TCONS_00049623 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049623
Unique Name	TCONS_00049623
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3053

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_162:39808..47264-
coding sequence from alignment at scaffold_162:39808..47264-

transcript sequence

>TCONS_00049623 ID=TCONS_00049623|Name=TCONS_00049623|organism=Clytia hemisphaerica|type=transcript|length=3053bp
ATCCcaccactggtggaacatcccttttttgggcaatctctttttttccc
aggcaaaaccctaagggcgaaactCATTTTttagacaatatcatgtatac
cattcgaaagttCTCAAaaaactattcatgatattcatgacgtaatgttt
tctacggaaataccccggttttagccagtagtggcaaatttaaactagac
aaaagctgtataaaatttgccactactggcaaaaaccagggtctttccgt
agaaaacattacgtcataaatatcaagaattaatatagaagacatttaaa
CGGGTTTAGCcaatttcattacctaactcgagataattcacgcagaagat
gcaatttatggtcaattttagaccaaaatgtgggcgaaaagtggaacttg
ttAATAATTGACTTCATTCACTTAGGTTTAACTGTTTTACAATTTTGATG
AGTTATATGCTTTTGTATTTAGGGATTGATTTAGAATACAAACTGGTATG
TCTTCCTCTATCGTTCATCAAGTATTAAGAGGAGGGCCGCCCAGGGCCAT
CACACGTTCAGACATCGTTGAGCCAAACCGTCTGCAAGGATTCAGTGATG
CTGTCTTCGCGACGGCTGCTACACTCCTCATTGTTCCTGTGAGGAAATTT
GAGATGGAACAAGATGAGACATTGAAAGCTGCTCTTCTTCGGCAATGGCC
TCAATTTACAGTATTTTTGTTGGGGTATTTGGTGATCTGCACTTTATGGG
AATCTCACTTCGTTCGCTACAAAGTCCTCGCAAAAGTGGATGACGTCTTG
GTAGCTATGAATCTCGTCTCTCTTATGATCGTCACTTTTCTTCCATTCAG
TGTCGATTTGGAAGGTCATTTTGCCAAATACGAAATATCCGTTCTTCTGA
ACGCTGGTTTGCTTTGTGAATTGGCGATGTTCATTTACGGGTTTTCAAAC
CCTGTGTTGTTGAGCGCTCGTTTTCAAGCGCTTGAGGAGAGCGAGAAACG
TGTCAAAAGACATCAAATCTACATCAAGGTTCTCTTGAACTGTTGCTTAT
TCTTACTGGCCGCCATCTTTAGTTTCGCTTCATTTGTGGTGGCGTATATT
TTGATTTGTTCTGTCCTGTTAACGCCCTTCATGAAACGTATCATTATCAA
ATTAACGGAACTGTCAGCACAATGCCGTTTTCATGACACCGTATCCACGT
TCGAGGTGCTCACAGGGAGAATCGACAAAGAACGGTTAGAATGTTTCACG
GACGCTGCGGTGGCAATAGTGGCCACACTTCTCATTCTTGACCTGACGAC
GGAGGATTTTCCGACGGAACAAGAAGTGGAGCGTGAAGGACTCGTAGAAG
CATTAAAAGGGTTAAAGGAGATGTTTATTTCATACGTGGGTACGTACGTC
ACTGTGGCTATCCAATGGTTCATACATCACTCAGTGGTTCACCACCTTCA
CATATTCACGCCCATCTTAGTAGTCATCAACCGAACCTTCCTCGCCTTTG
TCGCCTTCACGCCCTTCCTTTCCACCCTCAACAACAAATACACAGGTCAC
GTGAGCAGCGACGCTCAAACAGCCGTCGGCTTCTCCTCAATTATCCTTTT
CATGGGAAGTTTCACCAACGTTTTAATGATCATCGTTGCTCTATTCAAAC
CGGACATCAATTTAGTAGACTGGGCACGACCACGTGATAATGGCAACACA
GCCTTGATTTATTTAACCATCAAAGCTTTAGTTATTCCTGTCATGGCTTT
CTTGACTTTCGTCATCAGCCTGTCAGGGTTGGAAGCTTCTTACTTAGTGT
ATCACGTATGTATGTACGCCACGCCTGTCGTGTTGATTTTATTGAAGGTG
GGGTACGCTTGTCATTGGCGCCACGTTGGTGATGTGCAGCACGAAGAAGA
ACAATTGACTGAAGAAGAAAACATGGAGGGGAATGGTGAAGAGGAAGAAG
GGACGAATGAAGGTGTGGCTGTTGTGATTTGATGCGTGTCAacttttata
tttatatttttctagcACTGCGTTCATATATTGGCAGAGTTTTGATTTGT
TCGAGATTTTAAACGCGAATAAAACAGGATATCATTTTTATATACAAGCA
TCTCTCTGTTCATATAAGGAATGTAAATAAAAACTGAGACAAGCACTTTT
ACAAGCGGACCATAAAACAAGTCTTTTTGAAACGAATGAAATAAAATGAG
TTTGAAAGAAGCTGTGTGAAATGATGGGTCATCTTAAAGAGTTGTGGACA
GTTCTTAGCTTGgctgccattttgttttcagTGCGATCAATCACAACAAT
GAATtataaaattacaaaagaatGGAACGACAAATCGGCCAATCATAATC
CAGCATCTATTTCACTGTCATGGCAATCAGGGAATGATTACGTCACCGCT
ATCTTTGAGGCGCCATTTTTCGACGACCCTGCAGCGCCAAAGGGAGAAGT
TGGGAGACCGTTCCCGAAACTCTGGGATTACGAAGtGGTAGAGATTTTCT
TCTTATCTTCAAAAAGTCAAGAATATTTGGAAGTTGAAGTTTCACCACAT
GGTCAGCATCTTTTGTTGCTCCTCAAAGGCGTCCGCAACATGATCGAGGA
CGAACTTCCAATGAACTACACAGCTTCCATCGACCTTAACAACAAAACGT
GGAAAGGTCACGCGCACATCCCGCTCGCATATTTCCCGCGAAGTGTGGAC
CGAATGAATGCGTACGCCATCCACGGTTCGAATGAAAAGCGTGTATACGA
AGCGCTCTATCCAACGCCAGAAGGGAAATTCCCTCAACCTGATTTCCATC
GATTGGAATATTTCGAAGATTTCGATTTATGGAAGATCGTTACTGATAGC
TCGGTTACTATTGGTAACTACTGGAACCAATTCCCAAAGacgtgaaaaaa
gttttttttgtacttcattattttcatatttgaaaatatatcaGCACGCA
TGCTCGTTCAAAGCTTTAATGACTCATCTTCGTATCAACATCAATCTACT
TGACTACCTACAGAATGAGAAATTCTTCTAAATTTGAGCAAGTGAATTAA
TCC

