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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049531 ID=TCONS_00049531|Name=TCONS_00049531|organism=Clytia hemisphaerica|type=transcript|length=2355bp
AATGAACTGAGATATTCAAAATATAAACTGATTAAGATACAAAATTGGGT
TAAGATACAAAATGGGGTTAAGATATAAAGGAGGGTTCAGATACAAAATG
GTTTGGATACAAAATaatacaaaataataaaaaaaatccaaaaactagAA
AATCAACGAACAGTTTTTAGGGTTTTCATCTGATGTTTGTGCGTTTCGAT
CCATTTATGAAACTTCGTCATGTCAAAATTGACGAGCATGCTTTcctttt
gatttgaaaagtaTTTATATTCTCGTCCAGGAGTTGATTGAAGTGCCTTT
TCGGCCACAATTTGTTTTACTAATTTAATGAGATCTCCGTCATCTCTTTT
CTTTGTATGTTTTCCTGAACGTTTTTTCAATTCGTTTTCATCGTCAAACT
TCTCTAGGAGCTCCTTATTGAAATGAAGTGCTTTTGCCTACCTTGTCATC
ACTTTTTCATCCATGGCATTTGGACCTAACTTTCTCTTGATGGTTTTCAC
CAGCCGGATGTAATGCTCGCATTGCAAATCCAAAGGTCATTTGCAAAAAT
CGAAAGGATTCATTTTATGGACCGAAAACTTGTTTGTTGGAAACAGAAGA
CACCTGCAAAAGGAACAGTCAGAATGATCGTGGCGGATGTGACGGATTAC
TTCAGACTGGAATGGTTTCAAGCATTTTACGTGTTCAGTCAAGATTCTCG
ATATTAACACAATATAGTTCAGACGTTGTTTTACATGTTCGGCTGGAGAA
CAAAGAAACGAACTGTTATCCAATTCGTCAATGGTGTATTTTGGGTGCGT
TCCGCTTAATTCGTCAGGTGGGGTGACTCTATCAAAAACAGCAAGTTTCG
CAGTATGGTGTGTGCTGACGTTTTGGTTGTTCTCGTCCATGTCTGACACT
TTATGGGTGGTATCCAAATTGTCGATAACAGCCTTGAAATCTTTTTCAGT
GACTATTGTGGAAAAGAAATAAGATTACTACATAAAATACATTACAACGG
AACTATTATAATGCtcgaaaacaaaacttttttaagaCTAGAACTCCCGT
GATGAATATAAAGAAAGATTGATTTACGACGTACAATTGAACTCCAAGGA
TTTTTTAGCGGACTTTTCAGTATTGGAAATGCTTGGTCGTTCAACCGTGG
TAATTTCAAAGTTAACAACAGACTGTTCAGCCGCGACGGAATTGGATTGA
TCGCCAGATCGTTCAGTCCTGATGATTCTGGGATTGGCGTCGGACCTTTT
GGGTGTAGAACCTGTGTAAATAAGAAAAGGGTTTCCAACGTACGTAGCTT
TATGAAATGGTGTAgataaatattaaaattattcTGACTatggaaaaagt
tgaaattaaaTGATATTGTTACCAGATATTGGTGGAGCGACCATTTTCTC
AATAACGGATTCTTCGTTTTGTGTGTTAGTTTCTAAACGAACCAATAAAG
CTAATAGCATTAGATTTTGTGAAGGCTAACTTTCGCAGATTTCGTGAATT
CATGCtgaatttttaatttgaaaaggCGTCATTTCTAAAATCATataaac
aaatttctaaaattgtCCTTATTGACGTTAAAGAAACGTTAGAAAGTATA
TATAAACAACTAGTATGTAGATTTTGGCAGTATAAATCCAcgaaatcgtg
aaaatattatcCCAAAAAGCGTCATCTGCAAAATCTAGCCCTTGCAAAAT
TAAATCATTTTAAAGTTATGTAAACTGCCTTTAATAATCACGTTTCACGT
TTCATCATATTCCACTCAAAATTCAATTAGTAGCACTAGAAATTAGCGTG
AAAATTAAGTAGTATCCTACCTAAAGTTGTGTTCTTCTCgacatgttttt
caaaaatctccaaattagTTTGGTTGAGAATGTCTAAAAATATGATgtat
tttttaaacataatacaatacaccttttcataaataacgtcacgaacatc
acttgcctcgttttgaaattattgccatggtgattaactcccagcggatt
ttattacagctactttctatttataaaaaaatcattcaaggGTTATCATC
ATCAAGGGAtatgatcaccatggaaatttGTGTGAATACGAGGCAattga
