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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049619 ID=TCONS_00049619|Name=TCONS_00049619|organism=Clytia hemisphaerica|type=transcript|length=2095bpRun BLAST on NCBI protein sequence of TCONS_00049619-protein >TCONS_00049619-protein ID=TCONS_00049619-protein|Name=TCONS_00049619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp MEEEGGGYTDSDRSEYNRDRRGDRRDRGGKRRDRRPRDRFRRERDRQDSERun BLAST on NCBI transcript from alignment at scaffold_162:50981..71783+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049619 ID=TCONS_00049619|Name=TCONS_00049619|organism=Clytia hemisphaerica|type=transcript|length=20803bp|location=Sequence derived from alignment at scaffold_162:50981..71783+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_162:50981..71783+ >TCONS_00049619 ID=TCONS_00049619|Name=TCONS_00049619|organism=Clytia hemisphaerica|type=CDS|length=21252bp|location=Sequence derived from alignment at scaffold_162:50981..71783+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049619 vs. Swiss-Prot (Human)
Match: SMG9 (Protein SMG9 OS=Homo sapiens GN=SMG9 PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 3.251e-68 Identity = 135/362 (37.29%), Postives = 216/362 (59.67%), Query Frame = 3
Query: 612 GLAALRLPSEVLPKESINVIDGSFQWSDKAFESLLDQTDYVVVGCVGMQGAGKSTLMSLIAGQKVQSIEKTRLIFCPQKKSDWEKCIHRTVGVDVYITRERMILLDTQPLMSPSMLEQYLKYDRKVPSEYSTAEICLEVQALQLISFLYTVCHSILVVQDHMMDLNLINLLKSSEMLKPSTISHNSAQDGXXXXXXXXXXEFYPHLVFVYTSCDTRSFEYDVIKSTCQVTWKLFENSRLHVRGGPSMLRAPLLSLHEAPTLMEGLDDVNLYFIPSLLSSKDEED-----------YENQLTYQGFPSSQTIISLLRQQLSALPRTPFTHHVLSEKNWFHYAARTWEAVKKSNLIAEYHRLLT 1664
G A L LP E + K SI ++D W D A E LLDQTD +VVG +G+QG GKS +MSL++ + ++T +F Q E+ ++T G+D +IT+ER++ LDTQP++SPS+L+ + DRK+P EY+ +E+Q+LQ+ +FL+TVCH ++VVQD DL+L L+++EM+K + + + + S+++ D E+YPHLVF+ F ++ + +L +S L +G SML+ + P ++ +VNL+ +P + S + E+ + Y+G PS Q+++S LR Q+ ++ R +H +L+EKNWFHYAAR W+ V+KS+ +AEY RLL
Sbjct: 167 GQAKL-LPPERM-KHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRT-YVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVK--PSTPSPSHESSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFP-GLPPDFLD--SEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWFHYAARIWDGVRKSSALAEYSRLLA 520 The following BLAST results are available for this feature:
BLAST of TCONS_00049619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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