TCONS_00049540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049540
Unique NameTCONS_00049540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1059

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049540 ID=TCONS_00049540|Name=TCONS_00049540|organism=Clytia hemisphaerica|type=transcript|length=1059bp
TGAATACCGGCCGTGAAGTCAAAAGACTCGATGCTGTCGCTAGAAGTCCA
CTTTACACTCATCTGTCAGCCACATTGTCCGGTATCTCTACTATCCGGGC
GTTTGGATTACAAGACCGGGTAACCAATGATTTCCATGATTGCACAAACT
ACCAAGCGGAATCGTGGTTGATGTTCATTTCATCTGTTCGGTGGTTCGGA
ATGAGATTGGATTTTATTTCACTTGTGTATTCAATGGTTGCAATATTCTC
TCCCATTATTTTACTTGATTTATCTGGAGAGATGGACCCGAATATTGCCA
GTGTCAGCATAACATACGCATTGACTTTGAGTGGTTTATTCCAGTTCTGT
GTTCGACAAAGTGCTGAAGCTGAAAATCTTATGGTGTCGGTAGAACGATT
AATGGAATATGCCGACATTGAAAATGAACCAGACAACGGTGATTTGAAGG
CCGACAAGAATTGGCCGGAAAAAGGCCGGATTACCGCATCACACACGTCT
TTCCGTTATCACCAATCTTTGGATAATGTGTTGAAAAAAATCTCCTTTGT
TATCAACGGTAGAGAAAAGATTGGAGTTGTTGGGCGTACGGGAGCTGGTA
AAAGCACTCTTTTGAATTTGTTGTTCCGAATGGGTGTTACAGATGGGCGT
GTTATCATCGACGATGTAGATATATCACGATTAAAATTGAAAGACCTTCG
AAGTTCACTCTCTATTATCCCACAGGATCCGGTCTTGTTCAATGGTACAT
TGCGTAAAAATTTGGACCCTTTCTCCAAGTACACAGATGATCAAATATGG
CAAGCTTTGACTGAGGTTCAACTCTCTGAGACAGTCGGTGATCTTCCAAA
CAAATTGGAAACTGAAGTTGCGGAATCAGGTTCAAACTTCAGCGTGGGTG
AAAGACAATTATTGTGCTTAGCCCGTGCTCTGTTGAAACGAAACAAAATC
TTGGTTATTGATGAGGCTACAGCCAATGTTGATTTCGAAACCGATTCTTT
GATTCAGGAAACGATTCGTATGAAATTCCAAGATTGTACAGTATTAACCA
TCGCTCATC
Run BLAST on NCBI

transcript from alignment at scaffold_160:72439..87493-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049540 ID=TCONS_00049540|Name=TCONS_00049540|organism=Clytia hemisphaerica|type=transcript|length=15055bp|location=Sequence derived from alignment at scaffold_160:72439..87493- (Clytia hemisphaerica)
TGAATACCGGCCGTGAAGTCAAAAGACTCGATGCTGTCGGTAAGTTTCCC
CGATTTCCTGATTTTGATTTTTTATTTTCCAGCGTTATTTTTTAAATCTG
AGAACCTTCTGCTTAGTGCAAAGGCAGAGCTTTCGGTCACGGTCTGCAAG
GTCGAGGGTTAAATCCTATGTCGGGTTATATCAGAGACTTCGTATTTTGT
TTACAAATTAGCACTTGATGTATCTCTGCTTGATCATCGGCAATTAAAGA
GATGGATCAAGGGTAAGTTGATCAATCCAGTGAGCCCTCCCTTATCAAGA
TAGCAATCGAAAGATGAGCCTTCAAGTTGCCTCTGACTGTGGTCACAGAC
TTACTTTTTTTCCCAAAATCTCGGCTATTGCTAGTTTAATTCCAGATTTC
TCTGAAAGTAAGCAAATTTTCCTCTCTCCCTGTTTAGTACACTAGCCTGA
TAAAATCCAGATTTTCGTCCCGAAAACGCATGACGTTATAGTTTAACATT
GCATAAATGAAACGAATAAATCTCATCTCCCTTAATACTCTTAGTAGCAG
TAAGTTTGCGACCGCAGTCGAGGGCGACCCGCAGGCTCCCTTGTCGTATA
GCTGTCCACCTTCCCTGGATTTCTCCACTTACCCTTGATCCGACTCTTTA
GTTGCTGAGCATCAAGCAGAGAGGCATCAAGTACCATTTTGGGAATCTTT
GGTATGACCCAGCTGGGGTTCGAACCCGCAACCTTGCGCACCGTAGCTGG
ATGCTCTACCTTCATGCTATGGTCGATTAATACTCTTACTCTTTTAGCTA
GAAGTCCACTTTACACTCATCTGTCAGCCACATTGTCCGGTATCTCTACT
ATCCGGGCGTTTGGATTACAAGACCGGGTAACCAATGATTTCCATGATTG
CACAAACTACCAAGCGGAATCGTGGTTGATGTTCATTTCATCTGTTCGGT
GGTTCGGAATGAGATTGGATTTTATTTCACTTGTGTATTCAATGGTTGCA
ATATTCTCTCCCATTATTTTACTTGATTTATCTGGAGGTAAGAATCAAAT
