TCONS_00049572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049572
Unique NameTCONS_00049572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049572 ID=TCONS_00049572|Name=TCONS_00049572|organism=Clytia hemisphaerica|type=transcript|length=400bp
GACAAACACATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATAT
GATTTTGCTCTATATGGCATCAAATTCgaaagAGATTTGAGCAATTATAT
GGACCATAATTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGTT
TTGAAAATGGCGGACAACCACGTGCCCGGACAGGTGATTTGAAAGGAACA
AACCTTAAACGAATCAGCGGTCGTGAATTTTATTATACGATGACTGTTGA
TATTAAAGCTGTTGTTAACATCACAGACTGATTTTTTGCGTCCCAAGAAC
TCTTTTGAAAAGTTCGGAAAAACCGAAGGGAAAATTTACTCTCAGAAATA
CACAAATTTCctatatacatgtttttttttatacaaaaatccgaaaacag
Run BLAST on NCBI

transcript from alignment at scaffold_161:137756..138600+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049572 ID=TCONS_00049572|Name=TCONS_00049572|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at scaffold_161:137756..138600+ (Clytia hemisphaerica)
GACAAACACATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATAT
GATTTTGCTCTATATGGCATCAAATTCgaaaggtattttttttttaaatt
acctgACTGTGGCCCTAAACAAGGGAAAGTCCACCGTCACGTATCGGTTA
ATAAAACTTTGTCAGTGAAATGCTGCAATATTTCGTTTGTTCACGTTGAA
AAACTAAATTTCTAcgagaaaaaactatataagaacacaaggctacGATA
GCTAAAATATTAAGGACAAGCTAAGGATTTATGAACTCTAAAATTCTGTT
CTGTTCTGGAATCcgtttcagaattttcaaagtAAGCTAttcttatattg
ttgtttcttttaaactagtgttttttttctaaaataagcACCGcggttta
aatttatttttcgctATTTAGGGGAGGCGCTCATTTCGAAATATTGAGTT
TTGACCCATTTTTATCTTATTTGAAGGTTTTCCAACAAAGTACAATTTAA
CcacattttcctttaaaatattTGCAGAGATTTGAGCAATTATATGGACC
ATAATTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAA
AATGGCGGACAACCACGTGCCCGGACAGGTGATTTGAAAGGAACAAACCT
TAAACGAATCAGCGGTCGTGAATTTTATTATACGATGACTGTTGATATTA
AAGCTGTTGTTAACATCACAGACTGATTTTTTGCGTCCCAAGAACTCTTT
TGAAAAGTTCGGAAAAACCGAAGGGAAAATTTACTCTCAGAAATACACAA
ATTTCctatatacatgtttttttttatacaaaaatccgaaaacag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031439XLOC_031439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049572-exon-scaffold_161-1491911889:137756..137837TCONS_00049572-exon-scaffold_161-1491911889:137756..137837Clytia hemisphaericaexon
TCONS_00049572-exon-scaffold_161-1510915933:137756..137837TCONS_00049572-exon-scaffold_161-1510915933:137756..137837Clytia hemisphaericaexon
TCONS_00049572-exon-scaffold_161-1575043694:137756..137837TCONS_00049572-exon-scaffold_161-1575043694:137756..137837Clytia hemisphaericaexon
TCONS_00049572-exon-scaffold_161-1491911889:138283..138600TCONS_00049572-exon-scaffold_161-1491911889:138283..138600Clytia hemisphaericaexon
TCONS_00049572-exon-scaffold_161-1510915933:138283..138600TCONS_00049572-exon-scaffold_161-1510915933:138283..138600Clytia hemisphaericaexon
TCONS_00049572-exon-scaffold_161-1575043694:138283..138600TCONS_00049572-exon-scaffold_161-1575043694:138283..138600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:137756..138600 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.563746	1.74167	0	0.088187	0.388996	0.197941	2.56259	0	3.48551	4.72782	1.26665	3.83917	3.98795	2.43527	3.39028	2.03519	2.37048	1.77029	6.89286	4.9925	0.918119	1.27112	2.97793	1.72236	0.420551	0.976983	0.324249	1.35909	1.03083	0.748385
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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