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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049600 ID=TCONS_00049600|Name=TCONS_00049600|organism=Clytia hemisphaerica|type=transcript|length=339bp
ttagttcGAACCCCACCGGTGGCAATCTTTCGattgaaaataaatttgca
ataaaaatGGTATTGAGTGAAGTCACAAAATCTGTGTGTCACGTGGAACG
AAACTTAAAATGTTTGAAAGACATGCCAAGGATTTCAGTTCAAAACATTC
GTGATTTTCGTGGTGCCTTCAAAAAGAAACAACGTGTTGGGCGTGGTCCT
GGTTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCA
AAGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTT
ATCGATTGGTACCAAAACATGGTTTCACTAATGCCAAGT Run BLAST on NCBI protein sequence of TCONS_00049600-protein >TCONS_00049600-protein ID=TCONS_00049600-protein|Name=TCONS_00049600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
SSNPTGGNLSIENKFAIKMVLSEVTKSVCHVERNLKCLKDMPRISVQNIR
DFRGAFKKKQRVGRGPGSGRGKTSGKGHKGQGQRGTMPRIGFEGGQTPFY
RLVPKHGFTNAK Run BLAST on NCBI transcript from alignment at scaffold_161:114586..120219- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049600 ID=TCONS_00049600|Name=TCONS_00049600|organism=Clytia hemisphaerica|type=transcript|length=5634bp|location=Sequence derived from alignment at scaffold_161:114586..120219- (Clytia hemisphaerica)
TTAGTTCGAACCCCACCGGTGGCAATCTTTCGGTAAGTCATTTAGTCAGT
CAGAAAACATAGAAAATAACTCACAAAGAACCAGAAAGTCAGAAAAACTA
CAAACAAGAGACTGGAAAGTACGAAATAAGTTCAGATATGTTTTTCATCT
TTATGAAGAAGCCACAACTAATTAAAAAAGACATAAAAGAGTGGAATTTC
CGACACATTTTGCGAAAGTACATGGATTTTCATCAAAATTTCCGACCACC
ACTGGAAAAAAAATAAATTCTGAGGTTAATGTTAATGCCACACAGGAACT
GACATTAGGAATTTGTACTCCTCAATAAACATATATTGTACGGCTAAAAC
AAAATAGCACAAGAACTAAGTTACAACTTTATCCTTGACAAAATTCACAA
GTCCTAAGGTCTGTATTAACTAAACATACAAGACATGCAAAAGCCTGTGT
ACAAAGGTACAATAATACAATGTAGACAAGCATAGAAGAGAGACATGTAA
ATGTCAAATTGTCAACAACTGTAAATGCCAGTCAAACATATGACACAAAT
TAGCATTTTATAAGTCATCTTAACGCGTCATCAACATAGATTGACAGCTA
AAAAGAACAATACAAAATACATCAGAAATTGAACAAATACTATGCAAAAC
AGCTTTAGAAAGATACAAAATAGAACAATAATAGATAGACTAACAATACT
AAAATACTTTACAATTCCCAATACAATTGACATAAACTAATACACATGAG
ACATTAAGTAATAATGATTAAGTGACAGTTATAAACGTTTTACATACAAA
ATACCTTTCAAAATGGATTTACAAACAAACGCTACAGAACAAAAGATAAA
TCAAATAAACGTAAAATCAAGAGCCTGACTGGCAGTAACAGTTAAAGAAA
ATTTAAAAATGCACGTCGTCCAACGAGGGGTAACAAAAATGTGGGCTTGA
ATCTGATTTCAACAAAAAATGGGTCGTCCGCCAAAAATAATTCTCGCCAA
ATTTAGAAAATTCATTAAATCGCCAAAATAAATTCCTCCAAATTGCACAA
AAAATGGACTAATTTGCCAAAATTTCTTCTCAGTCTCACCAAAATTTACC
GTTACAGGGAAAAAAATAGCATAAAAATACTGTAAAAATACTAAAAATAC
TGACTAAATTTTTTATGATCAGCTTTAAATGGGGGAGCTATTGGATTGGT
ATTGGATACGGTATGAAAACCAAGAAAATTAGACAATCTTGGAAATCTTA