tgttcgtgacgtaatttatgaaaaggtctattcgtgTAAATTTTCATAGT
CATTGTACATTTTTTAACTAAATGATGATTCTCGTGTAATATTTAATAGT
TCCTTCGAATTTGTTGAAGAATAAGAAACCAAAACTAGACACTGTCTTAA
ATTTAACTAGGACTTTATAATGAGTGCTAATTTagagaaattgaaaaact
ttagatatattttaggcgtacaaactttcgcgagcataaacttttacGAA
TCAAG Run BLAST on NCBI transcript from alignment at scaffold_160:50088..54532+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049531 ID=TCONS_00049531|Name=TCONS_00049531|organism=Clytia hemisphaerica|type=transcript|length=4445bp|location=Sequence derived from alignment at scaffold_160:50088..54532+ (Clytia hemisphaerica)
AATGAACTGAGATATTCAAAATATAAACTGATTAAGATACAAAATTGGGT
TAAGATACAAAATGGGGTTAAGATATAAAGGAGGGTTCAGATACAAAATG
GTTTGGATACAAAATaatacaaaataataaaaaaaatccaaaaactagAA
AATCAACGAACAGTTTTTAGGGTTTTCATCTGATGTTTGTGCGTTTCGAT
CCATTTATGAAACTTCGTCATGTCAAAATTGACGAGCATGCTTTcctttt
gatttgaaaagtaTTTATATTCTCGTCCAGGAGTTGATTGAAGTGCCTTT
TCGGCCACAATTTGTTTTACTAATTTAATGAGATCTCCGTCATCTCTTTT
CTTTGTATGTTTTCCTGAACGTTTTTTCAATTCGTTTTCATCGTCAAACT
TCTCTAGGAGCTCCTTATTGAAATGAAGTGCTTTTGCGTaccttgaaaca
aaataaataaattgtatAAAACCCAGGTTTATGTAAATTATTATTTCAAG
TCTTAGTTTTACTGAAATTGTTGGGATGGAATAGAAATAACTTGGGGCGA
AAAACATCTACATTAACCTATAACCTTAAAGTATCGTTTCAGATAAAAAG
AAATAATGAATTTATAATAGCTACCTTGTCATCACTTTTTCATCCATGGC
ATTTGGACCTAACTTTCTCTTGATGGTTTTCACCAGCCGGATGTAATGCT
CGCATTGCAAATCCAAAGGTATGTTGTGTCCTGAAAGTAAAAGTGATTGA
CATAAATATACAAATACTgctatattttttatattaatcTTCTTTCCATC
ATCCAACAAAGCAGACGATTGTTTAGTTTCCTTATCTTTTTCAGGTCATT
TGCAAAAATCGAAAGGATTCATTTTATGGACCGAAAACTTGTTTGTTGGA
AACAGAAGACACCTGCAAAAGGAACAGTCAGGTAGATTATATTACCTTTC
CCATTTTTGTTTCTACAAGTGCGGTTCCACATCAGGCTGTAAGCTTCTTT
CTCACTTAAAAGGCAATTAAGCTGCAAAATCAAATAAAACGCCTCCACGT
TATATTTTTTGCTATGTAGTCCATCTTTGAAGAAGTATGGGAACAGGAAC
TTCCAGCACCTTATCACTCTGTCTCCATCTCCTTCTTTCACTGCatcgga
aaaattttcccacagaGCTAAATACTCCATCAGTGCGATCTGATAATTCA
ACATGTCATCTTGGATCTGAAAGACAAGAAAATCCTAAGCTAAGGTCTCA
TACGTGTGAaccttaatttcaaaatttaaattaaatcattttttgatttt
aaaaaggaTTAGCCTTTAAAGATATCTTGACTTACGTTTTCTACTTGATG
TTCTTTCTGTAGATGTGTGCGAAGAGATTTTCCAATGAATTCGAAGAGTT
TGTCACACAAGTTGCACTTGAATTTCCCTTCTACACTAATGAATTCAACT
TGCTTCTTTGTAAGATAATTCTCGGCAGTTGACGAACGTAGAATGTAGTT
GTCAACAACCTCTGTGCAGATGCTCTCCAACTTTCTGTAGAAATAATAAG
AATAATCGTAATGATAATGATAATTTATCATCagtgaaacatttttttaa
atagaagATGTTTTGCGAAAATATTCTAATAATTAAATCTAACCTCCTTT
TTTCTTCTGGCGAAGCCAACTTTTCAAAGTAATCCACGTTAAAAGATTTG
