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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049613 ID=TCONS_00049613|Name=TCONS_00049613|organism=Clytia hemisphaerica|type=transcript|length=1755bp
atagatcttaaaatacaaaaaaacaaaaaaaaatggcaAAGAATAAAAAC
GACAAATCACTGTATAGCGTTGTTATCTTGCTACTTGGTAGCGTTGGTGG
ACTTGCAGCTATAGCTTACTTTCTCTGGCTACCCAACTTGATTCATGAGT
TTGACAAAGCACCATCCTACATCTTGGAGATGTTAAAATCAGCTGCTTTG
TACACTTATATCCCTTTTGTATTATGGTGTTTCATCCTTGGCGAGGCGAC
CATGAATCTTAGTCAAGTTGACAAGATCTGGTCTCTATCGCCACCCACGT
TCTGTTGGTATATCACTTGGTACGATGCGAAGGAGCACGATATGACATTT
AATTATAAACTCGTCTACATGTCTTGTTTGGTATCTATATGGGGTGCAAG
ATTGACATACCAGTTCTACAAGAAAGGTGGTTATTCGATTCGATTCTGGA
CTGGAGAAGAAGATTACAGATGGGAAACCGTACGCCGACGATTACCGATA
CTGAATAATCGTTTTGTGTTTTTCCTTTTCGATCTTGGCTTTCTATGCGT
TTATCAGTTACTGCTTTTGTTTACCATTAGTGCTGTTGTCATGGTCGCAA
CCATAATGGTAGACAAAGCTGTAGACCTACCACGTGATTCCTTAACAACG
ATTGATTTAATCAAAGGTTCCGTTATGCTACTTCTAATCTACTTGGAAAC
TGTCTCTGATTCACATCAACAGGTCTTCCAGTTAGAAAAATATCGTCGAA
TCCGTGAAAAAATTCCACTGGAATGCTCCACAAACCATTACGAAAGTGGC
TTCAACACGAATGGCTTATTCGCATACTCCAGACATCCAAACTTCATCGC
TGAGCAACTTATCTGGGTTGTTTTCTACTTATTCTCCGTGACGCATTTTG
CAGACCTGAAGACCTGTTTTAACCTTGGTGGACCCTTTAATGCGGCCTCT
ATCGGCACTGTTTTATTGATTGTTCTCTTCTTAAAGTCGACTGACCTCAC
GGAAGATATATCAGCAGCTAAGTATCCACTATATGTCAAATACCAACGCA
ATGTTGCCCGTATTTTCGATGTCGGTGCTGTTTttagaaagttgttttta
ggACAAAACCCTAACAGAGATTGGCTTGTTAAATAATTGACTATACAGTA
TGTTTAATGGAATGATAAACTCTCGGAATAGCACTGATTATTATATAGCA
TTTTTTTAAGCACTAAATTATATTTCCTTTAGCAGATTCTAGAAGTAATA
TTGATTCTTTTTGACTAGCAAATATCACATCTTTAGAGGCTTTTTTACAA
CATTGAATATAGAATATGATacagtctaagacgaatcactatctaagaga
AAAGCTAAAAgctgaagaaaattcgcaaacgagtttttttgccgaaaaga
gtttacagtcggtagtgttgccagtcggtagagttgccgtttcttcgaaa
atctcccgccgatttttccccgtataccgccataatgCCATACCGAATCA
ATTACACTTGATTGTCCATAACACGAACTTCTttaattcgaatgtctcct
aAACACAAACAAATTCGTTGGCACCATGCATTTTTCTCGATGACTAATTT
GATGACTAATTTGATGATGATCAATTACCTCAAAtaatttattttagaaa
tagttttctttaaattttaagaATTAACTTACTCATAGCATATTTAGCAA
TAGCAGCAAATCATAtgataaaaatatatcaaatacactgaaataaataa
ataat Run BLAST on NCBI protein sequence of TCONS_00049613-protein >TCONS_00049613-protein ID=TCONS_00049613-protein|Name=TCONS_00049613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MAKNKNDKSLYSVVILLLGSVGGLAAIAYFLWLPNLIHEFDKAPSYILEM
LKSAALYTYIPFVLWCFILGEATMNLSQVDKIWSLSPPTFCWYITWYDAK
