTATTACAAATCAAGATCAATCAATCGAAGACGAAATATG
CTGGAATTTTTCATTTCTCGCATGTTCCTTTAAagtgtttcaaccaatca
aatgacatcactctttcattttgaattcGTGTCCACTCCCAAACTAAGAA
AGGTATACCTGCTGGATTCTTTGGTCCGGGTAGATTCTGCCTTTGGATCC
TTGCAACTccttgaaaattatattttgtttcCTATTCGTAATCTTTTTCC
TTGTTTCTTTCTTTAGGCGAGGACAATTATAGATGGTATTGGTAAAGGGT
TTGACCGTTCAATTTATTGTGTGTAGCAAAACCAATGGAAGATGTCGTGA
AAGAACTTttaattagaaaaattttctggcTTTCGAATGCATATTGTTTG
CGAATAATGATCCATTCtggaaatgaaaatatttatggAGACGAATAACA
AAATACGCATGGCAGAATTTTCAAAGATGACTTATTTTCGAAATACATTG
ATACTTAAACGGCTGCACTCCCAATCGTTTGCCAAAAACCATTTGCGATT
GGAGCAATATGTACATTTGCTATTGTTATCATAGGATAGTACATTTTAGA
GAAGTTTTTATGGTTACATGTGTTACACGCGTTACATTACGAGATGGTTA
TCGACAGTTTCGCGATATCAACGATAAGTATCGATGGTTTTTTTTCACCA
CAGCTAATCATGTGTTTTCTTGAAGCGATAGAGATCTCCGTTCGGGCTTA
TGTGGATTAATGCAAAATTCAAACTGTTATTTAAC

Coding sequence (CDS) from alignment at scaffold_166:241441..249775+

>TCONS_00049761 ID=TCONS_00049761|Name=TCONS_00049761|organism=Clytia hemisphaerica|type=CDS|length=3171bp|location=Sequence derived from alignment at scaffold_166:241441..249775+ (Clytia hemisphaerica)
ATGACCGCCACTGAATTTCAACAAAGGAAAAGCGAATCTCACGAAACTGA
CAGTGAAAAAGTaacatCGCAACATACATTCACAATAGACTATTTAGGTT
TTCATAATGTTGGAGAAAATGGTAGCTGTATTTACGTTCAAGACGGCATC
GATAATGTTCTCAAAGCTGACAACCAGAAGAGAACAGTGAAGATGCAATT
GCTGGAAAGAGATATACTGGTCATGTTTTCCGACACTGGAGAGGTGCTAG
GTCGTTTCTCGTATACGGAGACTTCTTCGTGCGGTATCAAAGATGATCAA
ACCAACATATTTGGTTTCATAGCTGGGAACACAACATGTTCATTCGCTGA
TTCATTCGATTGTCACGTGTTTTCATCACATGATCCATTCATTGCGAGGA
CAATTATAGATGGTATTGGTAAAGGGTTTGACCGTTCAATTTATTGTGTG
TAGATGACCGCCACTGAATTTCAACAAAGGAAAAGCGAATCTCACGAAAC
TGACAGTGAAAAAGTaacatCGCAACATACATTCACAATAGACTATTTAG
GTTTTCATAATGTTGGAGAAAATGGTAGCTGTATTTACGTTCAAGACGGC
ATCGATAATGTTCTCAAAGCTGACAACCAGAAGAGAACAGTGAAGATGCA
ATTGCTGGAAAGAGATATACTGGTCATGTTTTCCGACACTGGAGAGGTGC
TAGGTCGTTTCTCGTATACGGAGACTTCTTCGTGCGGTATCAAAGATGAT
CAAACCAACATATTTGGTTTCATAGCTGGGAACACAACATGTTCATTCGC
TGATTCATTCGATTGTCACGTGTTTTCATCACATGATCCATTCATTGCGA
GGACAATTATAGATGGTATTGGTAAAGGGTTTGACCGTTCAATTTATTGT
GTGTAGATGACCGCCACTGAATTTCAACAAAGGAAAAGCGAATCTCACGA
AACTGACAGTGAAAAAGTaacatCGCAACATACATTCACAATAGACTATT
TAGGTTTTCATAATGTTGGAGAAAATGGTAGCTGTATTTACGTTCAAGAC
GGCATCGATAATGTTCTCAAAGCTGACAACCAGAAGAGAACAGTGAAGAT
GCAATTGCTGGAAAGAGATATACTGGTCATGTTTTCCGACACTGGAGAGG
TGCTAGGTCGTTTCTCGTATACGGAGACTTCTTCGTGCGGTATCAAAGAT
GATCAAACCAACATATTTGGTTTCATAGCTGGGAACACAACATGTTCATT
CGCTGATTCATTCGATTGTCACGTGTTTTCATCACATGATCCATTCATTG
CGAGGACAATTATAGATGGTATTGGTAAAGGGTTTGACCGTTCAATTTAT
TGTGTGTAGATGACCGCCACTGAATTTCAACAAAGGAAAAGCGAATCTCA
CGAAACTGACAGTGAAAAAGTaacatCGCAACATACATTCACAATAGACT
ATTTAGGTTTTCATAATGTTGGAGAAAATGGTAGCTGTATTTACGTTCAA
GACGGCATCGATAATGTTCTCAAAGCTGACAACCAGAAGAGAACAGTGAA
GATGCAATTGCTGGAAAGAGATATACTGGTCATGTTTTCCGACACTGGAG
AGGTGCTAGGTCGTTTCTCGTATACGGAGACTTCTTCGTGCGGTATCAAA
GATGATCAAACCAACATATTTGGTTTCATAGCTGGGAACACAACATGTTC
ATTCGCTGATTCATTCGATTGTCACGTGTTTTCATCACATGATCCATTCA
TTGCGAGGACAATTATAGATGGTATTGGTAAAGGGTTTGACCGTTCAATT
TATTGTGTGTAGATGACCGCCACTGAATTTCAACAAAGGAAAAGCGAATC
TCACGAAACTGACAGTGAAAAAGTaacatCGCAACATACATTCACAATAG
ACTATTTAGGTTTTCATAATGTTGGAGAAAATGGTAGCTGTATTTACGTT