TCATATGTCGTCTATTTATTTTCGAAAAGTGTAAATTTAGAAAGAGCCTA
AGATATTTTAAAGAAAAAACCTTCATTACATAAGCAAAAAAACCTGCTTT
GAGGCCTAAAACGTTTCGAATTTGGAAAATGCATGAAATGGCTAGAATGG
ATTTAACGGGGATATGATTCGGCGAATGTCGACAGAAGTAATTTTTGGCG
GTAACATTTTTTTTCCGCTAAAATCTTTGTTTTAAGTTACTCAAAACAAA
CAAGCTGAAGCTTGAACACGTAAATCGTTATATACAAATTGTACGAATTA
CAAGTAGTCTCCTTAAATTGTCTTTAACAGATATTTTCTTTTCAAAATAA
AACGCACTGATCTATAATCATACTCTCCCTTACATTCTAGAGATGGACCC
GAATATTGCCAGTGTCAGCATAACATACGCATTGACTTTGAGTGGTTTAT
TCCAGTTCTGTGTTCGACAAAGTGCTGAAGCTGAAAATCTTGTAAGTTTT
TGTCCTATTCTGTTGTTTTTTTTATCATTTACATTTTCTATTTTTATCAC
TTTTAACGTGCGAACTCTTACTTTAACCAGTCGCAAACAGGGAACAACTC
TCCTGCTTTTTCAGATATATTTAGTCTTCAAGAACACAGAACATTTCATC
CTTAGGTTAACCTTTAACATACTAATATTGGTAGAAATAAACTTAACATC
ATTGTGCAATTACAATATCAGAGTCTAGCGTATTCGAACTTTTATTAAAT
CGAATCTTTCTATGATTCGAACTAAAATATTCGTCTCGGCAGCTGAAAGT
CTAATTCGATTTTCAATGGACCAAAAATCTTCTTCGAATAAAAGAACAGT
TCGAAATACAGAAAGAGTCGAACAAAGAAAGATTTGAATTACAGAGGTTT
CGAATTGAGAGAGAGTCACCCATATAATCTCAATGAACAAGATTCAATTT
GGATTTTTTTAATCGAGATTTTTCTATCTCTAGATGGTGTCGGTAGAACG
ATTAATGGAATATGCCGACATTGAAAATGAACCAGACAACGGTGATTTGA
AGGCCGACAAGAATTGGCCGGAAAAAGGCCGGATTACCGCATCACACACG
TCTTTCCGTTATCACCAATCTTTGGATAATGTGTTGAAAAAAATCTCCTT
TGTTATCAACGGTAGAGAAAAGGTAAGACCACGTGACCCGGCAAATTTCC
AGGATTTGGAGCTGCTACCGTTTTTAATCAAAAGATTGGGTTTTAGAATG
TGCCTTAGGCTCGAAAAAAGCAGACAGGAGGTCTGGGGCCTTGTAAACAG
CCCAACCAACTGGTCCAGGACAGTCCTGGTGTGGTCTATGGGGCAAAGCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGGAATTAAGTGCT
ATAATATCAAATATTTGAAGACATTTTTCACTAATTTACCTTTTTCCATA
GCTAATTTTATTTTTCATAAAGATTGAGTTCCCAAACTCAATTAAAGATT
CAGCTTCTGCTAGCGTTATCCGGTAGCAGAAAACCCCTGGAAATATGCCT
GGTGACTTGAAATAAAGCTGTTCTATTGGTTGATTTTCTGACTGGCGTCA
ACGGTAGAGAAAAAGAGCCGATAGTAAGTTTAACAGTCTAATATTCCTTC
ATCGCCGTATTCTTACCGAAATAAAGTTTTATTCCACGCTTCTAGATTGG
AGTTGTTGGGCGTACGGGAGCTGGTAAAAGCACTCTTTTGAATTTGTTGT
TCCGAATGGGTGTTACAGATGGGCGTGTTATCATCGACGATGTAGATATA
TCACGATTAAAATTGAAAGACCTTCGAAGTTCACTCTCTATTATCCCACA
GGTGTGTAAAGTTATTGTTTACGCTTGTTAATTTTTGGAAAATTTTTCCA
ACCAACCCGGGGGGGGGTTGTTTAGTAATTTTTAAAAATATTTTCAGCTG
TCAAAGGGAAGGCCCCTTATTTTGGTCTAAATAGCCTCATTTCAGCCTAT
ATTTATCTTATTTTTGGGTTTTCAAAAGTACAATTTCCAACCCCCGGCAA
TTAGGTCCCCTCCCCGTTTATTGAAATCTCGAAAAATTTCCAACCCCCCC
CCCCCGTTTATTTGGAACCTAAGAGTACATTATGAGTCTGGAATAGGATA
CAAGTTTATTGAATCTTGATTCTGGGAAATGCGGGATGTACAGTTGACGC
TCTCATAAACGATGCTCTACCATTCAAAACGCTCCCTTATTCGAAGAAAA
TCCAATTCGCCTTGAAAATCAAATTAGTGATCGTCAACTGTAGTGATCAT
CGTGTTGCATGGCACACAACGGTTTTTTTCGACGTTTATCTAACGTTCAC
AACGTCCATATAACGTTAGATGAACGTTGAAACAATGCTGTGTGCCAGCT
GGTTGTGTTGCATGGAAGCCTTTATCAAATTATGATTATTTATGATATTC
TTTACCATTAAATGTTTTTTATAACAACATCCAAAAAATTTTGAAGCCTT
TGGATGTTCTTAAAAAACTAATTTTCTTAACATGTTCTTATTCTCACCAT
TTTGTGGGTATTTTTGACCATTTTCCTAAGAAATTTGGCTTTTCAAGGTC
CACAAGGTCTTAAAATGTTCTTGAACTTGTTCTCAATGTTTTAGCCATCA
AAGCCTTATGTTCTTATAATTTTATTCTTATAAAAACTATTTCATATTCG
TCAGGATCCGGTCTTGTTCAATGGTACATTGCGTAAAAATTTGGACCCTT