EHDMTFNYKLVYMSCLVSIWGARLTYQFYKKGGYSIRFWTGEEDYRWETV
RRRLPILNNRFVFFLFDLGFLCVYQLLLLFTISAVVMVATIMVDKAVDLP
RDSLTTIDLIKGSVMLLLIYLETVSDSHQQVFQLEKYRRIREKIPLECST
NHYESGFNTNGLFAYSRHPNFIAEQLIWVVFYLFSVTHFADLKTCFNLGG
PFNAASIGTVLLIVLFLKSTDLTEDISAAKYPLYVKYQRNVARIFDVGAV
FRKLFLGQNPNRDWLVK Run BLAST on NCBI transcript from alignment at scaffold_161:109313..111067 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049613 ID=TCONS_00049613|Name=TCONS_00049613|organism=Clytia hemisphaerica|type=transcript|length=1755bp|location=Sequence derived from alignment at scaffold_161:109313..111067 (Clytia hemisphaerica)
attatttatttatttcagtgtatttgatatatttttatcaTATGATTTGC
TGCTATTGCTAAATATGCTATGAGTAAGTTAATtcttaaaatttaaagaa
aactatttctaaaataaattaTTTGAGGTAATTGATCATCATCAAATTAG
TCATCAAATTAGTCATCGAGAAAAATGCATGGTGCCAACGAATTTGTTTG
TGTTtaggagacattcgaattaaAGAAGTTCGTGTTATGGACAATCAAGT
GTAATTGATTCGGTATGGcattatggcggtatacggggaaaaatcggcgg
gagattttcgaagaaacggcaactctaccgactggcaacactaccgactg
taaactcttttcggcaaaaaaactcgtttgcgaattttcttcagcTTTTA
GCTTTtctcttagatagtgattcgtcttagactgtATCATATTCTATATT
CAATGTTGTAAAAAAGCCTCTAAAGATGTGATATTTGCTAGTCAAAAAGA
ATCAATATTACTTCTAGAATCTGCTAAAGGAAATATAATTTAGTGCTTAA
AAAAATGCTATATAATAATCAGTGCTATTCCGAGAGTTTATCATTCCATT
AAACATACTGTATAGTCAATTATTTAACAAGCCAATCTCTGTTAGGGTTT
TGTcctaaaaacaactttctaaAAACAGCACCGACATCGAAAATACGGGC
AACATTGCGTTGGTATTTGACATATAGTGGATACTTAGCTGCTGATATAT
CTTCCGTGAGGTCAGTCGACTTTAAGAAGAGAACAATCAATAAAACAGTG
CCGATAGAGGCCGCATTAAAGGGTCCACCAAGGTTAAAACAGGTCTTCAG
GTCTGCAAAATGCGTCACGGAGAATAAGTAGAAAACAACCCAGATAAGTT
GCTCAGCGATGAAGTTTGGATGTCTGGAGTATGCGAATAAGCCATTCGTG
TTGAAGCCACTTTCGTAATGGTTTGTGGAGCATTCCAGTGGAATTTTTTC
ACGGATTCGACGATATTTTTCTAACTGGAAGACCTGTTGATGTGAATCAG
AGACAGTTTCCAAGTAGATTAGAAGTAGCATAACGGAACCTTTGATTAAA
TCAATCGTTGTTAAGGAATCACGTGGTAGGTCTACAGCTTTGTCTACCAT
TATGGTTGCGACCATGACAACAGCACTAATGGTAAACAAAAGCAGTAACT
GATAAACGCATAGAAAGCCAAGATCGAAAAGGAAAAACACAAAACGATTA
TTCAGTATCGGTAATCGTCGGCGTACGGTTTCCCATCTGTAATCTTCTTC
TCCAGTCCAGAATCGAATCGAATAACCACCTTTCTTGTAGAACTGGTATG
TCAATCTTGCACCCCATATAGATACCAAACAAGACATGTAGACGAGTTTA
TAATTAAATGTCATATCGTGCTCCTTCGCATCGTACCAAGTGATATACCA
ACAGAACGTGGGTGGCGATAGAGACCAGATCTTGTCAACTTGACTAAGAT
TCATGGTCGCCTCGCCAAGGATGAAACACCATAATACAAAAGGGATATAA
GTGTACAAAGCAGCTGATTTTAACATCTCCAAGATGTAGGATGGTGCTTT
GTCAAACTCATGAATCAAGTTGGGTAGCCAGAGAAAGTAAGCTATAGCTG