CAAGACGGCATCGATAATGTTCTCAAAGCTGACAACCAGAAGAGAACAGT
GAAGATGCAATTGCTGGAAAGAGATATACTGGTCATGTTTTCCGACACTG
GAGAGGTGCTAGGTCGTTTCTCGTATACGGAGACTTCTTCGTGCGGTATC
AAAGATGATCAAACCAACATATTTGGTTTCATAGCTGGGAACACAACATG
TTCATTCGCTGATTCATTCGATTGTCACGTGTTTTCATCACATGATCCAT
TCATTGCGAGGACAATTATAGATGGTATTGGTAAAGGGTTTGACCGTTCA
ATTTATTGTGTGTAGATGACCGCCACTGAATTTCAACAAAGGAAAAGCGA
ATCTCACGAAACTGACAGTGAAAAAGTaacatCGCAACATACATTCACAA
TAGACTATTTAGGTTTTCATAATGTTGGAGAAAATGGTAGCTGTATTTAC
GTTCAAGACGGCATCGATAATGTTCTCAAAGCTGACAACCAGAAGAGAAC
AGTGAAGATGCAATTGCTGGAAAGAGATATACTGGTCATGTTTTCCGACA
CTGGAGAGGTGCTAGGTCGTTTCTCGTATACGGAGACTTCTTCGTGCGGT
ATCAAAGATGATCAAACCAACATATTTGGTTTCATAGCTGGGAACACAAC
ATGTTCATTCGCTGATTCATTCGATTGTCACGTGTTTTCATCACATGATC
CATTCATTGCGAGGACAATTATAGATGGTATTGGTAAAGGGTTTGACCGT
TCAATTTATTGTGTGTAGATGACCGCCACTGAATTTCAACAAAGGAAAAG
CGAATCTCACGAAACTGACAGTGAAAAAGTaacatCGCAACATACATTCA
CAATAGACTATTTAGGTTTTCATAATGTTGGAGAAAATGGTAGCTGTATT
TACGTTCAAGACGGCATCGATAATGTTCTCAAAGCTGACAACCAGAAGAG
AACAGTGAAGATGCAATTGCTGGAAAGAGATATACTGGTCATGTTTTCCG
ACACTGGAGAGGTGCTAGGTCGTTTCTCGTATACGGAGACTTCTTCGTGC
GGTATCAAAGATGATCAAACCAACATATTTGGTTTCATAGCTGGGAACAC
AACATGTTCATTCGCTGATTCATTCGATTGTCACGTGTTTTCATCACATG
ATCCATTCATTGCGAGGACAATTATAGATGGTATTGGTAAAGGGTTTGAC
CGTTCAATTTATTGTGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031553XLOC_031553Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049761-proteinTCONS_00049761-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049761-exon-scaffold_166-1491911889:241441..241564TCONS_00049761-exon-scaffold_166-1491911889:241441..241564Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:241441..241564TCONS_00049761-exon-scaffold_166-1510915933:241441..241564Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:241441..241564TCONS_00049761-exon-scaffold_166-1575043694:241441..241564Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:242144..242196TCONS_00049761-exon-scaffold_166-1491911889:242144..242196Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:242144..242196TCONS_00049761-exon-scaffold_166-1510915933:242144..242196Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:242144..242196TCONS_00049761-exon-scaffold_166-1575043694:242144..242196Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:242457..242514TCONS_00049761-exon-scaffold_166-1491911889:242457..242514Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:242457..242514TCONS_00049761-exon-scaffold_166-1510915933:242457..242514Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:242457..242514TCONS_00049761-exon-scaffold_166-1575043694:242457..242514Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:242861..242989TCONS_00049761-exon-scaffold_166-1491911889:242861..242989Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:242861..242989TCONS_00049761-exon-scaffold_166-1510915933:242861..242989Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:242861..242989TCONS_00049761-exon-scaffold_166-1575043694:242861..242989Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:243464..243603TCONS_00049761-exon-scaffold_166-1491911889:243464..243603Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:243464..243603TCONS_00049761-exon-scaffold_166-1510915933:243464..243603Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:243464..243603TCONS_00049761-exon-scaffold_166-1575043694:243464..243603Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:245171..245225TCONS_00049761-exon-scaffold_166-1491911889:245171..245225Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:245171..245225TCONS_00049761-exon-scaffold_166-1510915933:245171..245225Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:245171..245225TCONS_00049761-exon-scaffold_166-1575043694:245171..245225Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:245718..245780TCONS_00049761-exon-scaffold_166-1491911889:245718..245780Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:245718..245780TCONS_00049761-exon-scaffold_166-1510915933:245718..245780Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:245718..245780TCONS_00049761-exon-scaffold_166-1575043694:245718..245780Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:247218..247280TCONS_00049761-exon-scaffold_166-1491911889:247218..247280Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:247218..247280TCONS_00049761-exon-scaffold_166-1510915933:247218..247280Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:247218..247280TCONS_00049761-exon-scaffold_166-1575043694:247218..247280Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:247944..248026TCONS_00049761-exon-scaffold_166-1491911889:247944..248026Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:247944..248026TCONS_00049761-exon-scaffold_166-1510915933:247944..248026Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:247944..248026TCONS_00049761-exon-scaffold_166-1575043694:247944..248026Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:248483..248549TCONS_00049761-exon-scaffold_166-1491911889:248483..248549Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:248483..248549TCONS_00049761-exon-scaffold_166-1510915933:248483..248549Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:248483..248549TCONS_00049761-exon-scaffold_166-1575043694:248483..248549Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1491911889:249257..249775TCONS_00049761-exon-scaffold_166-1491911889:249257..249775Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1510915933:249257..249775TCONS_00049761-exon-scaffold_166-1510915933:249257..249775Clytia hemisphaericaexon
TCONS_00049761-exon-scaffold_166-1575043694:249257..249775TCONS_00049761-exon-scaffold_166-1575043694:249257..249775Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:241441..249775 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.15752	7.31208	9.08643	8.3748	27.1602	21.0661	30.2355	31.6626	16.1623	13.5513	13.8438	12.9386	9.0053	7.70424	6.93214	10.9889	17.6545	20.694	6.19228	6.99678	15.2786	13.7211	8.84615	10.045	25.2498	23.7818	9.30454	4.85167	4.33325	4.48497
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH_dom-like
IPR006020PTB/PI_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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