TCTCCAAGTACACAGATGATCAAATATGGCAAGCTTTGACTGAGGTAGGT
TTCAGGTTTTTATCTACTACAATACACCTATCTAACCTTTAAAATGTGAG
TAGACTGGGTTCGAGGTTACCAGGAAGATATATGACCACAAATATATTTT
ATAAAACACTAGATAGAGCTTTTCCTATCCTATTTGAAGCAAAATAATCC
GCCATCTTGAATGAAGTGACGTCATAATTTCGCTTGTGTGATCCTTGAAA
TTTTGAAGTCATTGCTATGTCCAAAAAGTTTCAACAGCGAAAAACCAAGG
CTACTACTGTGATCTACTTTCAGCAAAGATGGCGTACTATTTTGCTTCAC
CTGTCTTGGCTTGGAAAAGATAGAGCAGCTCTATTTAGTGTTTCATATAA
GATATCTGTGGGTATGACGTCTGAATGTCTGAAGTCGTTCCATTTTCATC
CTTAAATACAAAAAAAAAAGAAATCTGACGTCATTTCCTTGTATATCAAT
TACCTTTAAAGCTGACCGCGCCGCTAAGAGTTGATAGGTGTAAAGACCTT
TTCATAAATTATTTTGACTGACTCTTTTTCGAAAAATTACCAATTTGATT
AACCCTTTCCGGACGCACGGGCCACTGATGGGTGGCCCATGAATCGTGTT
CCTATATGACGGACGGGCCACCGGGTGGCCCATAGCTTTGTAAAAGATTT
TTTTTCGCGCCAAAATACAATAACATGGTTTTGAATAATGATTTTAAGAT
AAATTTCCCGTAACCTGCAAAAACCGCTTTTTCGATATCTTGTTTACAAC
TAGAATTATAAATTTTCAATGTTTGTTGTAAATTTACTCAGGCTAAATCT
GTAAGGGAAAAATTGCTCAAAAATTTGGACAAAAAATCACTTTACTCAGA
TTCTAAATCATATTCAAAGTTCAAGACGTAAAGCATCAAATGCCTTTTAC
TCTATTTCTTTATTCAAAGTCAAAAATTTTGCTGCTCCGAAAAATCGGTC
ACCTGACCAGGTGTCAGCCATATTTCAAAATTTTTTTTTGGTATTTCAAA
ACCCATATTACATGTGAAAAAATGAGGTTTTACTTTTCGTGATATCTTTT
ATCAATCACTTTCTATTGCAATTTTAGTGAAGCCAGTCAAAAATCAAATT
TTTGTTCGCGTCGTATAGCCGTGAAATCATGCGTCTGGAAAGGGTTAAAC
CCCTTGAGTCGTCTTCAAGTGTTACTTTTATAAATAGAGTACTGTAGACT
GAACTTCTCTTGGAATCAATTATGATAGCAATTATCAGAAAGAGGTAAAC
GTTGCTCGTGACATAGTTTGTACAAAGCTCTCTTCACTGATGAGGTTAGG
ATTTTTTTTTTCATCATAAGAACCGGCTTCCCCAAAATAAAATAGGGTTT
TTCCGCCTGAAAACAAAATGTTAAAAACAGTTTTTAAGCAAATGAAAAGT
TCTAATAATAAGTTGATTTTTAGAAAATAAGAAATGTTACGTCAACATAA
GAAAAATGTTGGGGACGAAAAGTGGGATTTATCGGGTATTACGAATCATA
ATAGCGGTTACAATGAAGCTTTGAGCTGCTTTGAGCGACACGCAAGAAAA
CTTGAATACCCAGCTAAAAGGTTTACCATCCCATGAATCTAAAGAATTAA
CGGTTAAACTATTATATTATTAAATTAACGGAATTCGCTTTTCGGTCTAT
ATAAGGTCTTCAGCAAAATAATGAGATAATTAATTCGATTTACATTTTCA
TTATCATTCTATGAAATAAACATTTGTCAGGTTGAAGAAATTATTTAGTT
ATTTATCATCAATAAAGTCAATAGTTTCTCTACCTTACTCAGGGAACAAT
TTCGGGTAATTAGACGAATTGCCTCACAAATTTGTCAAATGCGCCAAAAT
CTCTTTCCACTAATTCGAATTTTTTGGTCATTCGCCAAAATTAATTCTCA
CTAAATTTAACAAAGTAACTTGGCATTCTTTCCCTTAAAATATCTTTTCT
AATAATTAATATATTTTGATCTCGTCTCTTTGCAGTTTGAAGAATATAAA
ATGGGAGCCATTAGTAAATCGAGCTCCAACTTTCATAACTTTTTACCGTC
CTCAACACGGTTAGCTTCAAATGGAATAATCAGAAACCCTCACAAAACTA
TCATTAAAAAAATCACTCCATTTCACAATAAACACTACAATTTATCATAG
TTTCATCCTCTTGTTTTTAATGAGCGTCGATACTCAATAGGAAATCTCGC
AAACTTAAGCCTTATTTCTAGTTTAGTATAGTTTTTCAATGGAGTTCAAA
TTTCAGGGTATTCTTTTTAACGGGGACCATTTCTTAGTCAATTTTTCCAT
TGGGTAGAGGGTCACAATGTGTCATACTTCTCACAGACGCCTCCTAAACG
CCCGTGGGCTTGAGATGGAACGGAGATGGGTGACATTGAGAATTGCTGTA
TCACATCTACTGCAACTATAATGGCGGATTCCTTGATCTTGGGTGTTGCA
CCCGGCTTGATCTCGCGCATTGCATCTTTGACATCTGTACCGCCATCGGG
AGGATACATTTCAGCTTGAGGTTTACGGCGATACTCGTTCCCATTGGGTA
GAGGGTCACTCTGTGTCTTGAACATTGGGGCATACTTCTCACAGACGCCT
CCTAAATGCCCGTGAGCTTGAGATGGAACGGAGATGGGTGACATTGAGAA
TTGCTGTGTCACATCTACTGCAACCATAATGGCGGATTCCTTGATCTTGG