CTTAAGGGAAATACAGGCTAATAGAAATTTTTGTTTGAGAGGTTTAATGG
TGTCATAGTGAAATCGTAGTGTAATACAACAAAGTTTTAGTTTCAGAGTC
AATGTTCCTAGAGGGAGACTTGATGTTTGGATGATTAATGATGAAGGGAT
AGGGGTGATAAAAGGAGAGGTGGGAGGGAAGGCAGGCTGCATCATTTGAG
GCTAAAATGTCTGAGGAGTGCGATCAATCACACCCCATAAAGTAAGTTTC
ACAACTGAAAGTTGTGCATAGCACTCCTTATCACACGCCTAAATTACTAA
AATTAAGGTTTTAGGAGTGTGATTGACCACACACCTGAAATTTTCAAATA
ATGCAGCCTGGGAAGAGGGGGAAAGGTTATTATCAGAGGGTGGGTGGGGT
TTAGCCAGTGGCGAGCTTGGTAAAGGTATGCACGTAGGTGAGCTTTAAAA
GTGGGTTTGCTAGTGATTTGGTCAAGGGAAGGTGATGAGTGTGTATTTTG
TTCCAGTTTTTTGTGATGAGATTTGCTATGTTATGGCATGGTTTCAGCCC
ACTTTTCAGGTGCCCCCATTGAGTTTTCCTTATGTATGGGTTACTTTCCA
CAGCAGAAATTCGAGAATTTTGTTTACTAGCAGTTACCAGGCCTATAATG
TATTGGTAAATATTCATTGTTAAATGAAAGTGAAAGTAAACAGAATTATT
TCTTCACAATGTCACAAAGTTGCATAGGAGTGGTGTCTTTGATATTTCCA
CCCGAAAATGGGGGTGGTACCTGAACTTTTTTCCCGGAAAATAGTTACTA
CCCTGGTGAAGTAAATGCAAACAGGGGTGGTGCCTAAAATTTCTTTCTGA
AAACAGTTACTACCCTGGTGTAGTAAATGCAAACAGGGGTGGTGCCTAAA
ATTTCTTTCTGAAAACAGTTACTACCCTGGTGAAGTAAATGCAAACAGGG
GTGGTGCCTAAAATTTTTTCTGAAAACAGTTACTACCCTGGTGTAGTAAA
TGCAAACAGGGGTGGTGCCTAAAATTTCTTTCTGAAAACAGTTACTACCC
TGGTGTAGTAAATGCAAACAGGGGTGGTGCCTAAATTTTTTCGCTGAAAA
CAGTTACTACTGACTACCCTGGTGTAGTAACTGCAATGGGTGGTGGTCCT
AAAAAAAGTGCTGAAAAGGCTCTTACTACACATACTGTCTTGTAGTAACT
GCGTGCTGATTTTTTGCACTAAGATGCGTATTAGCAATGCCCAAAACATG
GCCTATTCGGATTTTTGAGCAAATTTTTTTTTCCGGCCAAAAATGCCAGA
AATATGCTGAAAATCGTCGTTTTTCAGATTTTTCACACAAAAACATTAAA
CCCGAACTTTCTATTTTTTTCCCTACTCCCCTTTCCTCTCCCCCAATCAG
CAATCAATGATAAAATTTAACGCATTATGCAATTTCGCTAAACGCCATAT
TTTCTGACTGATGGTTTTCATTTTTCTCCTTATTGCTATATCTAATTTTC
ATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTGATAGTTTTTAAA
GAAAAGCGTTTGATAGCTTTTTTACTTTTTTTTCAAAAGTTTTTTTCAAT
AGTGTTAAAAGTTTCTCCCAATAGATATGCTTTCATTATATTTTTTTATT
TTGTTCAGTTATGTCTTATGTGTTTCATTGTTTCAATTTTCATAGATTCG
AAAATAGGTTCGAAAATTTTCGAAAAATTAACAAGCGGGGGGGGGGGGGG
GGGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTATCACTTGTT
TTGTATGCGTTTATACAAAAACTGTTTGGTTATCACACGGACGAATTTAC
CAATAGCTGAAAATATTTGGGTGGTGTCAAGTAGTTTTATGATAATTTCT
TAGTTCATCAGATTTGATTTTAGTGTCTTTTATGGAAGAACCCCAAAGTA
AAAGCTAATTTTAAAATATTTTTGTTACATTTTTCATTTTTCCCTTTGAC
TCCCAAGTTAGTTTCTCCGAAAGTCAGTTCTTTTCGGCTGTTTTTTTTTA
ATTTTCTCCCGTCGCTTACCCAGTCCCCTAAAAGTCAACGTGGTCATATT
TCCATACTAGAGAAATATGAAATATCGCAAATATCTCCATGCTCTTGACC
AATCAAAACGCTGACATTTTTTTGGGTCGGCAATAAGACGGTCTAGTGCA
TAACTGATTACTACAGCTTTCATTATGATACCCCCATACGTCAGTGGGTG
CAAGTAACTGAAGTAGAACAAGGGGAAAATTAGATATATTACCTAAAAAT
AAGTTTTGTTCAAATTGGCATGTAACATTCTCCTAAATTAGCACGTGATA
AGGCTGCGAATAGTGCACAACGTGCTATAAAGTATAAGGTTTTTATTCTG