GTCATTTCGTCGACGTCACTGATTTCGAGTATATCAAGGCCGGCTGCGAT
AACTCTAGCTTTGAATTCGACGTCAAGAAAGCTTCTCACAGCGGAATAAT
GCTTTTTGACTTCTGTTGCCACGTTTCTACGGTTGATGAAGGACTTATCA
GCCCCCAAGGTACATTTGTCCGGGAAGGAATTCTTGAAGAAATGATCCAT
GGCATACTAAAATATAATGTTATCGCAATCAATAGTAAAGATATTCATAT
TTCTGCTAGAATTAGTAGAAAACCGTAAGAGCCATTTAAAATACCCAAAT
CTATTCTTACCTGCAATATTTTCATGTCGAAATGAAAATCAGCCACTTCA
CAGTGCATTCCTTCGAATCTTTCTTTTGCGTCAAATGCGCCAGCTGATTG
AAACATTACATTTATACATCGCTCAATGGTTAGCTGATCTCCGACAATTG
CTTTTTCCGTAAATGTTATGTCGTCCCCTTTCCCCGAAGTTGACTGGTAT
TGTTGGAGATCTTCGAGAACCTTTCTACACCCTTCATTTGTATTTTCATT
CTCGTATATTATCCCCAAGAAAACCTGAAATTTACAGATATAAAAAAGTC
TAGTTTTAAATTTAAGATATATCTTGCAATGTCTGCTTCTCTAATCGTAA
CATCGTAAAAGACATGTATTCTTAGTTGCACACAATGCATACTTTTTACG
ATTTGGAGGATTTTTAACGTTTGAAATATCATGATCTGAAGCCCATTGCT
CGGggataatagacgatatcggatttagataaatgcaatgcattctggtt
tctagggactctcaaaggaattataatctatttaattgatctattataat
tcctttgagagtccctagaaaccagaatgcattgcatttatctaaatccg
atatcgtctattgtccCAGCCAGGATTTGAATTTGAAACGTGAATAACCT
TATAAATAATCTTGTGAATAATCTTAGACTTACAGTGTCactcttttttc
tcatttctttaGAATGATCGTGGCGGATGTGACGGATTACTTCAGACTGG
AATGGTTTCAAGCATTTTACGTGTTCAGTCAAGATTCTCGATATTAACAC
AATATAGTTCAGACGTTGTTTTACATGTTCGGCTGGAGAACAAAGAAACG
AACTGTTATCCAATTCGTCAATGGTGTATTTTGGGTGCGTTCCGCTTAAT
TCGTCAGGTGGGGTGACTCTATCAAAAACAGCAAGTTTCGCAGTATGGTG
TGTGCTGACGTTTTGGTTGTTCTCGTCCATGTCTGACACTTTATGGGTGG
TATCCAAATTGTCGATAACAGCCTTGAAATCTTTTTCAGTGACTATTGTG
GAAAAGAAATAAGATTACTACATAAAATACATTACAACGGAACTATTATA
ATGCtcgaaaacaaaacttttttaagaCTAGAACTCCCGTGATGAATATA
AAGAAAGATTGATTTACGACGTACAATTGAACTCCAAGGATTTTTTAGCG
GACTTTTCAGTATTGGAAATGCTTGGTCGTTCAACCGTGGTAATTTCAAA
GTTAACAACAGACTGTTCAGCCGCGACGGAATTGGATTGATCGCCAGATC
GTTCAGTCCTGATGATTCTGGGATTGGCGTCGGACCTTTTGGGTGTAGAA
CCTGTGTAAATAAGAAAAGGGTTTCCAACGTACGTAGCTTTATGAAATGG
TGTAgataaatattaaaattattcTGACTatggaaaaagttgaaattaaa
TGATATTGTTACCAGATATTGGTGGAGCGACCATTTTCTCAATAACGGAT
TCTTCGTTTTGTGTGTTAGTTTCTAAACGAACCAATAAAGCTAATAGCAT
TAGATTTTGTGAAGGCTAACTTTCGCAGATTTCGTGAATTCATGCtgaat
ttttaatttgaaaaggCGTCATTTCTAAAATCATataaacaaatttctaa
aattgtCCTTATTGACGTTAAAGAAACGTTAGAAAGTATATATAAACAAC
TAGTATGTAGATTTTGGCAGTATAAATCCAcgaaatcgtgaaaatattat
cCCAAAAAGCGTCATCTGCAAAATCTAGCCCTTGCAAAATTAAATCATTT
TAAAGTTATGTAAACTGCCTTTAATAATCACGTTTCACGTTTCATCATAT
TCCACTCAAAATTCAATTAGTAGCACTAGAAATTAGCGTGAAAATTAAGT
AGTATCCTACCTAAAGTTGTGTTCTTCTCgacatgtttttcaaaaatctc
caaattagTTTGGTTGAGAATGTCTAAAAATATGATgtattttttaaaca