GTGGTGCACCCGGGATGATATCGGGCATTGCATCTTTGACATCTGTTCCG
CCATTGGGAGNCAGACGCCTCCTAAACGCCCGTGGGCTTGAGATGGAACG
GAGATGGGTGACATTGAGAATTGCTGTATCACATCTACCGCAACTATAAT
GGCGGATTCCTTGATCTTGGGTGTTGCACCCGGCTTGATATCGGGCATTG
CATCTTTGACATCTGTACCGCCATCGGGAGGATACATTTCAGCTTGAGGT
TTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACAATGTGTCATACT
TCTCACAGACGCCTCCTAAACGCCCGTGGGCTTGAGATGGAACGGAGATG
GGTGACATTGAGAATTGCTGTATCACATCTACCGCAACTATAATGGCGGA
TTCCTTGATCTTGGGTGTTGCACCCGGCTTGATATCGGGCATTGCATCTT
TGACATCTGTACCGCCATCGGGAGGATACATTTCAGCTTGAGGTTTACGG
CGATACTCGTTCCCATTGGGTAGAGGGTCACAATGTGTCATACTTCTCAC
AGACGCCTCCTAAACGCCCGTGGGCTTGAGATGGAACGGAGATGGGTGAC
ATTGAGAATTGCTGTATCACATCTACCGCAACTATAATGGCGGATTCCTT
GATCTTGGGTGTTGCACCCGGCTTGATATCGGGCATTGCATCTTTGACAT
CTGTACCGCCATCGGGAGGATACATTTCAGCTTGAGGTTTACGGCGATAC
TCGTTCCCATTGGGTAGAGGGTCACAATGTGTCATACTTCTCACAGACGC
CTCCTAAACGCCCGTGGGCTTGAGATGGAACGGAGATGGGTGACATTGAG
AATTGCTGTATCACATCTACTGCAACTATAATGGCGGATTCCTTGATCTT
GGGTGTTGCACCCGGCTTGATCTCGCGCATTGCATCTTTGACATCTGTAC
CGCCATCGGGAGGATACATTTCAGCTTGAGGTTTACGGCGATACTCGTTC
CCATTGGGTAGAGGGTCACTCTGTGTCTTGAACATTGGGGCATACTTCTC
ACAGACGCCTCCTAAATGCCCGTGAGCTTGAGATGGAACGGAGATGGGTG
ACATTGAGAATTGCTGTGTCACATCTACTGCAACCATAATGGCGGATTCC
TTGATCTTGGGTGGTGCACCCGGGATGATATCGGGCATTGCATCTTTGAC
ATCTGTTCCGCCATTGGGAGGATAATTCTCAGCTAGAGGTTTACGGCGAT
ACTCGTTCCCATTGGGTAGAGGGTCACTCTGTGTCTTGAACATTGGGGCA
TACTTCTCACAGACGCCTCCTAAACGCCCGTGAGCTTGAGATGGAACGGA
GATGGGTGACATTGAGAATTGCTGCATCACATCTACTGCAACCATAATGG
CGGATTCCTTGATCTTGGGTGGTGCACCCGGCTTGATCTCGGGCATTGCA
TCTTTGACATCTGTTCCGCCATTGGGAGAATAATTCTCAGCTAGAGGTTT
ACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACTCTGTGTCTTGAACA
TTGGGGCATACTTCTCACAGACGCCTCCTAAACGCCCGTGAGCTTTAGAT
GGAACGGAGATGGGTGACATTGAGAATTGCTGTATCACATCTACTGCAAC
CATAATGGCGGATTCCCTGATCTTGGGTGGTGCACCCGGCTTGATCTCGG
GCATTGCATCTTTGACATCTGTTCCGCCATTGGGAGGATAATTCTCAGCT
TGAGGTTTACGGCGATACTCGTTCCCAGCACCAACATGTTTCATACGTTT
CGCATTGAAGTACTCTCTTGTGTTCTGCCGTGGCCGTAACAACATAACGT
AACATTTTCTACCGTACATCAAAAATAGAGTGACATAACAATTGATGGTT
AGGATAATGGCTCCTAGGAGTTCCTTATCGCTGTGTAGACGACGGAAATA
GGAAATCGGGAAACTAACGCTGAAGGAAACTGACGTGATCAAGATAGTGT
AGAACAACGACATTGCTTCATTCATGATGTCAGGTAGTTTACGGCAACGG
TACGCTTGGACAGAGCACGTCAGCTGGAAGACGGTTAAGAGTAGAATCTG
GATATACTGATGAATCAGAGTATTGCAATGGTTGAATCTAACCATAAATA
GATCATCAGTGTACGAAACCATATTTGGTGAAATTTGTAAGGAAGTTATA
GCTAGACAGCCATTGGTCAATATTAACAGTACAAAGACTGTAAACGTTTG
GAGTACCATTGTTCGTTTAATTTCCGTTGCTTTCAGTTTGATTTTAGAAG
CGAAAGCTTTGACAAGTTTCTGCGATTTAGTATAGAGACAGGAGACGTGT
AGAGTGTAGAGGATGCTTAGAATCAAAATTCGTCCTATGCATAATTCAAT
GTTGAGATATGGTATTATATGGAGACATCCCGTGAAAAAGAAAATTGAAA
AGATACTTCCAAGATGTAAGAACGATAGGAATTTGTCTGACGAACGCACT
ATCGGTGTATTGCCACAAACAAAATTAACATAATATGGCTAGTACACAAC
CTAGTCCTGACGTAGTACATAAAATCCAACGTTGTTCATCGTCAAACAGA
AGCGGTTTGTTTGTATAAGGGTCAACGCAAGCTGTTCGTTTGCCGTTATC
TATACTGAGAACACCAGTGCAAGGCGTGCAAGATCCATCACCCGTACCAA
