TCONS_00049618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049618
Unique NameTCONS_00049618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049618 ID=TCONS_00049618|Name=TCONS_00049618|organism=Clytia hemisphaerica|type=transcript|length=2111bp
GCACACTGGTTATATTCTAACTtctactttaaatttttactttcatttAT
ACTCAACTAAACTATAGttactttcttttattttcaggtctgaataatga
aaaaataaaatagataaaaaaagaatttaaataaagaaagaaatgaattt
CATTCGAAGAGTTGTGAATAATTATCAAAGGGCTGGCCCACATCTTAAAA
GATACTTATCTTCAGAACATACACAGGGAGAGAAAAGTTACACCTGGCTT
CTAGTCTTTCCTGTTGCAACTTTTGGCCTTGGAACATGGCAGGTGCGTCG
TTTGGAATGGAAGAAAGGATTGATCAATGATATGAAAGAAAGGACACATT
CTCCGCCCTCACCGTACGAAACTAGAGATATGTTGATACCGGGGCGTACC
GCCCAAATGGAATATAAGCCAGTTTATGTTGAAGGCGTTTTTGATCATAG
TAAAGAGATTTTGCTAGGACCTCGAACCAGAAATGATAAAACCAATAGAG
ATCCAACTGGCTTAATAGCTCATGGTAAGGCGGAGGTTGGGTACCATATT
GTAACACCCTTTGTATTGGATAATGGTGAAAGAATACTTATCAACCGTGG
TTGGGTTGATAGTAAAAGCAAGGACCAGAAAACAAGACCAGAAGGACAAA
TTACAGACCATGTTCGCATATCTGGTTTAGTACGCAAAGGTGAGGGTAGA
CCTCAATTTAGTCCTGCTGTCAAAGAAGGTAGTTTGAATTGGAATTATTG
TGATGTTTATGGTTTTTCGAATATCTTGAATACATTACCTTTGATTATTG
ATGCAGATGATAAGAGTACCGTTCCTGGTGGACCAATAGGAGGTCAAACT
CGTGTCACATTACGTAATGAACATTTAAATTACGTCATCACTTGGTATGC
TCTCTCAGCAGCTACTTTGTTAATGTGGTTCCAATTGCGCAAACGACCAT
CTGCCATGTTCAAAGGTCCAAAGACCAAGGAAATTTGAGATTTATGGTTA
TTTATTATTGATGGTTATGTGTTTGGTTAGCTTGTATGGTTGTTAtagtg
atttgaaatttttggaatcTTACCCAAATTGATTCAAAATGGAACTCACT
TTTGCAATAACTCGAAAAacaaactaaagtctgtccagatataattggca
gtggaaacaagaatgcctgtaacttttgacagtcaaatataattatggaa
attcttTTTGNGTCACTATTGGTATTGCAATAACTCGAAAAACAAATTAA
ACTAAAACTAAGGACAGCAAAAATTGTGTGGCATGATAGGCATGTGTCAA
AACTGTTCTTCTTGCTTTGATAACAATTTACTTGGTATGGTAGTCTGGTA
GTCATTATCAGAAATTGATAAAGATTAATTTTATCTAACCGTCAATTTCA
ATATTCTTCATTCAAACTTTGAAGTCATGCTATATAATGGTGTTATATAT
TACAAACACTCTTTCATTTGGccgaaatttttcatttttaatttaatttt
atgagtatttttcttttctttttgttgcTTTTATTAATACAATGTAGATT
ATAAGAAAGTGTCTGTTTCATTCAAAGAAGATGCCAGTCTATCGCCTATC
GAGGCTCGCTTTTTGGTCAGCAACAAAACAATTGATTTGTGCTACTGTTT
TTCCAGCCCTTTTTAATACAATATTTCCTCCGTTTTTAAATCTATCATCC
TTTTCCCAAATCAACACCAAGATTCAGAAGAATTTCCCCTTTTGCGGTCG
GCGTTCCCTTTTCATGACGATCTCTCTCCCCCCCCTATTCTCTTTTCGAA
ATCAATTTCCAAGCCTTGTTTCAGATAATAATTTAACTATGTGAGCAAAG
TGCAATGCTCTTTTTAGGGTAATCCTCAAATTTTGTTATACACTATTCTT
