TCONS_00049726 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049726
Unique NameTCONS_00049726
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049726 ID=TCONS_00049726|Name=TCONS_00049726|organism=Clytia hemisphaerica|type=transcript|length=391bp
CCAAAGAAAGCTGTCAATAGACGCAAACATCATCATCCACGGGGtgcgtg
aaaaagaaaatgaaaatgatatcGATTTCGTAAACGAACTTTTGAACGAC
GTCAACGTAGAAACTAAACCAACCTTCGACTCTCGAGTTGGAAAACAATC
AAATGGTGTGCGTCCAATCAAAGTCGCCTTCAAAGACAGCCATATAAAGT
ACCGCTTCATGAAGAAGTTGACTGAACTAAGACAGCACGAGAAGTACGTA
AAGTTGAGCATCACCGACGATTTAACGAAAATTGAGAGTGAGCAAATCAA
AGAATGGAAAAGAAGAGCAGACGAGATGAATAAAGCCAAGTCGAATGAAG
ACTTTAATTGGAGGGTGCGGGGAAGTCCTCGTGACAAACNN
Run BLAST on NCBI

protein sequence of TCONS_00049726-protein

>TCONS_00049726-protein ID=TCONS_00049726-protein|Name=TCONS_00049726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
QRKLSIDANIIIHGVREKENENDIDFVNELLNDVNVETKPTFDSRVGKQS
NGVRPIKVAFKDSHIKYRFMKKLTELRQHEKYVKLSITDDLTKIESEQIK
EWKRRADEMNKAKSNEDFNWRVRGSPRDKX
Run BLAST on NCBI

transcript from alignment at scaffold_165:273229..273619

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049726 ID=TCONS_00049726|Name=TCONS_00049726|organism=Clytia hemisphaerica|type=transcript|length=391bp|location=Sequence derived from alignment at scaffold_165:273229..273619 (Clytia hemisphaerica)
NNGTTTGTCACGAGGACTTCCCCGCACCCTCCAATTAAAGTCTTCATTCG
ACTTGGCTTTATTCATCTCGTCTGCTCTTCTTTTCCATTCTTTGATTTGC
TCACTCTCAATTTTCGTTAAATCGTCGGTGATGCTCAACTTTACGTACTT
CTCGTGCTGTCTTAGTTCAGTCAACTTCTTCATGAAGCGGTACTTTATAT
GGCTGTCTTTGAAGGCGACTTTGATTGGACGCACACCATTTGATTGTTTT
CCAACTCGAGAGTCGAAGGTTGGTTTAGTTTCTACGTTGACGTCGTTCAA
AAGTTCGTTTACGAAATCgatatcattttcattttctttttcacgcaCCC
CGTGGATGATGATGTTTGCGTCTATTGACAGCTTTCTTTGG

Coding sequence (CDS) from alignment at scaffold_165:273229..273619

>TCONS_00049726 ID=TCONS_00049726|Name=TCONS_00049726|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_165:273229..273619 (Clytia hemisphaerica)
NNGTTTGTCACGAGGACTTCCCCGCACCCTCCAATTAAAGTCTTCATTCG
ACTTGGCTTTATTCATCTCGTCTGCTCTTCTTTTCCATTCTTTGATTTGC
TCACTCTCAATTTTCGTTAAATCGTCGGTGATGCTCAACTTTACGTACTT
CTCGTGCTGTCTTAGTTCAGTCAACTTCTTCATGAAGCGGTACTTTATAT
GGCTGTCTTTGAAGGCGACTTTGATTGGACGCACACCATTTGATTGTTTT
CCAACTCGAGAGTCGAAGGTTGGTTTAGTTTCTACGTTGACGTCGTTCAA
AAGTTCGTTTACGAAATCgatatcattttcattttctttttcacgcaCCC
CGTGGATGATGATGTTTGCGTCTATTGACAGCTTTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031531XLOC_031531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049726-exon-scaffold_165-1491911889:273229..273619TCONS_00049726-exon-scaffold_165-1491911889:273229..273619Clytia hemisphaericaexon
TCONS_00049726-exon-scaffold_165-1510915933:273229..273619TCONS_00049726-exon-scaffold_165-1510915933:273229..273619Clytia hemisphaericaexon
TCONS_00049726-exon-scaffold_165-1575043694:273229..273619TCONS_00049726-exon-scaffold_165-1575043694:273229..273619Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049726-proteinTCONS_00049726-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:273229..273619 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.889832	0.320383	0.375809	0.578266	0.773749	0	1.32708	0.377129	1.00106	0.728852	0.649525	0	0.27998	1.27302	0.790223	0.767172	0.927397	0	1.02179	0.41043	6.92997e-06	0	0	0.0846795	0.163087	1.29563	0	0.131547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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