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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049733 ID=TCONS_00049733|Name=TCONS_00049733|organism=Clytia hemisphaerica|type=transcript|length=2166bp
TAGTACACAACCTAATCCTGACGAAGTACATAAAATCACGCGTTGTTCAT
CGTCAAACAGAAGTGGTTTGTTTGTATAAGGGTCAATGCAAGCTGTTCGT
TTGCCGTTATCTACACTGAGGACACCAGTGCAAGGCGTGCAAGATCCATC
ACCCGTACCAAGTTTGATTGTATTTTCCGGACAAAGCTCACATCTTGTGC
GATGCTCCTCGTCAAGTAATGTATGGGGGCTATTCACAAGACCGTACTTC
GGCTGGAATCCAGGCAAACATTTTGTAGACGGACACTTGAGCTCAGCGAA
GGAAGCATTCTTCCAGTACTGATGGGCTTTATCATTAGTATTGACTGAAA
CCTCTTCGAAAGTATATTCGAGAAGCGGTAAAGTATATTGGCGTTTTAAG
ATATTTGTACTTTCGCTGTAAACTTGCGGTAATAGACTATAAATCCTGTC
TTCAGGATTGTGATTTAGTGCATCCCAACTTAAGATTCGTAAAAGACGGC
GTACATAATCTAACATCATAACGCGTTGCTCATCTTGGGATTGCAATTCG
TGGAGATGTTGTCGCCGTCTGTAGAACATCTCGAGTACGTTATAATTGTC
ACCATGTGGCGCATGCATATCAATGTCTTGAAAAATAACGGTTCTATTTT
CAAGGGGTTTAATTTCCTTTTTGTATCTGAACAAAGAAGCAAGTCCATAC
AGGGTTGAATCTGTGTAAGAATCCCCAAAGAAAATAGCAACGGAATTATC
GACTCCAGGTGACGTTAGAAGAGGCATGATTTTGTTGCTTAAGAAAATTG
CagggaaatccaaaaaattttcatcaataaaatttttgccatattCAAGA
AGTAAGTTAAtggttttctttttaagacaATATTTCTTCGTGTTCTTTAA
GTGATCATACGTTctctgaaaatattcttcatacCGTGTTATGGGTTCAT
TGTTTTCGCTCGATGTTTGAACATTAACAAAAGTGACGTCATATAAACCG
AATCGGCTTAAAAAATCCGTCACTNCAAGTGATCATACGttttctgaaaa
tattcttcatacCGTGTTATGGGTTCATTGTTTTCGCTCGATGTTTGAAC
ATTAACAAAAGTGACGTCATATAAACCGAATCGGCTTAAAAAATCCGTCA
CTTGTAGAGTGTAATCCGTTATCATGAAGGTTGGGTAACGTTCGTCACAG
CTCTGCGGGATACACAATCGAGCAATGAGTGGATAAAGACTGCTGACAAT
GTCTTGTATGATTTTTATCATTTCTTCAGTCACATGAGCGACTATAACTA
AGATGTTTTGTTCGCGATAAATTGGAGATTGGGTTCCATTCAACAGGGAC
CCACTTTTTGACTCCTCATCCTGAGTAGTATCACCTGTTTCAATACCCGT
GACTGGTGGAAAGAAATATTTGTGATCCAGGAACAATTCTGTTAAAAGTT
TGATCAAAGTTTCTGTGTTATTACAGACGCTATAAGGAATGAAAGTGTTA
GATTTCATGTTAATCAGCTCTTCACGAATTTCACTGATCATACGTCGAGA
CTTCAAATTAAACTCGGCGTCGGTGTCAGAATTAGACTGACGTCCGTCTT
CCGTTGAATTATCATGGCTGTCGTCGGGACATGCGGAAAAAAAGCCGATG
ATCAGAAATTGCTTTAAAATATGACCTTGTGTACTTTCTTGTACATACGA
TCTGCTCGTAACAAACATCAGCGATTGGGAAAATATAAGAATGAAAAACA
TCATTACCGCATACTGAACCATTGTCACCACCATTCAACAGTTCACGTTG
ATATTTGCGTTTACGTTAAAGTTACACGTAAGTTGACTTCACTCCTCTGA
TATCAAATCTTGGTGAGCGTTTTAGGGCCGTAGATAGTGAATTGTTAGTT
TCCTGGATAGAAGCTTAAAAGTTATCATGTGTACCAATTAGCAATCTTTA
ANGTGAATTGTTAGATTCCTGGATAGAAGCTTAAAAGTTATCATGTGTAC
CAATTAGCAATCTTTAACAATTTTCTGTGATAGCCGTAGATTTGATTTCC
AATCACAGACTGTCCGATGAAGGTCACATTATTCAAGAATTTTCTATTGC