Run BLAST on NCBI

protein sequence of TCONS_00049623-protein

>TCONS_00049623-protein ID=TCONS_00049623-protein|Name=TCONS_00049623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
MSSSIVHQVLRGGPPRAITRSDIVEPNRLQGFSDAVFATAATLLIVPVRK
FEMEQDETLKAALLRQWPQFTVFLLGYLVICTLWESHFVRYKVLAKVDDV
LVAMNLVSLMIVTFLPFSVDLEGHFAKYEISVLLNAGLLCELAMFIYGFS
NPVLLSARFQALEESEKRVKRHQIYIKVLLNCCLFLLAAIFSFASFVVAY
ILICSVLLTPFMKRIIIKLTELSAQCRFHDTVSTFEVLTGRIDKERLECF
TDAAVAIVATLLILDLTTEDFPTEQEVEREGLVEALKGLKEMFISYVGTY
VTVAIQWFIHHSVVHHLHIFTPILVVINRTFLAFVAFTPFLSTLNNKYTG
HVSSDAQTAVGFSSIILFMGSFTNVLMIIVALFKPDINLVDWARPRDNGN
TALIYLTIKALVIPVMAFLTFVISLSGLEASYLVYHVCMYATPVVLILLK
VGYACHWRHVGDVQHEEEQLTEEENMEGNGEEEEGTNEGVAVVI

