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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049615 ID=TCONS_00049615|Name=TCONS_00049615|organism=Clytia hemisphaerica|type=transcript|length=2191bp
GCCCCATAAATTTCTGGTCTTAAGAACTTTTTGGTGTTCCTGAAACAATT
TGACATATCCAAAAGTATGGAGGCAAATTTACTCTTTGTTAATTATCact
taccatcaactgctccaacttgggactacgacgcaacatgggacggccat
tccaccaccatttcaccaaacctccaaagttgtttgatttgagtttaaag
aattgtgtattaaaaaatacaagatcTCTCTTtcacaccgagtaggcttt
taaattaaaatatgaaaaaaatccacaGTGGAACACGTGCGAGtgtctgg
aacaaagaagaccaaattaatGGAAAAATGATGGAgcatttgacgtcact
cgccTACAAGTTACACACTGTTAATCCCATTGGGCAGTAGGCGGTTAGGC
TATTaggttctctaattctccattcgacgtccggtcattttgaacgaaaa
caaaagttaaaaagggcgcgctatcagtgaaagttatcgtgacatgttat
gacagaaaatatgattgataaacttggtggagttatcaaaacaaatttgt
tgtcaaagagatttaacagtaagtgaaaatacaggccagatatcaacaag
tcccatgttgcgaccACTCGTctcaagttggagcagttgacggtaaacaG
TTGAATGATCCAAAATGAATAAACAGTTCAACTGGTGACTATAAAATGGT
TGATTGAAGGTCTCAAAAGCTCGAACTttgctaaaattgaaaaaaaaaaa
tccagaaaagaTTCTAGATTTTTGGCTAAAAACCTAAAAGCTCAaagaaa
gatagtattttttaaagtctcaaaatctctaaaaatgttGCAGCTACTTC
AACAACATGCATTTATTTTATACCCTGCATCTCTGTTCTGCTTTATTTGG
ATAATTCATTGGTCGATACAGACAAAGGCCCATTTCCTGATGCAAGTGGG
AATCAAATCTTACTGCCTCTGAAGCAACCAAGGTTAATGACCACTATGCC
AAATCATTAGTATGTTTATAGTCATGATAGCTTATAATGAATATGATCTC
CACTATGGCAATTGAATAAGAATCAAAACCTACATCATCTCCACAAACTT
GTAGCTATTTTTTGTCAATCTAGATTGTATTTACAATAAAGAAGATTCAC
TTAAATTTACCTTGAAATATATGGGCATGATAAAATGCAGATGAGATATT
TATGTACTGGATAGACTGACACTCTCTAGGTTTGCAATAATAAGGACCTG
ACACTGCTTgattgtaaatatttccttggGGCAGGAATATCGATAATAAT
ACCACGTGGTCTAAGACTTGCAATGCTGATCTCATTGATGCTTCTACAGT
CTTTGACATaaagttttttaagatttttgcaaTATTCTCTGATTATAAAA
ACAGACTGATTTGTTACTCTCCAACATCCACTGATGTCAATTTCTTGAAG
TTTGGAACAGCTTTTTGCTAAAGTTGAGATAGAAATATCTGTCAAAGAAT
AACAAGATGAACTGTGAAATTCCTTCAATTCTTTGTTGTTGAGTGCAATC
GCTTCAACACAATCATCATTAGCACCCCAACAACCAGAAATATCAATGGA
TACAAGTGTTTTTATGTTGTTTCCAATAAAAACCAATGTTTCTTTTGTTA
AAGACTTGCAGTGTGAAACATCTAATACCCTTACACTGTTAAGTTTGTTT
CCAAAATCTAAGAAAACTTCATTTGATATGTTGTAACAAGAAGAAATGAC
AACTTTTTTCAGTTTTACGTTTTGTAAAACAGTCAATCTTAAATGTTCAT
CTTTCAGCCAATGTTTACAAGAGGTAAAATCAATCTTTAAGAGGTTACGC
TTGTTTTGAATCATTCTCTTGAAAACATCTCCATTAAAAAGCTTCCCAGA
ACCAATAATTGACAAGTCAAATGTTGTACAAAAAGGAGAAATCAAGAAGT
TGGTCACtatttcatcaaaagttttgcacacaacttttaaacaaaacaaa
tcttttaaagaaaggaaaacaaatattttaccATACAAGACATCTTCTTC
TGGAAGCTTTGTGAACTCGGATGTTCCACAAGCTGTCATTCCCTTATCAT
TAAAGTAGAAATGATTAAATTGACGATGATTAGAATGGGGtcttcatctt
gattttttcAGCTTGTGACtgtttttcactttcgttttcac Run BLAST on NCBI protein sequence of TCONS_00049615-protein >TCONS_00049615-protein ID=TCONS_00049615-protein|Name=TCONS_00049615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MTACGTSEFTKLPEEDVLYGKIFVFLSLKDLFCLKVVCKTFDEIVTNFLI
SPFCTTFDLSIIGSGKLFNGDVFKRMIQNKRNLLKIDFTSCKHWLKDEHL