GAGATTTCATTATATGTAGTTCTAAACCGTATATACGAGGTCATCAGTTG
AAGATGATATGTCAGTCAATGAGGTTTTCGGCCCAGTCCTGTCTGGACTT
CTTCTTCATATCATGATGGTCTCTTCCCCTTTCCTAATCAACTCCCCTTT
TTCCAATCTGCCCCTCCTCACCTTTTAAAGCAACTACACCCATTTTAGAT
CAATCACTCCT
Run BLAST on NCBI

protein sequence of TCONS_00049618-protein

>TCONS_00049618-protein ID=TCONS_00049618-protein|Name=TCONS_00049618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MNFIRRVVNNYQRAGPHLKRYLSSEHTQGEKSYTWLLVFPVATFGLGTWQ
VRRLEWKKGLINDMKERTHSPPSPYETRDMLIPGRTAQMEYKPVYVEGVF
DHSKEILLGPRTRNDKTNRDPTGLIAHGKAEVGYHIVTPFVLDNGERILI
NRGWVDSKSKDQKTRPEGQITDHVRISGLVRKGEGRPQFSPAVKEGSLNW
NYCDVYGFSNILNTLPLIIDADDKSTVPGGPIGGQTRVTLRNEHLNYVIT
WYALSAATLLMWFQLRKRPSAMFKGPKTKEI
Run BLAST on NCBI

transcript from alignment at scaffold_161:206166..208276

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049618 ID=TCONS_00049618|Name=TCONS_00049618|organism=Clytia hemisphaerica|type=transcript|length=2111bp|location=Sequence derived from alignment at scaffold_161:206166..208276 (Clytia hemisphaerica)
AGGAGTGATTGATCTAAAATGGGTGTAGTTGCTTTAAAAGGTGAGGAGGG
GCAGATTGGAAAAAGGGGAGTTGATTAGGAAAGGGGAAGAGACCATCATG
ATATGAAGAAGAAGTCCAGACAGGACTGGGCCGAAAACCTCATTGACTGA
CATATCATCTTCAACTGATGACCTCGTATATACGGTTTAGAACTACATAT
AATGAAATCTCAAGAATAGTGTATAACAAAATTTGAGGATTACCCTAAAA
AGAGCATTGCACTTTGCTCACATAGTTAAATTATTATCTGAAACAAGGCT
TGGAAATTGATTTCGAAAAGAGAATAGGGGGGGGAGAGAGATCGTCATGA
AAAGGGAACGCCGACCGCAAAAGGGGAAATTCTTCTGAATCTTGGTGTTG
ATTTGGGAAAAGGATGATAGATTTAAAAACGGAGGAAATATTGTATTAAA
AAGGGCTGGAAAAACAGTAGCACAAATCAATTGTTTTGTTGCTGACCAAA
AAGCGAGCCTCGATAGGCGATAGACTGGCATCTTCTTTGAATGAAACAGA
CACTTTCTTATAATCTACATTGTATTAATAAAAgcaacaaaaagaaaaga
aaaatactcataaaattaaattaaaaatgaaaaatttcggCCAAATGAAA
GAGTGTTTGTAATATATAACACCATTATATAGCATGACTTCAAAGTTTGA
ATGAAGAATATTGAAATTGACGGTTAGATAAAATTAATCTTTATCAATTT
CTGATAATGACTACCAGACTACCATACCAAGTAAATTGTTATCAAAGCAA
GAAGAACAGTTTTGACACATGCCTATCATGCCACACAATTTTTGCTGTCC
TTAGTTTTAGTTTAATTTGTTTTTCGAGTTATTGCAATACCAATAGTGAC
NCAAAaagaatttccataattatatttgactgtcaaaagttacaggcatt
cttgtttccactgccaattatatctggacagactttagtttgtTTTTCGA
GTTATTGCAAAAGTGAGTTCCATTTTGAATCAATTTGGGTAAgattccaa
aaatttcaaatcactaTAACAACCATACAAGCTAACCAAACACATAACCA
TCAATAATAAATAACCATAAATCTCAAATTTCCTTGGTCTTTGGACCTTT