CAAGTCCACCAACGCTACCAAGTAGCAAGATAACAACGCTATACAGTGAT
TTGTCGTTTTTATTCTTtgccatttttttttgtttttttgtattttaaga
tctat Coding sequence (CDS) from alignment at scaffold_161:109313..111067 >TCONS_00049613 ID=TCONS_00049613|Name=TCONS_00049613|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_161:109313..111067 (Clytia hemisphaerica)
TTATTTAACAAGCCAATCTCTGTTAGGGTTTTGTcctaaaaacaactttc
taaAAACAGCACCGACATCGAAAATACGGGCAACATTGCGTTGGTATTTG
ACATATAGTGGATACTTAGCTGCTGATATATCTTCCGTGAGGTCAGTCGA
CTTTAAGAAGAGAACAATCAATAAAACAGTGCCGATAGAGGCCGCATTAA
AGGGTCCACCAAGGTTAAAACAGGTCTTCAGGTCTGCAAAATGCGTCACG
GAGAATAAGTAGAAAACAACCCAGATAAGTTGCTCAGCGATGAAGTTTGG
ATGTCTGGAGTATGCGAATAAGCCATTCGTGTTGAAGCCACTTTCGTAAT
GGTTTGTGGAGCATTCCAGTGGAATTTTTTCACGGATTCGACGATATTTT
TCTAACTGGAAGACCTGTTGATGTGAATCAGAGACAGTTTCCAAGTAGAT
TAGAAGTAGCATAACGGAACCTTTGATTAAATCAATCGTTGTTAAGGAAT
CACGTGGTAGGTCTACAGCTTTGTCTACCATTATGGTTGCGACCATGACA
ACAGCACTAATGGTAAACAAAAGCAGTAACTGATAAACGCATAGAAAGCC
AAGATCGAAAAGGAAAAACACAAAACGATTATTCAGTATCGGTAATCGTC
GGCGTACGGTTTCCCATCTGTAATCTTCTTCTCCAGTCCAGAATCGAATC
GAATAACCACCTTTCTTGTAGAACTGGTATGTCAATCTTGCACCCCATAT
AGATACCAAACAAGACATGTAGACGAGTTTATAATTAAATGTCATATCGT
GCTCCTTCGCATCGTACCAAGTGATATACCAACAGAACGTGGGTGGCGAT
AGAGACCAGATCTTGTCAACTTGACTAAGATTCATGGTCGCCTCGCCAAG
GATGAAACACCATAATACAAAAGGGATATAAGTGTACAAAGCAGCTGATT
TTAACATCTCCAAGATGTAGGATGGTGCTTTGTCAAACTCATGAATCAAG
TTGGGTAGCCAGAGAAAGTAAGCTATAGCTGCAAGTCCACCAACGCTACC
AAGTAGCAAGATAACAACGCTATACAGTGATTTGTCGTTTTTATTCTTtg
ccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049613-exon-scaffold_161-1491911889:109313..111067 | TCONS_00049613-exon-scaffold_161-1491911889:109313..111067 | Clytia hemisphaerica | exon |
| TCONS_00049613-exon-scaffold_161-1510915933:109313..111067 | TCONS_00049613-exon-scaffold_161-1510915933:109313..111067 | Clytia hemisphaerica | exon |
| TCONS_00049613-exon-scaffold_161-1575043694:109313..111067 | TCONS_00049613-exon-scaffold_161-1575043694:109313..111067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:109313..111067 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
| cellular_component |
GO:0005737 |
cytoplasm |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
Blast
The following BLAST results are available for this feature:
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