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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049604 ID=TCONS_00049604|Name=TCONS_00049604|organism=Clytia hemisphaerica|type=transcript|length=2290bpRun BLAST on NCBI transcript from alignment at scaffold_161:151179..171546- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049604 ID=TCONS_00049604|Name=TCONS_00049604|organism=Clytia hemisphaerica|type=transcript|length=20368bp|location=Sequence derived from alignment at scaffold_161:151179..171546- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049604 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4) HSP 1 Score: 155.606 bits (392), Expect = 1.049e-38 Identity = 125/371 (33.69%), Postives = 175/371 (47.17%), Query Frame = 1
Query: 760 DHCHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTCD-EMSHCSPNPCSNGGKCHDFGHDYQ---CTCSNQNYGRHCENSHAQC--SSCDTNAECVRG----NCVCMSGYNGDGHFCEVSSRCHPNPCENGGICHDTDEGITCTCVHGFLGHQCQES-NPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHCEIHSM-CTPNPCHNGGVCHVMRETQSCHCPTRFTGEYCEVDHCSRCDAN-----AFCDNG----DCRCDEGYEGTGYECXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCDQTPCLSGSTCIDEPHGAYKCICREGYYGRNCD 1809
+ C ++PC NGG+C + G+ C+C ++G CQ + + CA NPC N G C ++ GYKC+C Y G TC+ ++ C+P+PC NGG+C DY+ C C G+ CE +C S C A C C C +GY+G ++ C PNPC NGG C D C C+ GF G C+E N C +PC N C ++ Y+C C A + G HCE ++ CT + C NGG C + +C CP FTG YC+ D + CD+ C +G C C +GY G + CD +PC +G C + H Y+C C G+ G CD
Sbjct: 755 NECESNPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQ-SEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDD-CRPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGANC-TDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHD-VNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQ-------------------------NLVHWCDSSPCKNGGKCW-QTHTQYRCECPSGWTGLYCD 1095 HSP 2 Score: 150.984 bits (380), Expect = 3.247e-37 Identity = 124/365 (33.97%), Postives = 163/365 (44.66%), Query Frame = 1
Query: 757 IDHCHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTC-DEMSHCSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCENSHAQCSSCDTNAECVRGNCVCMSGYNGDGHFCEVSSRCHPNPCENGGICHDTDEGITCTCVHGFLGHQCQES-NPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHCE-IHSMCTPNPCHNGGVCHVMR--ETQSCHCPTRFTGEYCEVD----HCSRCDANAFCDNG----DCRCDEGYEGTGYECXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCDQTPCLSGSTCIDEPHGAYKCICREGYYGRNCDQ 1812
+D C +SPC + G+C + G+ C+C YTG +C + CA NPCHNGG C + G+ C CP YH TC E++ C+ NPC +G C D + Y+C C G +C+ ++ +C S NPC NGG C D G CTC GF G CQ + N C NPC N G CI + G Y C+C PY G+ CE + + C P+PC NGG C E+ SC CPT + G+ CEVD S C A C N C C GY G E C PC +G +C D + A+ C C G+ G C++
Sbjct: 642 LDDCASSPC-DSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHGA-CRDSLNGYKCDCDPGWSGTNCDINNNECES---------------------------------NPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAG-YKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDD-------------------------CRPNPCHNGGSCTDGINTAF-CDCLPGFRGTFCEE 944 HSP 3 Score: 149.828 bits (377), Expect = 8.740e-37 Identity = 139/437 (31.81%), Postives = 190/437 (43.48%), Query Frame = 1
