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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049696 ID=TCONS_00049696|Name=TCONS_00049696|organism=Clytia hemisphaerica|type=transcript|length=1500bpRun BLAST on NCBI protein sequence of DnaJ protein >TCONS_00049696-protein ID=TCONS_00049696-protein|Name=DnaJ protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp LLNFLDLEPSKAAFYANRSAALMMVEEFNKALEDARKAFNLDNKFIKAYLRun BLAST on NCBI transcript from alignment at scaffold_165:39008..46766- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049696 ID=TCONS_00049696|Name=TCONS_00049696|organism=Clytia hemisphaerica|type=transcript|length=7759bp|location=Sequence derived from alignment at scaffold_165:39008..46766- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_165:39008..46766- >TCONS_00049696 ID=TCONS_00049696|Name=TCONS_00049696|organism=Clytia hemisphaerica|type=CDS|length=16524bp|location=Sequence derived from alignment at scaffold_165:39008..46766- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049696 vs. Swiss-Prot (Human)
Match: DNJC7 (DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2) HSP 1 Score: 394.43 bits (1012), Expect = 2.340e-131 Identity = 216/397 (54.41%), Postives = 293/397 (73.80%), Query Frame = 3
Query: 15 LDLEPSKAAFYANRSAALMMVEEFNKALEDARKAFNLDNKFIKAYLRAAKCYIATGQTNNAMMTLQKAKTLEPTNKSVLSELKNVQIMADYENQSANAFEIKDYRKIEFCMRKLLEYAPSCLGYKGLQAECMAMTGKYSDAQILANDILRKDQHHSEALYVRGLCLYYQDQTERAYKLFQQLLRTAPDFKKAREAYKKAKNLEATKEEGNKAFRGGDYQEALRLYTKALEIDPINKSTNSKLYCNRATVNFKLKKMEDSVKDCTSAIELDPSYLKAYLRRAKSYMDQELYEEAVRDYEKITKMDHNHXXXXXXXXXXXXXXXXXXXDYYKILGVSKTASEQEMKKAYRKEALKHHPDRHSDADXXXXXXXXQLFKDVSEAYNILSDQQKRARYDSGQ 1205
+D+ P A++Y NR+A LMM+ F +AL DA+++ LD+ F++ +LR KC+++ G A + Q+A L+ N E KN + +YE + FE +D+RK+ FCM + LE+AP+C +K L+AEC+AM G+Y +AQ +A+DILR D +++ALYVRGLCLYY+D E+A + F Q LR APD +KA A + AK L+A KE+GNKAF+ G+Y+ A LYT+AL IDP N TN+KLYCNR TVN KL+K++D+++DCT+A++LD +Y+KAYLRRA+ YMD E YEEAVRDYEK+ + + E+++LLK A+LELKKSKRKDYYKILGV K ASE E+KKAYRK AL HHPDRHS A E +K EE+ FK+V EA+ ILSD +K+ RYDSGQ
Sbjct: 55 IDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQ 451 The following BLAST results are available for this feature:
BLAST of TCONS_00049696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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