Run BLAST on NCBI

transcript from alignment at scaffold_162:39808..47264-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049623 ID=TCONS_00049623|Name=TCONS_00049623|organism=Clytia hemisphaerica|type=transcript|length=7457bp|location=Sequence derived from alignment at scaffold_162:39808..47264- (Clytia hemisphaerica)
ATCCCACCACTGGTGGAACATCCCTTTTTTGGGCAATCTCTTTTTTTCCC
AGGCAAAACCCTAAGGGCGAAACTCATTTTTTAGACAATATCATGTATAC
CATTCGAAAGTTCTCAAAAAACTATTCATGATATTCATGACGTAATGTTT
TCTACGGAAATACCCCGGTTTTAGCCAGTAGTGGCAAATTTAAACTAGAC
AAAAGCTGTATAAAATTTGCCACTACTGGCAAAAACCAGGGTCTTTCCGT
AGAAAACATTACGTCATAAATATCAAGAATTAATATAGAAGACATTTAAA
CGGGTTTAGCCAATTTCATTACCTAACTCGAGATAATTCACGCAGAAGAT
GCAATTTATGGTCAATTTTAGACCAAAATGTGGGCGAAAAGTGGAACTTG
TTAATAATTGACTTCATTCACTTAGGTTTAACTGTTTTACAATTTTGATG
AGTTATATGCTTTTGTATTTAGGGATTGATTTAGAATACAAACTGGTATG
TCTTCCTCTATCGTTCATCAAGTATTAAGAGGAGGGCCGCCCAGGGCCAT
CACACGTTCAGACATCGTTGAGCCAAACCGTCTGCAAGGATTCAGTGATG
CTGTCTTCGCGACGGCTGCTACACTCCTCATTGTTCCTGTGAGGAAATTT
GAGATGGAACAAGATGAGACATTGAAAGCTGCTCTTCTTCGGCAATGGCC
TCAATTTACAGTATTTTTGTTGGGGTATTTGGTGATCTGCACTTTATGGG
AATCTCACTTCGTTCGCTACAAAGTCCTCGCAAAAGTGGATGACGTCTTG
GTAGCTATGAATCTCGTCTCTCTTATGATCGTCACTTTTCTTCCATTCAG
TGTCGATTTGGAAGGTCATTTTGCCAAATACGAAATATCCGTTCTTCTGA
ACGCTGGTTTGCTTTGTGAATTGGCGATGTTCATTTACGGGTTTTCAAAC
CCTGTGTTGTTGAGCGCTCGTTTTCAAGCGCTTGAGGAGAGCGAGAAACG
TGTCAAAAGACATCAAATCTACATCAAGGTTCTCTTGAACTGTTGCTTAT
TCTTACTGGCCGCCATCTTTAGTTTCGCTTCATTTGTGGTGGCGTATATT
TTGATTTGTTCTGTCCTGTTAACGCCCTTCATGAAACGTATCATTATCAA
ATTAACGGAACTGTCAGCACAATGCCGTTTTCATGACACCGTATCCACGT
TCGAGGTGCTCACAGGGAGAATCGACAAAGAACGGTTAGAATGTTTCACG
GACGCTGCGGTGGCAATAGTGGCCACACTTCTCATTCTTGACCTGACGAC
GGAGGATTTTCCGACGGAACAAGAAGTGGAGCGTGAAGGACTCGTAGAAG
CATTAAAAGGGTTAAAGGAGATGTTTATTTCATACGTGGGTACGTACGTC
ACTGTGGCTATCCAATGGTTCATACATCACTCAGTGGTTCACCACCTTCA
CATATTCACGCCCATCTTAGTAGTCATCAACCGAACCTTCCTCGCCTTTG
TCGCCTTCACGCCCTTCCTTTCCACCCTCAACAACAAATACACAGGTCAC
GTGAGCAGCGACGCTCAAACAGCCGTCGGCTTCTCCTCAATTATCCTTTT
CATGGGAAGTTTCACCAACGTTTTAATGATCATCGTTGCTCTATTCAAAC