GTTTTATTGTATTTTCCGGACAAAGCTCACATCTTGTGCGATGTTCTTCG
TCGAGTAATGTATTGGGGCTATTCACAAGACCGTACTTCGGTTGGAATCC
AGGCAAACAATTTGTAGACGGACATTTAAGCTCAGGGAAGAAAACATTTT
CCAAGTACTGATTGGTTCTTTCGTTAGTATTGACTGAAACCTCTTCGAAA
ATATAATTGAGAAGCGGTAACGTATATTGGCGTTTTAAGATATTTGTACT
TTCGCTGTAAACTTGCGGTAATAGACTATGAATACTGTCTTCAGGATTGC
GATTTAGTGCATCCCAACTTAAGATTCGTAAAAGACGGCGTATATAATCT
AACATCATAACGCGTTGCTCATCTTGGGATTGCAATTCGTGGAGATGTTG
TCGCCGTCTGTAGAACATCTCGAGCACGTTATAATTGTCACCATGTGCCG
CTTCCATTTTAATGTCTTGAAAAATAATGGTTCGATTTTTAAGGGGTTTA
ATTTCCTTTTTGTATTTGAACAAAGAAGCAAGTCCAAACAGGGTTGAATC
TATGTAAGAATCCCCAAAGAAAATAACAACGGAATTATCGACTCCAGGTG
ACGTTAGAAGAGGCATGATTTTGTTGCTTAAGAAAATATCAGGGAAATCC
TGAAAATTTTCCTCAATAAAATTTTTGTCATATTCAAGAAGTAAGTTAAT
TGTTTTCTTTTTGAGACAATATTTCTTCGTGTTCTTCAAGTGATCATAAG
TGTTCTGAAAATATTCTTCATACCGTGTTATGGGTTCATTGCTTTTGTTT
GATGATTGAACATTAACAAAAGTGACGTCATATAAACCGAATCGGTTTAA
AAAATCCGTCACTTGTAGAGTGTAATCCGTTAGCATGAAAATTGGGTAAC
GTTCGTCGCATCCCTGTGGGATACACAATCGAGCGATGAGTGGATAAAGA
CTGCTGACAATGTCTTGTATGATTTTTGTCATTTCTTCAGTCACGTGAGC
GACTATGAGAAAAATGTTTTGTTTGCGATAAATAGGAGAACGGGTTCTAT
TCAAAAGTGACCCACTTTTCGATTCCTCAGCCTGAGTAGTATTCCCTGTT
TCAATACCCTTGACTGGCGGAAAGAAATATTTTTGGTCCAGAAACAATTC
TGTTAGAAGTTTGATCAAAGTGTCCGTGTTATTACAAACGCTATAAGGAA
TGAAAGTGTTAGCTATCATGTTACTCAGCTCTTCACGAAAATCACTGATC
ATACGTCGAGACTTCAGATTAAACTCGTTGTCGGTGTCAGAATTCGACTG
ACGTCCGTCGCCGTCGGGACATGCGGAAAAAAAGCCGATGATCAGAAATT
GCTTTAAAATATGATCTTGTGCTCCACTTTCTTGTACTGGCGATCTGCTT
GTAACAAACATCAGCGATTGGAAAAATATAAGAATGAAACACATCATTAC
CACATATTGAACCATTGTCACCATCATTCAACAGCTTACGTTGATATGTG
CGTTAAGGTTAAAGTTACACGTCTTCACTCCTTTAACTCTAACTTCACTC
CTTACGAGAGCTGGACCAATGAGAAGCACTCGGTGGGCGTTTTAGGGCCG
TAGATAGTGAATCGTTAGCTTCCTTAAAACCTATCTGGTGAGATATACTA
GCAATCTTTAATAAATTTTTATGATAGCCGTAGATTTGATTTCCAATCAC
AAACTGTCCGATCAAAGTCACATTATTCAAGAAATTACAAAAGTCTTTGT
TTTTATACCTCTGATATCAGCCACTGAAACAAGCTTATGTAGCTTATAAG
CCCTACCCTAGCTGTTTTCTTACAACATTTATAATCTCGTTAGTAAATCT
ATAAATATAACTATGTTATGAGTAATGGCTTCAGCTTCAGTATTGAATCA
TATGAAATGGACATTGATTTGATGTATATCCTCGCGGATTTTCTTGTAAA
TATAAACATTCTAAATCTCTTTTCAGGCTATTCCTCAAAGATCCTTATCA
AAAAGACGTATGATAAAGATCATTTAATAAATCTTCTCTATCACATTATT
GGAAATCTTATTCGTTAAACTGTCAATTGCTGCAACTCGAGAGGTTCAAA
AAGGGCGTTTTTTTTGTTTTTTTTTTTACGATAATCGGTTCTTTCGTTGT
CTTTTGTTTAGTTCGTGCTCTAAAAAGTGGTTTTAGTCTTGGTTTTAGTG
GCTATTTTGAGATTTTTCCAATATAAGATTGCGGTTTTACAATAATTCCC
AGATCATAAGAAATTCAACAAGTTGAAGGTGATAAATATCTAGTATAGGG
CCGATCCCCTTTCCATTCTTTTTTGAACCTACCTCGGAGGTACTTTAATT
TAACTTTTGTTTGTTCGTCCGTTCGTCTGTTACCAGCTTTTAGGAATGGC
CCATTATTTTTTTCTGATTTCTTGCATAATAATGCAAAATGACAGTACCC
AAAAAGTTACGATTTTCAAAAAAATATTTTTTGGGCAAATTTGAACCAAA
ATAAAAACTGCCTAAAAATGGGGTTTTTCTAACTTCTTGCATAAAGATAA
AGGGCAAGTCTCTCTAAGTCGTTTTTTTCCAGGAATTTTTTTTTTGGCCG
TCAAAATCTTATTTTGGGAAATTCCCATGTTTTGTCATTTTTAAAATGAG
CATTTCTCGTGATTTTCATGGTATTTTTTTCTGATTTTTTTCACAGTGAT
TTAAAATAGTAATCTTTGAAATCTGAGGGAGCCCGATGTTCGAAAAAAAT