RLTVLQNVKLKKVVISSCYNISNEVFLDFGNKLNSVRVLDVSHCKSLTKE
TLVFIGNNIKTLVSIDISGCWGANDDCVEAIALNNKELKEFHSSSCYSLT
DISISTLAKSCSKLQEIDISGCWRVTNQSVFIIREYCKNLKKLYVKDCRS
INEISIASLRPRGIIIDIPAPRKYLQSSSVRSLLLQT Run BLAST on NCBI transcript from alignment at scaffold_161:123806..125996 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049615 ID=TCONS_00049615|Name=TCONS_00049615|organism=Clytia hemisphaerica|type=transcript|length=2191bp|location=Sequence derived from alignment at scaffold_161:123806..125996 (Clytia hemisphaerica)
gtgaaaacgaaagtgaaaaacaGTCACAAGCTgaaaaaatcaagatgaag
aCCCCATTCTAATCATCGTCAATTTAATCATTTCTACTTTAATGATAAGG
GAATGACAGCTTGTGGAACATCCGAGTTCACAAAGCTTCCAGAAGAAGAT
GTCTTGTATggtaaaatatttgttttcctttctttaaaagatttgttttg
tttaaaagttgtgtgcaaaacttttgatgaaataGTGACCAACTTCTTGA
TTTCTCCTTTTTGTACAACATTTGACTTGTCAATTATTGGTTCTGGGAAG
CTTTTTAATGGAGATGTTTTCAAGAGAATGATTCAAAACAAGCGTAACCT
CTTAAAGATTGATTTTACCTCTTGTAAACATTGGCTGAAAGATGAACATT
TAAGATTGACTGTTTTACAAAACGTAAAACTGAAAAAAGTTGTCATTTCT
TCTTGTTACAACATATCAAATGAAGTTTTCTTAGATTTTGGAAACAAACT
TAACAGTGTAAGGGTATTAGATGTTTCACACTGCAAGTCTTTAACAAAAG
AAACATTGGTTTTTATTGGAAACAACATAAAAACACTTGTATCCATTGAT
ATTTCTGGTTGTTGGGGTGCTAATGATGATTGTGTTGAAGCGATTGCACT
CAACAACAAAGAATTGAAGGAATTTCACAGTTCATCTTGTTATTCTTTGA
CAGATATTTCTATCTCAACTTTAGCAAAAAGCTGTTCCAAACTTCAAGAA
ATTGACATCAGTGGATGTTGGAGAGTAACAAATCAGTCTGTTTTTATAAT
CAGAGAATAttgcaaaaatcttaaaaaactttATGTCAAAGACTGTAGAA
GCATCAATGAGATCAGCATTGCAAGTCTTAGACCACGTGGTATTATTATC
GATATTCCTGCCccaaggaaatatttacaatcAAGCAGTGTCAGGTCCTT
ATTATTGCAAACCTAGAGAGTGTCAGTCTATCCAGTACATAAATATCTCA
TCTGCATTTTATCATGCCCATATATTTCAAGGTAAATTTAAGTGAATCTT
CTTTATTGTAAATACAATCTAGATTGACAAAAAATAGCTACAAGTTTGTG
GAGATGATGTAGGTTTTGATTCTTATTCAATTGCCATAGTGGAGATCATA
TTCATTATAAGCTATCATGACTATAAACATACTAATGATTTGGCATAGTG
GTCATTAACCTTGGTTGCTTCAGAGGCAGTAAGATTTGATTCCCACTTGC
ATCAGGAAATGGGCCTTTGTCTGTATCGACCAATGAATTATCCAAATAAA
GCAGAACAGAGATGCAGGGTATAAAATAAATGCATGTTGTTGAAGTAGCT
GCaacatttttagagattttgagactttaaaaaatactatctttcttTGA
GCTTTTAGGTTTTTAGCCAAAAATCTAGAAtcttttctggattttttttt
ttcaattttagcaaAGTTCGAGCTTTTGAGACCTTCAATCAACCATTTTA
TAGTCACCAGTTGAACTGTTTATTCATTTTGGATCATTCAACtgtttacc
gtcaactgctccaacttgagACGAGTggtcgcaacatgggacttgttgat
atctggcctgtattttcacttactgttaaatctctttgacaacaaatttg
ttttgataactccaccaagtttatcaatcatattttctgtcataacatgt
cacgataactttcactgatagcgcgccctttttaacttttgttttcgttc
aaaatgaccggacgtcgaatggagaattagagaacctAATAGCCTAACCG
CCTACTGCCCAATGGGATTAACAGTGTGTAACTTGTAggcgagtgacgtc
aaatgcTCCATCATTTTTCCattaatttggtcttctttgttccagacaCT
CGCACGTGTTCCACtgtggatttttttcatattttaatttaaaagcctac
tcggtgtgaAAGAGAgatcttgtattttttaatacacaattctttaaact
caaatcaaacaactttggaggtttggtgaaatggtggtggaatggccgtc
ccatgttgcgtcgtagtcccaagttggagcagttgatggtaagtGATAAT
TAACAAAGAGTAAATTTGCCTCCATACTTTTGGATATGTCAAATTGTTTC