CGGACATCAATTTAGTAGACTGGGCACGACCACGTGATAATGGCAACACA
GCCTTGATTTATTTAACCATCAAAGCTTTAGTTATTCCTGTCATGGCTTT
CTTGACTTTCGTCATCAGCCTGTCAGGGTTGGAAGCTTCTTACTTAGTGT
ATCACGTATGTATGTACGCCACGCCTGTCGTGTTGATTTTATTGAAGGTG
GGGTACGCTTGTCATTGGCGCCACGTTGGTGATGTGCAGCACGAAGAAGA
ACAATTGACTGAAGAAGAAAACATGGAGGGGAATGGTGAAGAGGAAGAAG
GGACGAATGAAGGTGTGGCTGTTGTGATTTGATGCGTGTCAACTTTTATA
TTTATATTTTTCTAGCACTGCGTTCATATATTGGCAGAGTTTTGATTTGT
TCGAGATTTTAAACGCGAATAAAACAGGATATCATTTTTATATACAAGCA
TCTCTCTGTTCATATAAGGAATGTAAATAAAAACTGAGACAAGCACTTTT
ACAAGCGGACCATAAAACAAGTCTTTTTGAAACGAATGAAATAAAATGAG
GTAAAGTTCTTCAAACAGAAATCTTCATTTGTTTGTTTCGCTGTTTGTTT
ACAAAAAAAGAAATTCTCAAAATGGGCGTTTCACATTATTAGTACCTACA
TGCACTTCTGTAAGATCTTTTTTTGTACATTTAAATTATTCTAGTTTTTA
ACTTTATAACGATTTTTCATATTTTACAAACGGTACAATATACATAGTTT
AGAAATGAAATCAAATTGTATGATATTCAGTTTTCTTGCTAAATTCAATA
TAAATTTATGAGGTACGTTTCTTTCGTTGGCTTTTTCATGTATGTTTCCT
TGTTTTGATGTTTTTTGAAACCGCATACTTGTCCAATGAGATCGTGAATC
TTTTTTAGTCTGTGAAACAATTTTTTTGATTTCAAGAACAATATTTGTGC
AGCCTGTCTTTTGTTTGACGAACGAAAAAATGATTTTGATCATATTTTCT
ATACCCTCTATTCTTTTCCGTCAGTTTGAAAGAAGCTGTGTGAAATGATG
GGTCATCTTAAAGAGTTGTGGACAGTTCTTAGCTTGGCTGCCATTTTGTT
TTCAGTGCGATCAATCACAACAATGAATTATAAAATTACAAAAGAATGGA
ACGACAAATCGGCCAATCATAATCCAGCATCTATTTCACTGTCATGGCAA
TCAGGGAATGATTACGTCACCGCTATCTTTGAGGCGCCATTTTTCGACGA
CCCTGCAGCGCCAAAGGGAGAAGTTGGGAGACCGTTCCCGAAACTCTGGG
ATTACGAAGGTGATTATTTACTTTAGCAATACGAAGGTTATCCGCTTTTA
ATGACAGATTTTTGGCGTAATAAAGTGCACTTTAAATTCTCTATTTTTGA
TGACGTGAAATCAGCAACTTTCAACAACTCATTCTTGGCTACTTAATTCG
TGAAATCAAAACTACGCGAATTCGCGAAAATTAATCTTGTTTAAGTGTGA
AATTCTGGTTTTATTATTTCTGTCTTTCTCTCACTCGAGATGGGAAAGTG
TGATTTGTGCTGAAACATCTTCTGAAAGATATTTCTGACTTTCTTTTTTT
CTTTTGTTCAGTGGTAGAGATTTTCTTCTTATCTTCAAAAAGTCAAGAAT
ATTTGGAAGTTGAAGTTTCACCGTAAGATTTTCCTTCTTTCATTTGAACC
CTAACTACACTGAGAATAAAGTTTCGGATGTTTAAGAAGATAAAACACTT
TGTGCTGATCAATACTGCTTCGTGCAATCTTATGCAAGATCACTCAAACT
TCTTCAGNCGTGCACCTGTCAAATCTTATGCAAGGTCACTCAAACTTCTT
CAGAGATTCTTAACCTGTGCAAAACAATTTTTCGCTCAAGCTAGGATGAT
CTTCTCTTGTTTAATTGAACACACCCCTGTCTCTGTTGTGGGCTGGGATA