TAGAGTTCTGTAAAAATACAAAAGTGACGAAGGTAGAATGCTTTTATACC
TCTGATGTCAGTCACT Run BLAST on NCBI protein sequence of TCONS_00049733-protein >TCONS_00049733-protein ID=TCONS_00049733-protein|Name=TCONS_00049733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MPLLTSPGVDNSVAIFFGDSYTDSTLYGLASLFRYKKEIKPLENRTVIFQ
DIDMHAPHGDNYNVLEMFYRRRQHLHELQSQDEQRVMMLDYVRRLLRILS
WDALNHNPEDRIYSLLPQVYSESTNILKRQYTLPLLEYTFEEVSVNTNDK
AHQYWKNASFAELKCPSTKCLPGFQPKYGLVNSPHTLLDEEHRTRCELCP
ENTIKLGTGDGSCTPCTGVLSVDNGKRTACIDPYTNKPLLFDDEQRVILC
TSSGLGCVL Run BLAST on NCBI transcript from alignment at scaffold_165:363432..365597 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049733 ID=TCONS_00049733|Name=TCONS_00049733|organism=Clytia hemisphaerica|type=transcript|length=2166bp|location=Sequence derived from alignment at scaffold_165:363432..365597 (Clytia hemisphaerica)
AGTGACTGACATCAGAGGTATAAAAGCATTCTACCTTCGTCACTTTTGTA
TTTTTACAGAACTCTAGCAATAGAAAATTCTTGAATAATGTGACCTTCAT
CGGACAGTCTGTGATTGGAAATCAAATCTACGGCTATCACAGAAAATTGT
TAAAGATTGCTAATTGGTACACATGATAACTTTTAAGCTTCTATCCAGGA
ATCTAACAATTCACNTTAAAGATTGCTAATTGGTACACATGATAACTTTT
AAGCTTCTATCCAGGAAACTAACAATTCACTATCTACGGCCCTAAAACGC
TCACCAAGATTTGATATCAGAGGAGTGAAGTCAACTTACGTGTAACTTTA
ACGTAAACGCAAATATCAACGTGAACTGTTGAATGGTGGTGACAATGGTT
CAGTATGCGGTAATGATGTTTTTCATTCTTATATTTTCCCAATCGCTGAT
GTTTGTTACGAGCAGATCGTATGTACAAGAAAGTACACAAGGTCATATTT
TAAAGCAATTTCTGATCATCGGCTTTTTTTCCGCATGTCCCGACGACAGC
CATGATAATTCAACGGAAGACGGACGTCAGTCTAATTCTGACACCGACGC
CGAGTTTAATTTGAAGTCTCGACGTATGATCAGTGAAATTCGTGAAGAGC
TGATTAACATGAAATCTAACACTTTCATTCCTTATAGCGTCTGTAATAAC
ACAGAAACTTTGATCAAACTTTTAACAGAATTGTTCCTGGATCACAAATA
TTTCTTTCCACCAGTCACGGGTATTGAAACAGGTGATACTACTCAGGATG
AGGAGTCAAAAAGTGGGTCCCTGTTGAATGGAACCCAATCTCCAATTTAT
CGCGAACAAAACATCTTAGTTATAGTCGCTCATGTGACTGAAGAAATGAT
AAAAATCATACAAGACATTGTCAGCAGTCTTTATCCACTCATTGCTCGAT
TGTGTATCCCGCAGAGCTGTGACGAACGTTACCCAACCTTCATGATAACG
GATTACACTCTACAAGTGACGGATTTTTTAAGCCGATTCGGTTTATATGA
CGTCACTTTTGTTAATGTTCAAACATCGAGCGAAAACAATGAACCCATAA
CACGgtatgaagaatattttcagaaaaCGTATGATCACTTGNAGTGACGG
ATTTTTTAAGCCGATTCGGTTTATATGACGTCACTTTTGTTAATGTTCAA
ACATCGAGCGAAAACAATGAACCCATAACACGgtatgaagaatattttca
gagAACGTATGATCACTTAAAGAACACGAAGAAATATtgtcttaaaaaga
aaaccaTTAACTTACTTCTTGaatatggcaaaaattttattgatgaaaat
tttttggatttccctGCAATTTTCTTAAGCAACAAAATCATGCCTCTTCT
AACGTCACCTGGAGTCGATAATTCCGTTGCTATTTTCTTTGGGGATTCTT
ACACAGATTCAACCCTGTATGGACTTGCTTCTTTGTTCAGATACAAAAAG