CGTTATTTAGTTTTTCCTTATTTTTCACACAGTGATGCGAAATTGTAATC
CTTAAAATGTAAGACTTCAAGATTTTTTGAAAGAAAAAGTTGTAGCCGAA
TTTGGGCCAAATTTTGGATTTGTGGAAATTGCTTCATTAGATTTTTTCTT
CATTAGAAGTATCTTAACATGAAAGAAAGGATTGTTTTTCTTTCTGCTCA
AAACTTAGTATGGCTTCTTACTTCTTACTTCTAAAACATCGGGAAGCCCA
GTGTGAAACAAGCTTCATCATGTTTTTCAAGCTCACGCATCTCTATGCTA
CGATGTTATCTTTTCGTCTTTTTCGTTCGAACATTTTCATCTTCATTCAG
CATGTTTCCGACTATCTATCTCAGGTAGGTCCATTCAACATGATGCTTGT
TTGTGTCAAAATAAGATTAAAAGTCTTGTTGCAAGTTTAGAAGACGAAAA
GAACTTTCCGTTTATCTTTTTAAGTCATCAAAACTAACAAGAAAAATATC
AGCTTTGTGTGAAGTGTGCACTGCGTTAATCCTCTTTTCTTATCTTCCTT
ACTTCAAATAGTTTTAATGTAGTCTAAAGATCACCAGAGCTTTGAATTTT
TGATACTCTAAAATGTCCTTAGGTGATAAACTAGTTCCCTAACCCGCTTG
AAGCACAAATGCCTCAGCTGCTGTACCAATTAACTTCCACAACGAAATTA
GTTTCTACACTCTAAAGTCAAAGTGCTTTGTATCTCATTTAAAAATAAAA
TTCTTAAACTCTCTCTTGACATTCTTGATACACGAAAAATCGTGTTCCTG
TTTTTCTATTTCTAAATTGTTAGTTAACTTATCGGCCAAAACCTAGTCGG
CCTTAATTTTAGTCGGCCCTAATTTTAGTCACCTCGTCAAAATTTAGTCA
CTAAGGGCCGACTAACAGTTAAGTTTTGGCCATTTCTAAATTTTTAGTCG
GCCCAGATTTTTGTTGGTCCTAATTTTTAGTCGGCCCTAATTTTAGTCAC
CAAGCCAAAATTTAGTCACTTAGGGCCGACTAAGTTTTGGCTGATACCCT
ATAACTTGCACTTGACAATGATCTGAAAATTCAATAAATGCCCTTTGTAA
ACGAAGTAATACGAAGTAATAGTCTGTCTGTCCGTCTGTCTCTGTTAAAT
TCAGTTGAACTACAATGTGACAATGTCTATCTGTTTGTCTGTCTGTCTGT
CTGTCTGTCTGTCTGACTTTTTGTCTGTCTGTCTCTATGTTACTAAGTCT
GTCTTTCACAAAGTCTTTAGGGCAGTCTGCAGACGAATTTCTAATTTTTG
CTGAAATTTGGCCTTCAAATAGTTGGAAAAATACGGGCTCAGGACGTTGC
GCACGTTTAAAATTAAAAGGCAAAAAAATTTCTCCAACCTCACATAAATA
TTTACTCTTAGGTGCCAAATAAACGGGCCCCCCGCTTGTTAATTTTTCGA
TTTTTTTCCAACCCCCCCCCCCCGGACCTTATTAGGTCCGTTTATTAATT
TTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTTACTCTAA
AAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTTATTTTAAGGTC
CATTTTCCAACCCCCCCCCCCGGACCTTATTAGGTCCGTTTATTAATTTT
TGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTTACTCTAAAA
AGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTTATTTTAAGGTCCA
TTTTCCAACCCCCCCCCCCGGACCTTATTAGGTCCGTTTATTAATTTTTG
AAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTTACTCTAAAAAG
CCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTTATTTTAAGGTCCATT
TTCCAACCCCCCCCCCCGGACCTTATTAGGTCCGTTTATTAATTTTTGAA
AAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTTACTCTAAAAAGCC
TCAATCTAGTCTATTTTGACCCTTTTTAGGGTTATTTTAAGGTCCATTTT
CCAACCCCCCCCCCCGGACCTTATTAGGTCCGTTTATTAATTTTTGAAAA
AATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTTACTCTAAAAAGCCTC
AATCTAGTCTATTTTGACCCTTTTTAGGGTTATTTTAAGGTCCATTTTCC
AACCCCCCCCCCCGGTAATTAGGTTCCCCCCGAAAAAATTTTCCAACCCC
CCCGTTTATTCGAACCCCCCCCCCGTTTATTTGGCACCTAAGAGTAGTAA
TTTCCAATCCTATGATTTTTATCCTTTAAGTGCATTTGTTTATTTTAGGT
TCAACTCTCTGAGACAGTCGGTGATCTTCCAAACAAATTGGAAACTGAAG
TTGCGGAATCAGGTTCAAACTTCAGCGTGGGTGAAAGACAATTATTGTGC
TTAGCCCGTGCTCTGTTGAAACGAAACAAAATCTTGGTTATTGATGAGGC
TACAGCCAATGTTGATTTCGAGTAAGAGATCTATATAATCTGATTTGAGT
AGAAGAAAACATTTGTGAGTCGAAAAGAATTTTACGGATTTTTGGGATTT