CAACGAAGGAGTTGAATACCAATCTATCAAAACATATTTTGCTTGGGTGG
AAACTTTCAATTTAGCTCATAAACCTCATTCAAATATTATGTTTCTTTTA
CAGACATGGTCAGCATCTTTTGTTGCTCCTCAAAGGCGTCCGCAACATGA
TCGAGGTTGGTGGCAATTTGTTCGCATTTCTTTCTATGTAGTAGAAGAGA
CATACGAGACTCCCTTGGATGAAACCTTGATTTCTGAACACGACCTGTTT
GTTTACTGTTAATTTGATGCAATCGATTTGATTGTGATTATTCCGGTCTT
TTCTCTATTAAACTCTAACAGTTTTCTGTTACATTGTTGGCGAGAGAGCC
AGATTGTACCTACACCCTTCTCAAAATGTTATAATGTTTTCATCTCTGAA
TAGTCTTTTATCTCTTGAGAGAATCGCCAAAAGTCGCTACACGTAAAATA
ATTCTCGAGTAACCCGTGACACGCTTTTTTTATAAGAATAGTGTACTTTG
AATGAGGATCAAGTATTCTTAAGAAATTGTTAAAATTGAGGGTGAAATAT
TCTTAACGTATTCTTACTTTTTTAGACTTGACTTTTTTACAAACATGAGA
ACTGATCAATTTGAGAGTTTTGGACTTTTGAGTGAACCTTTGGAACTAAG
ATTAAATTTCTGCCTCAAAGTTTAAATTCAAGTCTAACAAAGGAAGCAGT
TTTTTTCTGTTGACCAAATACAAAATGTATTCTTATCAAATTCTGTGAAA
CTCACCCTAGAGGGTATTCTTAGGGTATTCTTACAATTTGGCCAATTTTC
ACCCTGATATTCTTATAGAAGATATTCTTATTTTAAAAAAGCGTGTACCT
AAGCCTGGTACTTAAGCCATGCTTAAAGTTGTAAATATTGGATTCACCAA
ATGGATTTTTTGTGGCCAGGTTTCTGGGCTTATTGAAGTCAAAAGAACTA
CCATGATATTTAAATCTTCTTCTCTTAACAGGACGAACTTCCAATGAACT
ACACAGCTTCCATCGACCTTAACAACAAAACGTGGAAAGGTCACGCGCAC
ATCCCGCTCGCATATTTCCCGCGAAGTGTGGACCGAATGAATGCGTACGC
CATCCACGGTTCGAATGAAAAGCGTGTATACGAAGCGCTCTATCCAACGC
CAGAAGGGAAATTCCCTCAACCTGATTTGTAAGTATTTTTACCTTTGAAA
CTACACCCTTGTTGCGTTTCATCCCATACTCTCACAACACCCCTGTCTCG
TGTTAATGACTACCATGTTACTTCGAATAAACGCCTCTCCTAAAATCCGA
AAAATTAATAAACGCCCGGGGTGCTTATTCGAAGTAATACAGTACTTTAA
TCGTAGAAATTTTAGCGAGACTAATTTTAGCGTTTTAGCGAGTTTTCCCT
ATTTTCGCTAAAATATAAATCTCGCTAAAACGCGCCGAATTGACAGATGG
TTAAAATTTATCCGCAAGAAATTTTTCGAAAAGCTGATTCGCTAAAATAA
ATCCAGTATGTTTTTTCTTTCATTTTTTGGACCTACCCCGGTGGGGTGGA
GGTCCTATAAATTCACCTCTGTCCGTCCGTCCGTCCGTCCGTCCGTCCGT
TCGTTACCAGCTTTTCTCGAGATTGAATCATAGGAATCATTTGATTTTTG
GTACAAAGGTGCAAAACGGTAGTGGCCAAAATGTGACGAAGCCCGATTTT
CGAAAAAAAATTTTTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAAC
GGGTTTTTTGGACTTTGTGAAAAAATTGGATCATTAATTTTTTCTGATTT
TTTGCATGAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCAT
ACATCAATGTTCTTAGTCAAATTACTCAATTTCTTCATGAGATAGATGTT
TTTTTTGCTCATGAGGGCTTACTTTTGAAGAATATGTGTGATTAGACATG
AAATTTTGGTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAGTTCAAA
TTTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAG
ATTGGCTCTTTCATTCTTTAAGACTTTTTGCACAAAGATGCATAACTATA
AACCCTCGAATGTGACGGAGCCCAATTTTCGAAAAAAAATATGTTTTTGG
GCAAATTGGGGCCAAAAAACGGCTAAAAAGCGGGTTTTTTGGACTTTGTG
AAAAATTGGATCATTGATTTTTTCTGATTTTTTGCATGGAAGTAGGGTAC
CATCATAGGTAAAAGATGGCTCAGGGAGATTTTTGCAAAAAAAATTTGTT
GGCTCAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATAC
ATTAACGTTCTTAGTCAAATTACTCAATTTTTTATGAGATAGATGTTTTT
TTTGCTCACGGGGGCTTACTTTTGAAGCATATATGTGTTTAGACATGAAA
TTTTGGTTGCTTGGCGTGTTTTTACAGAAAAACTGGCCAAATTCTATATT
TTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATT
GGCTCTTTCATTCTTTATGATTTTTTGCACAAAGATGCATAACTATAAAC
CCTCGAATGTGACTGAGCCCGATTTTCGAAAAAAAATGTTTTTGGGCAAA
TTTGGGACAAAAAACGGCTAAAAAAAGGGTTTTTTGGACAATGTGAAATA
TTGGATCGTTTTTTTTTTTGATTTTTTGCATGATAGTAGGTAAAAGATGG
GTTTAGCAGATTTTTGTAAAAAAACTTTTCAGCTCAAAAAACGCATCTTT
ATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCCAAAT
TACTCAATTTTTTGATGAGATAGATGTCTTTTTATGCTCACAAAGTCTTG
AATATGAAAGAATATTTCAAGAGCATGAAATTTCGGTTTCTAAACTTTTT
TTTTATAAGAAACAAACGACTAATTTTAATAAATCGTCACTATTTGTGTT
CTGAATGATTGTTTAACGTTCATGCTCACGTAGATATCAATTATATATGT
GTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTATCATTT
TGTTATCATTTTCATAATTTTTTCAAAAACTACCTAGTAATGGGGGCGTA
AATTTCCAAGTTTTTCTGTTCTTAGTCAAGAATTGTGTTACAAAGACTAT
ATTGATTTTTGAATTAAAAAACATTATTTTTTTCTTCGAAATCATTGCCC
TCGCTAAAATTAATCCACGCGAAATTTTTGTCAGACGAGTATTCGCTAAA
ATTTATCCACGCGAAATTTTTTGAAATCGTGATTCGCTAAAATAAATCCA
AAAAAATCAAGATTTTCCTGATTCGCTAATATACGCTAAAATTAATCTCG
CTAAAATTTCTACGATTAAAGTAGTTGATAGGTAGGATACTCAAAATTTC
AAATTTGAACATGAAACCAAGAGTGGTAGTCAACATTAATTTTTTAGCTA
ATAACTTTGTTTTGGCGTTACATTTTACCTATATATAGTGATTTGAGTCA
TGAAGAACAGTCAGTAATCCTGACTCCTTTTCTTATTTATCACTTTCAGC
CATCGATTGGAATATTTCGAAGATTTCGATTTATGGAAGATCGTTACTGA
TAGCTCGGTTACTATTGGTAACTACTGGAACCAATTCCCAAAGACGTGAA
AAAAGTTTTTTTTGTACTTCATTATTTTCATATTTGAAAATATATCAGCA
CGCATGCTCGTTCAAAGCTTTAATGACTCATCTTCGTATCAACATCAATC
TACTTGACTACCTACAGAATGAGAAATTCTTCTAAATTTGAGCAAGTGAA
TTAATCC