AGGAACACCAAAAAGTTCTTAAGACCAGAAATTTATGGGGC Coding sequence (CDS) from alignment at scaffold_161:123806..125996 >TCONS_00049615 ID=TCONS_00049615|Name=TCONS_00049615|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_161:123806..125996 (Clytia hemisphaerica)
ATGACAGCTTGTGGAACATCCGAGTTCACAAAGCTTCCAGAAGAAGATGT
CTTGTATggtaaaatatttgttttcctttctttaaaagatttgttttgtt
taaaagttgtgtgcaaaacttttgatgaaataGTGACCAACTTCTTGATT
TCTCCTTTTTGTACAACATTTGACTTGTCAATTATTGGTTCTGGGAAGCT
TTTTAATGGAGATGTTTTCAAGAGAATGATTCAAAACAAGCGTAACCTCT
TAAAGATTGATTTTACCTCTTGTAAACATTGGCTGAAAGATGAACATTTA
AGATTGACTGTTTTACAAAACGTAAAACTGAAAAAAGTTGTCATTTCTTC
TTGTTACAACATATCAAATGAAGTTTTCTTAGATTTTGGAAACAAACTTA
ACAGTGTAAGGGTATTAGATGTTTCACACTGCAAGTCTTTAACAAAAGAA
ACATTGGTTTTTATTGGAAACAACATAAAAACACTTGTATCCATTGATAT
TTCTGGTTGTTGGGGTGCTAATGATGATTGTGTTGAAGCGATTGCACTCA
ACAACAAAGAATTGAAGGAATTTCACAGTTCATCTTGTTATTCTTTGACA
GATATTTCTATCTCAACTTTAGCAAAAAGCTGTTCCAAACTTCAAGAAAT
TGACATCAGTGGATGTTGGAGAGTAACAAATCAGTCTGTTTTTATAATCA
GAGAATAttgcaaaaatcttaaaaaactttATGTCAAAGACTGTAGAAGC
ATCAATGAGATCAGCATTGCAAGTCTTAGACCACGTGGTATTATTATCGA
TATTCCTGCCccaaggaaatatttacaatcAAGCAGTGTCAGGTCCTTAT
TATTGCAAACCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049615-exon-scaffold_161-1491911889:123806..125996 | TCONS_00049615-exon-scaffold_161-1491911889:123806..125996 | Clytia hemisphaerica | exon |
| TCONS_00049615-exon-scaffold_161-1510915933:123806..125996 | TCONS_00049615-exon-scaffold_161-1510915933:123806..125996 | Clytia hemisphaerica | exon |
| TCONS_00049615-exon-scaffold_161-1575043694:123806..125996 | TCONS_00049615-exon-scaffold_161-1575043694:123806..125996 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:123806..125996 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006553 | Leu-rich_rpt_Cys-con_subtyp |
| IPR032675 | L_dom-like |
Blast
BLAST of TCONS_00049615 vs. Swiss-Prot (Human)
Match: FXL15 (F-box/LRR-repeat protein 15 OS=Homo sapiens GN=FBXL15 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 3.162e-30 Identity = 69/273 (25.27%), Postives = 123/273 (45.05%), Query Frame = -1
Query: 1277 GMTACGTSEFTKLPEEDVLYGKIFVFLSLKDLFCLKVVCKTFDEIVTNFLISPFCTTFDLSIIGSGKLFNGDVFKRMIQNKRNLLKIDFTSCKHWLKDEHLRLTVLQNVKLKKVVISSCYNISNEVFLDFGNKLNSVRVLDVSHCKSLTKETLVFIGNNIKTLVSIDISGCWGANDDCVEAIALNNKE-LKEFHSSSCYSLTDISISTLAKSCSKLQEIDISGCWRVTNQSVFIIREYCKNLKKLYVKDCRSINEISIASLRPRGIIIDIPAP 2092
G G F LP EDVL + + L+ L L+ V + F +V L FD + +G R++++ L ++ C WL DE L + +N +L+ V + C +S ++ L ++HC + L + + L +D++ C D+ + +A L+ + ++ D ++ LA++C +L +D++GC RV + V + EYC L+ L V+ C + E S++ LR RG+ ID+ P
Sbjct: 10 GEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLAG--LRRFDAAQVGPQ--IPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPP 278
The following BLAST results are available for this feature:
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