Query: 748 KQEIDHCHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYC--APNPCHNGGHCYEEDFGYKCSCPHEYHGLTCDE-MSHCSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCENSHA-------QCSSCDTNAECVRGNCVCMSGYNGDGHFCEVSS-RCHPNPCENGGICHDTDEGITCTCVHGFLGHQCQ-ESNPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHCEIHS-MCTPNPCHNGGVCHVMRETQSCHCPTRFTGEYCE--VDHCSR--CDANAFCDNG----DCRCDEGYEGTGYECXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCDQTPCLSGSTCIDEPHGAYKCICREGYYGRNCDQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNGGSCHATDQHNYKCICLTGYEGFNCQEDI 1995
++ ID C + C NGG+C + + + C CP +TG+ C E C PN C NGG C+ GY C C + + G C E + C+ C +G CHD + C C + G C + A + S+CDTN + C C SGY G +V NPCE+ G C +T C C+ G+ G +C+ + N C NPC N C+ + GE+ C C Y G HCE+++ C +PC + G C C CPT FTG C+ VD C+ C A C +G C C EGY GT E CD PC GS C D + C+CR GY G +C+ C PC++GG+C D + Y C CL G G NC+ ++
Sbjct: 255 EENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ-IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDE-------------------------CDPDPCHYGS-CKDG-VATFTCLCRPGYTGHHCETN--------------------INECSSQPCRHGGTCQDRD-NAYLCFCLKGTTGPNCEINL 642 HSP 4 Score: 146.362 bits (368), Expect = 9.359e-36 Identity = 126/380 (33.16%), Postives = 170/380 (44.74%), Query Frame = 1
Query: 754 EIDHCHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTCDE-MSHCSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCENSHAQC--SSCDTNAECVRG----NCVCMSGYNGDGHFCE-VSSRCHPNPCENGGICHDTDEGITCTCVHGFLGHQCQE-SNPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHCEIHSMC-----------TPNPCHNGGVCHVMRETQSCHCPTRFTGEYCE--VDHC--SRCDANAFCDN----GDCRCDEGYEGTGYECXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCDQTPCLSGSTCIDEPHGAYKCICREGYYGRNCD 1809
+I+ C SPC +G SC NT G+ C C Y+G+ C+ C PNPCHNGG C + C C + G C+E ++ C+ +PC NG C D Y CTC G HCEN+ C SSC CV G C+C G+ G +C+ + C PC +GG C D CTC G+ G CQ + C +PC N G+C + H +Y C+C + + G +C++ S+ C +GG+C T C C +TG YCE VD C S C A C + C+C GY G E C PC +G TC+D P+ YKC C G G +C+
Sbjct: 869 DINECVLSPCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGS--YCQHDVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCW-QTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGV-------------------------NCSEEIDECLSHPCQNGGTCLDLPN-TYKCSCPRGTQGVHCE 1219 HSP 5 Score: 132.109 bits (331), Expect = 2.814e-31 Identity = 101/284 (35.56%), Postives = 129/284 (45.42%), Query Frame = 1
Query: 766 CHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTCDEMSH-CSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCE------NSHAQCSSCDTNAECVRGN----------CVCMSGYNGDGHFCE-VSSRCHPNPCENGGICHDTDEGITCTCVHGFLGHQC-QESNPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHCEIH-SMCTP--------NPCHNGGVCHVMRETQSCHCPTRFTGEYCEVD 1533
C S C NGG+C + + FTC CP +TG CQ + C PC +GG C + Y+C+CP Y G C + H C +PC NGGKC Y+C C + G +C+ AQ D C G C C +GY G +CE + C P+PC+NG C D G +C CV G+ G C +E + C +PC N G C+ + Y C C G HCEI+ C P C N G C SC CP F GE CE D
Sbjct: 987 CTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGS--YCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPN-TYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGD 1267 HSP 6 Score: 122.479 bits (306), Expect = 3.204e-28 Identity = 91/282 (32.27%), Postives = 137/282 (48.58%), Query Frame = 1