Coding sequence (CDS) from alignment at scaffold_162:39808..47264-

>TCONS_00049623 ID=TCONS_00049623|Name=TCONS_00049623|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_162:39808..47264- (Clytia hemisphaerica)
ATGTCTTCCTCTATCGTTCATCAAGTATTAAGAGGAGGGCCGCCCAGGGC
CATCACACGTTCAGACATCGTTGAGCCAAACCGTCTGCAAGGATTCAGTG
ATGCTGTCTTCGCGACGGCTGCTACACTCCTCATTGTTCCTGTGAGGAAA
TTTGAGATGGAACAAGATGAGACATTGAAAGCTGCTCTTCTTCGGCAATG
GCCTCAATTTACAGTATTTTTGTTGGGGTATTTGGTGATCTGCACTTTAT
GGGAATCTCACTTCGTTCGCTACAAAGTCCTCGCAAAAGTGGATGACGTC
TTGGTAGCTATGAATCTCGTCTCTCTTATGATCGTCACTTTTCTTCCATT
CAGTGTCGATTTGGAAGGTCATTTTGCCAAATACGAAATATCCGTTCTTC
TGAACGCTGGTTTGCTTTGTGAATTGGCGATGTTCATTTACGGGTTTTCA
AACCCTGTGTTGTTGAGCGCTCGTTTTCAAGCGCTTGAGGAGAGCGAGAA
ACGTGTCAAAAGACATCAAATCTACATCAAGGTTCTCTTGAACTGTTGCT
TATTCTTACTGGCCGCCATCTTTAGTTTCGCTTCATTTGTGGTGGCGTAT
ATTTTGATTTGTTCTGTCCTGTTAACGCCCTTCATGAAACGTATCATTAT
CAAATTAACGGAACTGTCAGCACAATGCCGTTTTCATGACACCGTATCCA
CGTTCGAGGTGCTCACAGGGAGAATCGACAAAGAACGGTTAGAATGTTTC
ACGGACGCTGCGGTGGCAATAGTGGCCACACTTCTCATTCTTGACCTGAC
GACGGAGGATTTTCCGACGGAACAAGAAGTGGAGCGTGAAGGACTCGTAG
AAGCATTAAAAGGGTTAAAGGAGATGTTTATTTCATACGTGGGTACGTAC
GTCACTGTGGCTATCCAATGGTTCATACATCACTCAGTGGTTCACCACCT
TCACATATTCACGCCCATCTTAGTAGTCATCAACCGAACCTTCCTCGCCT
TTGTCGCCTTCACGCCCTTCCTTTCCACCCTCAACAACAAATACACAGGT
CACGTGAGCAGCGACGCTCAAACAGCCGTCGGCTTCTCCTCAATTATCCT
TTTCATGGGAAGTTTCACCAACGTTTTAATGATCATCGTTGCTCTATTCA
AACCGGACATCAATTTAGTAGACTGGGCACGACCACGTGATAATGGCAAC
ACAGCCTTGATTTATTTAACCATCAAAGCTTTAGTTATTCCTGTCATGGC
TTTCTTGACTTTCGTCATCAGCCTGTCAGGGTTGGAAGCTTCTTACTTAG
TGTATCACGTATGTATGTACGCCACGCCTGTCGTGTTGATTTTATTGAAG
GTGGGGTACGCTTGTCATTGGCGCCACGTTGGTGATGTGCAGCACGAAGA
AGAACAATTGACTGAAGAAGAAAACATGGAGGGGAATGGTGAAGAGGAAG
AAGGGACGAATGAAGGTGTGGCTGTTGTGATTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031462	XLOC_031462	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00049623-protein	TCONS_00049623-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_162	supercontig	scaffold_162:39808..47264 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.3811	9.47255	4.75175	3.70476	3.89549	3.82332	5.61304	4.82426	5.87644	5.53019	4.98183	3.80722	6.29765	5.23808	6.84638	6.85277	6.09899	5.85457	4.73667	4.65798	4.24133	4.69706	10.5448	11.7908	13.3063	10.8085	4.61041	3.65456	9.44777	7.90525

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR010617	TMEM175

Vocabulary: **Molecular Function**
Term	Definition
GO:0005267	potassium channel activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005267	potassium channel activity

Blast

[Close]

BLAST of TCONS_00049623 vs. Swiss-Prot (Human)
Match: CD033 (UPF0462 protein C4orf33 OS=Homo sapiens GN=C4orf33 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.036e-49
Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 1

Query: 2299 MNYKITKEWNDKSANHNPASISLSWQSGNDYVTAIFEAPFFDDPAAPKGEVGRPFPKLWDYEVVEIFFLSSKSQEYLEVEVSPHGQHLLLLLKGVRNMIEDELPMNYTASIDLNNKTWKGHAHIPLAYFPRSVDRMNAYAIHGSNEKRVYEALYPTPEGKFPQ---PDFHRLEYFEDFDLWKIVTDSSVTIGNYWNQ 2880
            M++KI   W+     H P  I L+   G+  V     APFF DP AP GE G+PF +LWDYEVVE FFL+  +++YLEVE+ PHGQHL+LLL G RN+ + ELP+++  S       W+G A++P +YFP +V + N++AIHGS +KR YEALYP P+ +  Q   PDFH LEYF+ F+        +  +G  W Q
Sbjct:    1 MDFKIEHTWDGFPVKHEPVFIRLN--PGDRGVMMDISAPFFRDPPAPLGEPGKPFNELWDYEVVEAFFLNDITEQYLEVELCPHGQHLVLLLSGRRNVWKQELPLSFRMS--RGETKWEGKAYLPWSYFPPNVTKFNSFAIHGSKDKRSYEALYPVPQHELQQGQKPDFHCLEYFKSFNF-------NTLLGEEWKQ 186

The following BLAST results are available for this feature:

BLAST of TCONS_00049623 vs. Swiss-Prot (Human)

BLAST of TCONS_00049623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CD033	3.036e-49	46.19	UPF0462 protein C4orf33 OS=Homo sapiens GN=C4orf33...	[more]

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TCONS_00049623 (transcript) - C. hemisphaerica