TAATACGGATCATTTCCACCCTGACTGGCTGAGGTAATTTATTATGCGGA
ACTGAGTCAATAGGTCGTTGCAACTTTTCATAAAATTTTAGTACCATATA
AAAGTATTAATTTTGCAAGAATTGAGTTTTGTGTTGAAATAATCTGCATT
TTTGAGAAAAATAGTCCCAAGAAGACAAAATTTGTTCTTTATATTTGCCC
ACTAAGGATGGTCTTTATGTCAAAATTTATCAAACTATTTAAGAACCTGT
GTGTACCATAATACAACTTCTCTAAAATGGGTTATTTATGGCAAGCAAAA
AGTCAACAACGTTTTTGATACTTTTGTATGCCTTAGATTTTCTTACCAAC
CCCCCTCCCCCACCCCTACTTAGGCTGGCCCCTATGCCAAAATACCATGA
TACAACTTCTCTAAAATGGGTTAGTGGCAAGCAAAAAGTCAACAACCTTT
GATATTTTTGTATATATGCCTGGGATTTAGATACCAACGGTTAAGTTAAG
ATCTGGGTTAAATTAGGGTTTGAAAAAATGTAAATTAGGATATTTTTGTT
AAATTGGAAATAGGGTTAAATTTCAAATTAAGGATTTCCTCTCTTCATAA
TAAAAGAACAGGTTAATAGTAAAGTGATTTGTCGTAGATTAAAATGTTTT
TAACATAATAAATTAATAAATGTTTTTAATGATTATGTTACAATAATTCA
GATTGAAAATAAATTTGCAATAAAAATGGTATTGAGTGAAGTCACAAAAT
CTGTGTGTCACGTGGAACGAAACTTAAAATGTTTGAAAGACATGCCAAGG
ATTTCAGTTCAAAACATTCGTGATTTTCGTGGTGCCTTCAAAAAGGTATG
TATGTACACGCCAAATGATATTAGCGAGTTTATGTATCTGCACTTTTGAG
AACGGTAGAGTAACTGAAGCGATTTGGAAAAACCCGCATTTCTGACCCGC
ATTATCGAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGCAA
GGATCTAGTCAAATTAGAACCTTACCGTCTCCGTCGTTGAAAAACACACA
TACATAAACTCGGTATTGTGGAGTGTCTGTGTTTATAATACACATGGTGT
CTAAGACCAGCAGGACACTCTACATGCTGTACCTGCTAGTTCTAGAAAAA
TTAGCTTGAAATCTTCCCCAATGGGAGAACTATTTCCCATTGCAAATAAA
CCAAACAGTACTCTCAAAATTTTTAACTCGTTCTGGTTCCTCAAATGGCT
AAAGATTTTGTCATTGAAACAGGGGTGTATATAATGATAGTGTTTTCAGA
TTTTATATGTAAATAAATAATTTCTACTTTAGAATCTTTGATATACATAT
TTAATGAAATAAAGCGTCAGAAAATAAAGAGTCAAGATAATCTTGCAAAA
AGATTTTTGTAGCTAGAATACTCAATAAGCAAACTCTATATTTATCTAAT
TCTACTAACAATTCTTCGTAGAAACAACGTGTTGGGCGTGGTCCTGGTTC
AGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAAAGAG
GTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTATCGA
TTGGTACCAAAACATGGTTTCACTAATGCCAAGT Coding sequence (CDS) from alignment at scaffold_161:114586..120219- >TCONS_00049600 ID=TCONS_00049600|Name=TCONS_00049600|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_161:114586..120219- (Clytia hemisphaerica)
AAACAACGTGTTGGGCGTGGTCCTGGTTCAGGGCGTGGCAAGACAAGTGG
TAAAGGCCACAAAGGACAAGGTCAAAGAGGTACAATGCCAAGAATTGGTT
TCGAAGGAGGACAAACACCTTTTTATCGATTGGTACCAAAACATGGTTTC
ACTAATGCCAAGATTGAAAATAAATTTGCAATAAAAATGGTATTGAGTGA
AGTCACAAAATCTGTGTGTCACGTGGAACGAAACTTAAAATGTTTGAAAG
ACATGCCAAGGATTTCAGTTCAAAACATTCGTGATTTTCGTGGTGCCTTC
AAAAAGAGTTCGAACCCCACCGGTGGCAATCTTTCGAAACAACGTGTTGG
GCGTGGTCCTGGTTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAG
GACAAGGTCAAAGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAA
ACACCTTTTTATCGATTGGTACCAAAACATGGTTTCACTAATGCCAAGAT