GAACATGGCAGATGGTCGTTTGCGCAATTGGAACCACATTAACAAAGTAG
CTGCTGAGAGAGCATACCAAGTGATGACGTAATTTAAATGTTCATTACGT
AATGTGACACGAGTTTGACCTCCTATTGGTCCACCAGGAACGGTACTCTT
ATCATCTGCATCAATAATCAAAGGTAATGTATTCAAGATATTCGAAAAAC
CATAAACATCACAATAATTCCAATTCAAACTACCTTCTTTGACAGCAGGA
CTAAATTGAGGTCTACCCTCACCTTTGCGTACTAAACCAGATATGCGAAC
ATGGTCTGTAATTTGTCCTTCTGGTCTTGTTTTCTGGTCCTTGCTTTTAC
TATCAACCCAACCACGGTTGATAAGTATTCTTTCACCATTATCCAATACA
AAGGGTGTTACAATATGGTACCCAACCTCCGCCTTACCATGAGCTATTAA
GCCAGTTGGATCTCTATTGGTTTTATCATTTCTGGTTCGAGGTCCTAGCA
AAATCTCTTTACTATGATCAAAAACGCCTTCAACATAAACTGGCTTATAT
TCCATTTGGGCGGTACGCCCCGGTATCAACATATCTCTAGTTTCGTACGG
TGAGGGCGGAGAATGTGTCCTTTCTTTCATATCATTGATCAATCCTTTCT
TCCATTCCAAACGACGCACCTGCCATGTTCCAAGGCCAAAAGTTGCAACA
GGAAAGACTAGAAGCCAGGTGTAACTTTTCTCTCCCTGTGTATGTTCTGA
AGATAAGTATCTTTTAAGATGTGGGCCAGCCCTTTGATAATTATTCACAA
CTCTTCGAATGaaattcatttctttctttatttaaattctttttttatct
attttattttttcattattcagacctgaaaataaaagaaagtaaCTATAG
TTTAGTTGAGTATaaatgaaagtaaaaatttaaagtagaAGTTAGAATAT
AACCAGTGTGC

Coding sequence (CDS) from alignment at scaffold_161:206166..208276

>TCONS_00049618 ID=TCONS_00049618|Name=TCONS_00049618|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_161:206166..208276 (Clytia hemisphaerica)
TCAAATTTCCTTGGTCTTTGGACCTTTGAACATGGCAGATGGTCGTTTGC
GCAATTGGAACCACATTAACAAAGTAGCTGCTGAGAGAGCATACCAAGTG
ATGACGTAATTTAAATGTTCATTACGTAATGTGACACGAGTTTGACCTCC
TATTGGTCCACCAGGAACGGTACTCTTATCATCTGCATCAATAATCAAAG
GTAATGTATTCAAGATATTCGAAAAACCATAAACATCACAATAATTCCAA
TTCAAACTACCTTCTTTGACAGCAGGACTAAATTGAGGTCTACCCTCACC
TTTGCGTACTAAACCAGATATGCGAACATGGTCTGTAATTTGTCCTTCTG
GTCTTGTTTTCTGGTCCTTGCTTTTACTATCAACCCAACCACGGTTGATA
AGTATTCTTTCACCATTATCCAATACAAAGGGTGTTACAATATGGTACCC
AACCTCCGCCTTACCATGAGCTATTAAGCCAGTTGGATCTCTATTGGTTT
TATCATTTCTGGTTCGAGGTCCTAGCAAAATCTCTTTACTATGATCAAAA
ACGCCTTCAACATAAACTGGCTTATATTCCATTTGGGCGGTACGCCCCGG
TATCAACATATCTCTAGTTTCGTACGGTGAGGGCGGAGAATGTGTCCTTT
CTTTCATATCATTGATCAATCCTTTCTTCCATTCCAAACGACGCACCTGC
CATGTTCCAAGGCCAAAAGTTGCAACAGGAAAGACTAGAAGCCAGGTGTA
ACTTTTCTCTCCCTGTGTATGTTCTGAAGATAAGTATCTTTTAAGATGTG
GGCCAGCCCTTTGATAATTATTCACAACTCTTCGAATGaaattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031460XLOC_031460Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049618-proteinTCONS_00049618-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049618-exon-scaffold_161-1491911889:206166..208276TCONS_00049618-exon-scaffold_161-1491911889:206166..208276Clytia hemisphaericaexon
