TCONS_00049617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049617
Unique NameTCONS_00049617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049617 ID=TCONS_00049617|Name=TCONS_00049617|organism=Clytia hemisphaerica|type=transcript|length=789bp
cgcgaaaatatataccaataaggtattctCATAACTTCccacttttttcc
caaattcccCCAAAAACGTACCCTACTAGGGAGGAGGTGAAAAAaagtac
cctgaccagcggcacatccccgtaCACCCCGTCTTGCCCAAGGGTTTGTC
CTATCAAATACCATCACTCTTTAACTTCAAATCAGGTGCAATCAAAATGG
CGAAGAACAGACTGTAACTGCATTTAAATTAAACAaagtctttttttcat
tttttcatcattGACTTTTCTCCCTGTTCCTTTTGTGCTCACTTATCGAG
CCTACCAGTGCTCGCCTACTCGTCGTTGCTGCCTTGATGACCCATGTCAA
AAGTACTGTTGCGAAAGACATCGAGACTAATTTGACTTCATCTGTCGACT
GTTTGAGTACAGATCGTGTCGACTTGAGTGGCTCCTTTGACGCCATAATC
GGCGACGTGGGGACGTCTTTAATCTCCTTTTCGACAACTTGGACGATCGG
GTTCCGTTCCGCAGACGTGACGCCGATTAAATAATACGTCAACGATAAAA
ATCCTTTTATGATACCCCTAGCCGTGTATAGAACCAGATTTTGGAACGTA
GCGTTTGTGACAAGAACGTACAACGTAGTCAGAGCATCACGTAAGATGAA
TAATATACATTTCGTAAGTAGACGTAACGCGTACACAGCCGTAGGTCCTG
CCATTGTTTTTAGGGTGTTGCCACTAAGCGCTAAGATCGCCATAAGAATT
TTTTGTGGTAATTCAACAAGCAAATCAAGCGAGCAAGTA
Run BLAST on NCBI

protein sequence of TCONS_00049617-protein

>TCONS_00049617-protein ID=TCONS_00049617-protein|Name=TCONS_00049617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
TCSLDLLVELPQKILMAILALSGNTLKTMAGPTAVYALRLLTKCILFILR
DALTTLYVLVTNATFQNLVLYTARGIIKGFLSLTYYLIGVTSAERNPIVQ
VVEKEIKDVPTSPIMASKEPLKSTRSVLKQSTDEVKLVSMSFATVLLTWV
IKAATTSRRALVGSISEHKRNREKSQ
Run BLAST on NCBI

transcript from alignment at scaffold_161:161017..161805

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049617 ID=TCONS_00049617|Name=TCONS_00049617|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at scaffold_161:161017..161805 (Clytia hemisphaerica)
TACTTGCTCGCTTGATTTGCTTGTTGAATTACCACAAAAAATTCTTATGG
CGATCTTAGCGCTTAGTGGCAACACCCTAAAAACAATGGCAGGACCTACG
GCTGTGTACGCGTTACGTCTACTTACGAAATGTATATTATTCATCTTACG
TGATGCTCTGACTACGTTGTACGTTCTTGTCACAAACGCTACGTTCCAAA
ATCTGGTTCTATACACGGCTAGGGGTATCATAAAAGGATTTTTATCGTTG
ACGTATTATTTAATCGGCGTCACGTCTGCGGAACGGAACCCGATCGTCCA
AGTTGTCGAAAAGGAGATTAAAGACGTCCCCACGTCGCCGATTATGGCGT
CAAAGGAGCCACTCAAGTCGACACGATCTGTACTCAAACAGTCGACAGAT
GAAGTCAAATTAGTCTCGATGTCTTTCGCAACAGTACTTTTGACATGGGT
CATCAAGGCAGCAACGACGAGTAGGCGAGCACTGGTAGGCTCGATAAGTG
AGCACAAAAGGAACAGGGAGAAAAGTCaatgatgaaaaaatgaaaaaaag
acttTGTTTAATTTAAATGCAGTTACAGTCTGTTCTTCGCCATTTTGATT
GCACCTGATTTGAAGTTAAAGAGTGATGGTATTTGATAGGACAAACCCTT
GGGCAAGACGGGGTGtacggggatgtgccgctggtcagggtacttTTTTT
CACCTCCTCCCTAGTAGGGTACGTTTTTGGgggaatttgggaaaaaagtg
gGAAGTTATGagaataccttattggtatatattttcgcg

Coding sequence (CDS) from alignment at scaffold_161:161017..161805

>TCONS_00049617 ID=TCONS_00049617|Name=TCONS_00049617|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_161:161017..161805 (Clytia hemisphaerica)
ACTTGCTCGCTTGATTTGCTTGTTGAATTACCACAAAAAATTCTTATGGC
GATCTTAGCGCTTAGTGGCAACACCCTAAAAACAATGGCAGGACCTACGG
CTGTGTACGCGTTACGTCTACTTACGAAATGTATATTATTCATCTTACGT
GATGCTCTGACTACGTTGTACGTTCTTGTCACAAACGCTACGTTCCAAAA
TCTGGTTCTATACACGGCTAGGGGTATCATAAAAGGATTTTTATCGTTGA
CGTATTATTTAATCGGCGTCACGTCTGCGGAACGGAACCCGATCGTCCAA
GTTGTCGAAAAGGAGATTAAAGACGTCCCCACGTCGCCGATTATGGCGTC
AAAGGAGCCACTCAAGTCGACACGATCTGTACTCAAACAGTCGACAGATG
AAGTCAAATTAGTCTCGATGTCTTTCGCAACAGTACTTTTGACATGGGTC
ATCAAGGCAGCAACGACGAGTAGGCGAGCACTGGTAGGCTCGATAAGTGA
GCACAAAAGGAACAGGGAGAAAAGTCaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031459XLOC_031459Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049617-proteinTCONS_00049617-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049617-exon-scaffold_161-1491911889:161017..161805TCONS_00049617-exon-scaffold_161-1491911889:161017..161805Clytia hemisphaericaexon
TCONS_00049617-exon-scaffold_161-1510915933:161017..161805TCONS_00049617-exon-scaffold_161-1510915933:161017..161805Clytia hemisphaericaexon
TCONS_00049617-exon-scaffold_161-1575043694:161017..161805TCONS_00049617-exon-scaffold_161-1575043694:161017..161805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:161017..161805 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0611685	0.0596489	0.484807	0.677583	8.90883	4.4977	66.6882	80.765	80.1533	123.8	76.6593	41.0231	10.8619	7.47788	11.3231	19.3827	7.20928	6.73036	12.2894	20.9571	8.10234	9.08681	8.20575	8.73547	22.0008	22.1555	58.6281	39.2961	25.6633	14.941
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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