CCCTGAAGTTTTTTTTAGGTTATGAGCATCCTTCAAGACTTTTCCAAAAA
AATTTGTACCCCTTATGTTGAAGAGGTCTTTTTTGGAAAAGGTGACCCCT
GGAATTTTTGGGTTTTCAACCTCATTTAATTGACCAACCTGGATTTTTAC
ACTCGAAAAACTAAGGATGTATTAGACCTTCCTGAAAGTCACACATCCTC
AACTGGGGGTACAAACTATTTCTGGAATAATTGACACCCAAAATTCTATT
TAACAATATTTTCCCCACCATGTTCTGTTTTTAGAACCGATTCTTTGATT
CAGGAAACGATTCGTATGAAATTCCAAGATTGTACAGTATTAACCATCGC
TCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031424XLOC_031424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049540-exon-scaffold_160-1575043694:87455..87493TCONS_00049540-exon-scaffold_160-1575043694:87455..87493Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1575043694:86457..86696TCONS_00049540-exon-scaffold_160-1575043694:86457..86696Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1575043694:85953..86053TCONS_00049540-exon-scaffold_160-1575043694:85953..86053Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1575043694:85272..85460TCONS_00049540-exon-scaffold_160-1575043694:85272..85460Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1575043694:84493..84648TCONS_00049540-exon-scaffold_160-1575043694:84493..84648Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1575043694:83550..83639TCONS_00049540-exon-scaffold_160-1575043694:83550..83639Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1575043694:72873..73045TCONS_00049540-exon-scaffold_160-1575043694:72873..73045Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1575043694:72439..72509TCONS_00049540-exon-scaffold_160-1575043694:72439..72509Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1510915933:87455..87493TCONS_00049540-exon-scaffold_160-1510915933:87455..87493Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1510915933:86457..86696TCONS_00049540-exon-scaffold_160-1510915933:86457..86696Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1510915933:85953..86053TCONS_00049540-exon-scaffold_160-1510915933:85953..86053Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1510915933:85272..85460TCONS_00049540-exon-scaffold_160-1510915933:85272..85460Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1510915933:84493..84648TCONS_00049540-exon-scaffold_160-1510915933:84493..84648Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1510915933:83550..83639TCONS_00049540-exon-scaffold_160-1510915933:83550..83639Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1510915933:72873..73045TCONS_00049540-exon-scaffold_160-1510915933:72873..73045Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1510915933:72439..72509TCONS_00049540-exon-scaffold_160-1510915933:72439..72509Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1491911889:87455..87493TCONS_00049540-exon-scaffold_160-1491911889:87455..87493Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1491911889:86457..86696TCONS_00049540-exon-scaffold_160-1491