TCONS_00049618-exon-scaffold_161-1510915933:206166..208276TCONS_00049618-exon-scaffold_161-1510915933:206166..208276Clytia hemisphaericaexon
TCONS_00049618-exon-scaffold_161-1575043694:206166..208276TCONS_00049618-exon-scaffold_161-1575043694:206166..208276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:206166..208276 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
84.5087	81.2198	77.4675	84.2129	21.1012	15.8666	18.4387	19.7772	16.7833	16.7882	14.3803	12.391	8.57822	8.47418	10.524	12.9257	21.6625	19.7789	7.59826	7.76931	23.4042	21.3342	52.7181	44.5677	13.5935	16.4783	14.0607	11.0975	25.0211	26.0162
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002994Surf1/Shy1
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00049618 vs. Swiss-Prot (Human)
Match: SURF1 (Surfeit locus protein 1 OS=Homo sapiens GN=SURF1 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.428e-58
Identity = 107/244 (43.85%), Postives = 144/244 (59.02%), Query Frame = 2 
Query:  209 SSEHTQGEKSYTW-LLVFPVATFGLGTWQVRRLEWKKGLINDMKERTHSPPSPYETRDMLIPGRTAQMEYKPVYVEGVFDHSKEILLGPRTRNDKTNRDPTGLIAHGKAEVGYHIVTPF-VLDNGERILINRGWVDSKSKDQKTRPEGQITDHVRISGLVRKGEGRPQFSPAVKEGSLNWNYCDVYGFSNILNTLPLIIDADDKSTVPGGPIGGQTRVTLRNEHLNYVITWYALSAATLLMWFQ 934
            S+   + +    W LL+ PV  FGLGTWQV+R +WK  LI +++ R  + P P     M +      +EY+PV V G FDHSKE+ + PRT  D       G +     + G ++VTPF   D G  IL+NRG+V  K  + +TR +GQI   V + G+VR  E R  F P       +W+Y D+   + I    P+ IDA+ +STVPGGPIGGQTRVTLRNEHL Y++TWY LSAAT  +WF+
Sbjct:   52 SATKAEDDSFLQWVLLLIPVTAFGLGTWQVQRRKWKLNLIAELESRVLAEPVPLPADPMEL----KNLEYRPVKVRGCFDHSKELYMMPRTMVDPVREAREGGLISSSTQSGAYVVTPFHCTDLGVTILVNRGFVPRKKVNPETRQKGQIEGEVDLIGMVRLTETRQPFVPENNPERNHWHYRDLEAMARITGAEPIFIDANFQSTVPGGPIGGQTRVTLRNEHLQYIVTWYGLSAATSYLWFK 291
The following BLAST results are available for this feature:
BLAST of TCONS_00049618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SURF15.428e-5843.85Surfeit locus protein 1 OS=Homo sapiens GN=SURF1 P... [more]
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