taatacaatacaccttttcataaataacgtcacgaacatcacttgcctcg
ttttgaaattattgccatggtgattaactcccagcggattttattacagc
tactttctatttataaaaaaatcattcaaggGTTATCATCATCAAGGGAt
atgatcaccatggaaatttGTGTGAATACGAGGCAattgatgttcgtgac
gtaatttatgaaaaggtctattcgtgTAAATTTTCATAGTCATTGTACAT
TTTTTAACTAAATGATGATTCTCGTGTAATATTTAATAGTTCCTTCGAAT
TTGTTGAAGAATAAGAAACCAAAACTAGACACTGTCTTAAATTTAACTAG
GACTTTATAATGAGTGCTAATTTagagaaattgaaaaactttagatatat
tttaggcgtacaaactttcgcgagcataaacttttacGAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049531-exon-scaffold_160-1491911889:50088..50524 | TCONS_00049531-exon-scaffold_160-1491911889:50088..50524 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1510915933:50088..50524 | TCONS_00049531-exon-scaffold_160-1510915933:50088..50524 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1575043694:50088..50524 | TCONS_00049531-exon-scaffold_160-1575043694:50088..50524 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1491911889:50708..50805 | TCONS_00049531-exon-scaffold_160-1491911889:50708..50805 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1510915933:50708..50805 | TCONS_00049531-exon-scaffold_160-1510915933:50708..50805 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1575043694:50708..50805 | TCONS_00049531-exon-scaffold_160-1575043694:50708..50805 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1491911889:50932..51018 | TCONS_00049531-exon-scaffold_160-1491911889:50932..51018 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1510915933:50932..51018 | TCONS_00049531-exon-scaffold_160-1510915933:50932..51018 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1575043694:50932..51018 | TCONS_00049531-exon-scaffold_160-1575043694:50932..51018 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1491911889:52800..54532 | TCONS_00049531-exon-scaffold_160-1491911889:52800..54532 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1510915933:52800..54532 | TCONS_00049531-exon-scaffold_160-1510915933:52800..54532 | Clytia hemisphaerica | exon |
| TCONS_00049531-exon-scaffold_160-1575043694:52800..54532 | TCONS_00049531-exon-scaffold_160-1575043694:52800..54532 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:50088..54532 + |
Blast
The following BLAST results are available for this feature:
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