911889:86457..86696Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1491911889:85953..86053TCONS_00049540-exon-scaffold_160-1491911889:85953..86053Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1491911889:85272..85460TCONS_00049540-exon-scaffold_160-1491911889:85272..85460Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1491911889:84493..84648TCONS_00049540-exon-scaffold_160-1491911889:84493..84648Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1491911889:83550..83639TCONS_00049540-exon-scaffold_160-1491911889:83550..83639Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1491911889:72873..73045TCONS_00049540-exon-scaffold_160-1491911889:72873..73045Clytia hemisphaericaexon
TCONS_00049540-exon-scaffold_160-1491911889:72439..72509TCONS_00049540-exon-scaffold_160-1491911889:72439..72509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:72439..87493 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02649	0.0289646	0.813687	1.05238e-06	3.75806e-06	1.11337e-06	1.77258e-06	3.23245e-07	5.96758e-08	0.0110703	2.50576	0.903236	2.63572	3.47946e-08	2.69392	4.31596	1.77106	2.60187	1.05411	3.67427e-07	1.44553	1.11206e-06	2.15435	1.40809	8.13178e-07	0.190211	1.55379e-07	4.20037e-07	1.77625	1.57287
Blast
[Close]
BLAST of TCONS_00049540 vs. Swiss-Prot (Human)
Match: MRP4 (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 365.54 bits (937), Expect = 5.872e-115
Identity = 178/352 (50.57%), Postives = 257/352 (73.01%), Query Frame = 3 
Query:    6 TGREVKRLDAVARSPLYTHLSATLSGISTIRAFGLQDRVTNDFHDCTNYQAESWLMFISSVRWFGMRLDFISLVYSMVAIFSPIILLDLSGEMDPNIASVSITYALTLSGLFQFCVRQSAEAENLMVSVERLMEYADIENE-PDNGDLKADKNWPEKGRITASHTSFRYHQSLDNVLKKISFVINGREKIGVVGRTGAGKSTLLNLLFRMGVTDGRVIIDDVDIXXXXXXXXXXXXXIIPQDPVLFNGTLRKNLDPFSKYTDDQIWQALTEVQLSETVGDLPNKLETEVAESGSNFSVGERQLLCLARALLKRNKILVIDEATANVDFETDSLIQETIRMKFQDCTVLTIAH 1058
            T R+VKRL++  RSP+++HLS++L G+ TIRA+  ++R    F    +  +E+W +F+++ RWF +RLD I  ++ ++  F  +IL   +  +D     ++++YALTL G+FQ+CVRQSAE EN+M+SVER++EY D+E E P     +    WP +G I   + +F Y      VLK ++ +I  +EK+G+VGRTGAGKS+L++ LFR+   +G++ ID +  + + L DLR  +SIIPQ+PVLF GT+RKNLDPF+++TD+++W AL EVQL ET+ DLP K++TE+AESGSNFSVG+RQL+CLARA+L++N+IL+IDEATANVD  TD LIQ+ IR KF  CTVLTIAH
Sbjct:  885 TSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFAVRLDAICAMFVIIVAFGSLIL---AKTLDAGQVGLALSYALTLMGMFQWCVRQSAEVENMMISVERVIEYTDLEKEAPWEYQKRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKSQEKVGIVGRTGAGKSSLISALFRLSEPEGKIWIDKILTTEIGLHDLRKKMSIIPQEPVLFTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAH 1233
The following BLAST results are available for this feature:
BLAST of TCONS_00049540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRP45.872e-11550.57Multidrug resistance-associated protein 4 OS=Homo ... [more]
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