TGAAAATAAATTTGCAATAAAAATGGTATTGAGTGAAGTCACAAAATCTG
TGTGTCACGTGGAACGAAACTTAAAATGTTTGAAAGACATGCCAAGGATT
TCAGTTCAAAACATTCGTGATTTTCGTGGTGCCTTCAAAAAGAGTTCGAA
CCCCACCGGTGGCAATCTTTCGAAACAACGTGTTGGGCGTGGTCCTGGTT
CAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAAAGA
GGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTATCG
ATTGGTACCAAAACATGGTTTCACTAATGCCAAGATTGAAAATAAATTTG
CAATAAAAATGGTATTGAGTGAAGTCACAAAATCTGTGTGTCACGTGGAA
CGAAACTTAAAATGTTTGAAAGACATGCCAAGGATTTCAGTTCAAAACAT
TCGTGATTTTCGTGGTGCCTTCAAAAAGAGTTCGAACCCCACCGGTGGCA
ATCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049600-exon-scaffold_161-1575043694:120188..120219 | TCONS_00049600-exon-scaffold_161-1575043694:120188..120219 | Clytia hemisphaerica | exon |
| TCONS_00049600-exon-scaffold_161-1575043694:115375..115518 | TCONS_00049600-exon-scaffold_161-1575043694:115375..115518 | Clytia hemisphaerica | exon |
| TCONS_00049600-exon-scaffold_161-1575043694:114586..114748 | TCONS_00049600-exon-scaffold_161-1575043694:114586..114748 | Clytia hemisphaerica | exon |
| TCONS_00049600-exon-scaffold_161-1510915933:120188..120219 | TCONS_00049600-exon-scaffold_161-1510915933:120188..120219 | Clytia hemisphaerica | exon |
| TCONS_00049600-exon-scaffold_161-1510915933:115375..115518 | TCONS_00049600-exon-scaffold_161-1510915933:115375..115518 | Clytia hemisphaerica | exon |
| TCONS_00049600-exon-scaffold_161-1510915933:114586..114748 | TCONS_00049600-exon-scaffold_161-1510915933:114586..114748 | Clytia hemisphaerica | exon |
| TCONS_00049600-exon-scaffold_161-1491911889:120188..120219 | TCONS_00049600-exon-scaffold_161-1491911889:120188..120219 | Clytia hemisphaerica | exon |
| TCONS_00049600-exon-scaffold_161-1491911889:115375..115518 | TCONS_00049600-exon-scaffold_161-1491911889:115375..115518 | Clytia hemisphaerica | exon |
| TCONS_00049600-exon-scaffold_161-1491911889:114586..114748 | TCONS_00049600-exon-scaffold_161-1491911889:114586..114748 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:114586..120219 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005749 | Ribosomal_L15_bac-type |
| IPR021131 | Ribosomal_L18e/L15P |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015934 | large ribosomal subunit |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0015934 |
large ribosomal subunit |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
The following BLAST results are available for this feature:
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