GAAATTAAACCCCTTGAAAATAGAACCGTTATTTTTCAAGACATTGATAT
GCATGCGCCACATGGTGACAATTATAACGTACTCGAGATGTTCTACAGAC
GGCGACAACATCTCCACGAATTGCAATCCCAAGATGAGCAACGCGTTATG
ATGTTAGATTATGTACGCCGTCTTTTACGAATCTTAAGTTGGGATGCACT
AAATCACAATCCTGAAGACAGGATTTATAGTCTATTACCGCAAGTTTACA
GCGAAAGTACAAATATCTTAAAACGCCAATATACTTTACCGCTTCTCGAA
TATACTTTCGAAGAGGTTTCAGTCAATACTAATGATAAAGCCCATCAGTA
CTGGAAGAATGCTTCCTTCGCTGAGCTCAAGTGTCCGTCTACAAAATGTT
TGCCTGGATTCCAGCCGAAGTACGGTCTTGTGAATAGCCCCCATACATTA
CTTGACGAGGAGCATCGCACAAGATGTGAGCTTTGTCCGGAAAATACAAT
CAAACTTGGTACGGGTGATGGATCTTGCACGCCTTGCACTGGTGTCCTCA
GTGTAGATAACGGCAAACGAACAGCTTGCATTGACCCTTATACAAACAAA
CCACTTCTGTTTGACGATGAACAACGCGTGATTTTATGTACTTCGTCAGG
ATTAGGTTGTGTACTA Coding sequence (CDS) from alignment at scaffold_165:363432..365597 >TCONS_00049733 ID=TCONS_00049733|Name=TCONS_00049733|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at scaffold_165:363432..365597 (Clytia hemisphaerica)
ATGCCTCTTCTAACGTCACCTGGAGTCGATAATTCCGTTGCTATTTTCTT
TGGGGATTCTTACACAGATTCAACCCTGTATGGACTTGCTTCTTTGTTCA
GATACAAAAAGGAAATTAAACCCCTTGAAAATAGAACCGTTATTTTTCAA
GACATTGATATGCATGCGCCACATGGTGACAATTATAACGTACTCGAGAT
GTTCTACAGACGGCGACAACATCTCCACGAATTGCAATCCCAAGATGAGC
AACGCGTTATGATGTTAGATTATGTACGCCGTCTTTTACGAATCTTAAGT
TGGGATGCACTAAATCACAATCCTGAAGACAGGATTTATAGTCTATTACC
GCAAGTTTACAGCGAAAGTACAAATATCTTAAAACGCCAATATACTTTAC
CGCTTCTCGAATATACTTTCGAAGAGGTTTCAGTCAATACTAATGATAAA
GCCCATCAGTACTGGAAGAATGCTTCCTTCGCTGAGCTCAAGTGTCCGTC
TACAAAATGTTTGCCTGGATTCCAGCCGAAGTACGGTCTTGTGAATAGCC
CCCATACATTACTTGACGAGGAGCATCGCACAAGATGTGAGCTTTGTCCG
GAAAATACAATCAAACTTGGTACGGGTGATGGATCTTGCACGCCTTGCAC
TGGTGTCCTCAGTGTAGATAACGGCAAACGAACAGCTTGCATTGACCCTT
ATACAAACAAACCACTTCTGTTTGACGATGAACAACGCGTGATTTTATGT
ACTTCGTCAGGATTAGGTTGTGTACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049733-exon-scaffold_165-1491911889:363432..365597 | TCONS_00049733-exon-scaffold_165-1491911889:363432..365597 | Clytia hemisphaerica | exon |
| TCONS_00049733-exon-scaffold_165-1510915933:363432..365597 | TCONS_00049733-exon-scaffold_165-1510915933:363432..365597 | Clytia hemisphaerica | exon |
| TCONS_00049733-exon-scaffold_165-1575043694:363432..365597 | TCONS_00049733-exon-scaffold_165-1575043694:363432..365597 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:363432..365597 . |
Blast
The following BLAST results are available for this feature:
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