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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049614 ID=TCONS_00049614|Name=TCONS_00049614|organism=Clytia hemisphaerica|type=transcript|length=1033bp
gtgaatttcttcatttttgttttctacATGTCGAAAGTTGAGGGCTCACC
TTTGATCTGTAATCCAACGGCATTGATGCTGAAAAAATAGAACCTACTGG
TTTTAAACTTCCTGTCAACTGATATGATTTTAATATGGAATACCAAGGAA
GCTTTGGTGTTAAATCAAGCTACAAAGTAATTTATTTTTAGGGTGCGACT
TGGTTTCAAGGCAAAATTGATATCGAGGTGAGTCGAGCAACACAATCCGC
CATCGAGGCTATCGAAAGAAATGGCGGTAATATAAAGACTGTTTATCACG
ATAAAATCGCCCTAAGGGCGTTACTCAAACCAGAGAAATATGATATCAGA
CCCAGGGCGGCACGCCCAAGTCACAAACATATTTTGTTTTACGCTGATGC
TAAGAATCGTGGATATTTAGCACATCCGGACGAAATTTCCAAATTGAAgg
aggaaaacaaaaaattaggtAGTTTGGTTGAGCAAGTCAAAGATCTCAAT
ATATCTTGATGATGTTACTATACATAATCAAAATGTAGAAGGAAAGCTTG
acattgtttttaaaacatCCTGACATTCTCCTGCGTGTTATCACTGCTTT
GAAAACTATGAAAGCCCTGCGAACTGTAGTTTTTGTTGTAACataatatt
tttgtaacgaattttTAGAAAAAGCCAAGATCTATCAGCTATAACATTAG
GACATGTTCCGCGTATATTTTCATTCGATTAAATAAGGGGTGAAGGGAAG
AAAATATAGAACTTAGAGCAAATACCTGTAAAAGCTTGACCAAATACGTT
TTGCTATCGGGCACGCGCCATACCTTAATTTCTCAATTTATTACGCCCTT
AGATTAATGCGTGGAAAATATTTCCATCCTATTGAAAATTTaagctgctg
gcatccactaacggattcgtgctccttatagactATTCTATTCTTTCACA
TACTACTATACTACTTGggattttgtagaggtctgcgattcagactacaa
tAAAATTGGTTTTTCCTCTAATTATTAGTACGG Run BLAST on NCBI transcript from alignment at scaffold_161:111473..112505 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049614 ID=TCONS_00049614|Name=TCONS_00049614|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at scaffold_161:111473..112505 (Clytia hemisphaerica)
CCGTACTAATAATTAGAGGAAAAACCAATTTTattgtagtctgaatcgca
gacctctacaaaatccCAAGTAGTATAGTAGTATGTGAAAGAATAGAATa
gtctataaggagcacgaatccgttagtggatgccagcagcttAAATTTTC
AATAGGATGGAAATATTTTCCACGCATTAATCTAAGGGCGTAATAAATTG
AGAAATTAAGGTATGGCGCGTGCCCGATAGCAAAACGTATTTGGTCAAGC
TTTTACAGGTATTTGCTCTAAGTTCTATATTTTCTTCCCTTCACCCCTTA
TTTAATCGAATGAAAATATACGCGGAACATGTCCTAATGTTATAGCTGAT
AGATCTTGGCTTTTTCTAaaaattcgttacaaaaatattatGTTACAACA
AAAACTACAGTTCGCAGGGCTTTCATAGTTTTCAAAGCAGTGATAACACG
CAGGAGAATGTCAGGatgttttaaaaacaatgtCAAGCTTTCCTTCTACA
TTTTGATTATGTATAGTAACATCATCAAGATATATTGAGATCTTTGACTT
GCTCAACCAAACTacctaattttttgttttcctccTTCAATTTGGAAATT
TCGTCCGGATGTGCTAAATATCCACGATTCTTAGCATCAGCGTAAAACAA
AATATGTTTGTGACTTGGGCGTGCCGCCCTGGGTCTGATATCATATTTCT
CTGGTTTGAGTAACGCCCTTAGGGCGATTTTATCGTGATAAACAGTCTTT
ATATTACCGCCATTTCTTTCGATAGCCTCGATGGCGGATTGTGTTGCTCG
ACTCACCTCGATATCAATTTTGCCTTGAAACCAAGTCGCACCCTAAAAAT
AAATTACTTTGTAGCTTGATTTAACACCAAAGCTTCCTTGGTATTCCATA
TTAAAATCATATCAGTTGACAGGAAGTTTAAAACCAGTAGGTTCTATTTT
TTCAGCATCAATGCCGTTGGATTACAGATCAAAGGTGAGCCCTCAACTTT
CGACATgtagaaaacaaaaatgaagaaattcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049614-exon-scaffold_161-1491911889:111473..112505 | TCONS_00049614-exon-scaffold_161-1491911889:111473..112505 | Clytia hemisphaerica | exon |
| TCONS_00049614-exon-scaffold_161-1510915933:111473..112505 | TCONS_00049614-exon-scaffold_161-1510915933:111473..112505 | Clytia hemisphaerica | exon |
| TCONS_00049614-exon-scaffold_161-1575043694:111473..112505 | TCONS_00049614-exon-scaffold_161-1575043694:111473..112505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:111473..112505 . |
Blast
The following BLAST results are available for this feature:
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