Query: 742 FEKQEIDHCHNSPCTNGGSCTNTAHGFTCSCPGRYTGKVCQEHDSYCAPNPCHNGGHCYEEDFGYKCSCPHEYHGLTCD-EMSHCSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCENSHAQCSS--CDTNAECVRG----NCVCMSGYNG-----DGHFCEVSSRCH----PNPCENGGICHDTDEGITCTCVHGFLGHQCQE-SNPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHC-EIHSMCTPNPCHNGGVCHVMRETQSCHCPTRFTGEYCEVD 1533
F +++I+ C + PC NG +CT+ +TC+CP ++G C+ + C + C NGG C + + C CP + G C +++ C PC +GG C D Y+CTC G +C+N C S C +C + C C SG+ G CEV+++ C++GG+C D C C G+ G C++ + C +PC N C ++ G YSC C A Y G +C E C +PC NGG C + T C CP G +CE++
Sbjct: 941 FCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATC-TDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNTYKCSCPRGTQGVHCEIN 1221 HSP 7 Score: 118.242 bits (295), Expect = 6.899e-27 Identity = 135/450 (30.00%), Postives = 181/450 (40.22%), Query Frame = 1
Query: 751 QEIDHCHNSPCTNGGSC----TNTAHGFTCSCPGRYTGKVC-QEHDSYCAPNPCHNGGHCYEEDFG-YKCSCPHEYHGLTCDEMSHCSPNPCSNGGKCHDFGHDYQCTCSNQNYGRHCENSHAQC----------SSCDTNAECVRGNCVCMSGYNGDGHFCEVS-SRCHPNPCENGGICHDT-DEGITCTCVHGFLGHQCQES-NPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHCEIHS---MCTPNPCHNGGVCHVMRETQSCHCPTRFTGEYCE--VDHCSRCDANAFCDNGD----------CRCDEGYEGTGYECXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCDQTPCLSGSTCIDEP-HGAYKCICREGYYGRNCDQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNGGSCHATDQHNYKCICLTGYEGFNCQEDI 1995
Q+ + C ++PC N G+C + CSC ++G +C D+ C NPC NGG C YKC CP + G +C + C+ NPC+NGG+C F Y C C +G C +C +C R CVC + + G CE C P+PC+NGG C T D C C+ GF G C+E+ + C N C N G C+ +G Y+C C + G +C PN C NGG CH +C C +TGE C +D C A+A C +G C C G TG CH C PC GS C P +G C C GY G C Q +PC++ G C T +++C CL GY G C+ D+
Sbjct: 58 QDPNPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYR--CVCRATHTGPN--CERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACV-DGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDC----ASAACFHGATCHDRVASFYCECPHGR--TGLLCHLND------------------------ACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQ------------------DVDECSLGANPCEHAGKCINT-LGSFECQCLQGYTGPRCEIDV 453 HSP 8 Score: 85.8853 bits (211), Expect = 5.904e-17 Identity = 102/335 (30.45%), Postives = 136/335 (40.60%), Query Frame = 1
Query: 895 CHNGGHCYEEDFGYKCSCPHEYHGLTCDEMSHCSPNPCSNGGKCHDFGH----DYQCTCSNQNYGRHCENSHAQCSSCDTN----------AECVRGNCVCMSGYNGDGHFCEVSSRCHPNPCENGGICHDTDEGITCTCVHGFLGHQC-QESNPCFYNP--CHNSGRCISEGHGEYSCDCTAPYGGSHCE-IHSMCTPNPCHNGGVCHVMRE-TQSCHCPTRFTGEYCE--VDHC--SRCDANAFCDNG----DCRCDEGYEGTGYECXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCDQTP--CLSGSTCIDEPHGAYKCICREGYYGRNCDQ 1812
C NGG C + C C + G C + + C PC N G CH DY C+C+ G C ++C TN C C G++G C+ + C NPC NGG C + C C F G C Q+ N C P C + G C +E G Y C C A + G +CE + C+P+PC NGG C + T C C FTG+ CE +D C + C C +G +CRC E TG C E + C P C +G TC + HG Y C+C G+ G +C +
Sbjct: 31 CLNGGKCEAANGTEACVCGGAFVGPRCQDPNPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLD--NACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKS--CQQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNE-VGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPP--EWTGQYCTEDVDE-----------------------CQLMPNACQNGGTCHNT-HGGYNCVCVNGWTGEDCSE 334 The following BLAST results are available for this feature:
BLAST of TCONS_00049604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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