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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049530 ID=TCONS_00049530|Name=TCONS_00049530|organism=Clytia hemisphaerica|type=transcript|length=2926bp
GTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACTTTGTTGAAGA
ATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCCCCAAGTTAAT
GTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCAGTGCCCCAAC
AGGTTTGATTTGACAGGCAGTCATTATAGTAGTTTCATCTCTCCCAAAAA
CTCTACTTTATTTGAGACAACTTCTCAAGATTGACCATCTAGGCTACTAG
GCAGGCATCAtacttaaaaatggtttttgaATTATACCCATCAAAACAGC
AGGGTAAAGATTCCAATTTTATCAAACGTACGTGTGTTTATActataata
aaattaaaaaaattaagaaagctTAAACAAATTTAACGTAGTCataaatt
aaaaatcagttGTGTTATTGTCATTTAGGCTATGGAAAGTCAGTTGTTTT
CCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATC
CAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATC
AAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGT
AACTGATGAGTGTTATGAAGATATCAAAGCTGGTACATATTCATTGGTGT
ATGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCT
GATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACA
TGTAATGGTTGAATGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCA
GAGAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAA
GCAAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCAC
CATCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATAT
ATCACCCTAACAAAAATAATGTTAGGTAATAATTATTTAACTTTGGTATA
TACAAAATATTCAACTAATTTTCTGATCTGACATTTTGTGGTTACAGTAT
AGTAAAATTATAGTTATGATGGATGATAATAGAtatttgattataaaaaa
ttaGTAATAGCTCTCTTAGTAGATAATGTTATTAGAAGAAATTCCTAAAC
TTTGTCTGTCAGGTTTCAaatcaaatctttaaaaagaaatttttttattc
acaaGGATTTTTAGACTTCAAGAAAAAGTACAATGATAAGGCTATCAGTA
TCACATCATTTTTTGTCAATAGATTCACAGTCGAGCAGATTTCAATGGGC
AAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAAGA
AATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCAACA
CAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCGGA
GTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTTGT
TGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCTTG
CCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACATCA
GCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCATTT
TGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGTTG
GTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTTTG
GCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTTAA
GTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTCTC
TTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTAAG
GAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAAGC
TCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGAAC
TTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaagaaa
aatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAGTA
CCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatccaaG
ATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAGTC
TTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAATGGA
ACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTTTA
TGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGCTAT
CTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGAAGA
TGAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATCaggg
ggttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTGCCCA
AATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATACAAT
GTTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAACATTC
TAAAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAACATC
AATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACACCTTG
TAGTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGTAATC
AAAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGTTGTG
TtaattcaagttaaatctttggCTACCCtcctttttagaccaacccattA
TCAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATTCAAT
ATTGTCATTATTGGAAATAGAGAGAT Run BLAST on NCBI transcript from alignment at scaffold_160:45521..49244+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049530 ID=TCONS_00049530|Name=TCONS_00049530|organism=Clytia hemisphaerica|type=transcript|length=3724bp|location=Sequence derived from alignment at scaffold_160:45521..49244+ (Clytia hemisphaerica)
GTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACTTTGTTGAAGA
ATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCCCCAAGTTAAT
GTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCAGTGCCCCAAC
AGGTTTGATTTGACAGGCAGTCATTATAGTAGTTTCATCTCTCCCAAAAA
CTCTACTTTATTTGAGACAACTTCTCAAGATTGACCATCTAGGCTACTAG
GCAGGCATCAtacttaaaaatggtttttgaATTATACCCATCAAAACAGC
AGGGTAAAGATTCCAATTTTATCAAACGTACGTGTGTTTATActataata
aaattaaaaaaattaagaaagctTAAACAAATTTAACGTAGTCataaatt
aaaaatcagttGTGTTATTGTCATTTAGGCTATGGAAAGTCAGTTGTTTT
CCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATC
CAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATC
AAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGT
AACTGATGAGTGTTATGAAGGTATGTCTATATTATTTAGATTTAGAATTA
TTTTACTTAAGATAAGTCTGGTTGTTAGTATAGACTCTAGATTCATCAAC
AAAGAAGTACTCTTCTCTTAACTTAGGGGCCTACTGTAATAAATTAATAC
TTCGTCCTAAATTGATATTCATATAAGCCCTACCGTGaacatcaaatgac
tgaccaatcaaagcagaagaatttcaaaacaaatgaactacgcagctcca
ttcacagctctactctacaatttttgttttgattttatatactttgtatt
ttaatgaccgaccaggtcattcatttgagggctatgcatgttatccTCCA
CTGATgaaagttacccgatctcacagtaACAATTAGCATGGAGTAACATG
GCTTTACTTTCAGGCGACTTCAGATAAATAACCCCTCGTTTCCTTAAACA
TTTTGGCAAATAACCCTCAATAACTGTCATTTGTTTATTACACACCAAAG
AGTAGAGCAATAGCAATGTACTATTAAGTAAGCTGTCAGATAGTACAGCA
gtttcattttataatatctctTAAAAAGTTTTATCTGAATTCAATGTTGT
TCCCTCCAAGATATCAAAGCTGGTACATATTCATTGGTGTATGCCTGTCC
AGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGATTCTGAGT
TTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATGTAATGGTT
GAATGGTTTGTAGATTATTTTAATCTTTCGGAAAGGCTTTACCATGTTTT
TTTCATGACATTAATGAACCACATTTTTTTGTCTTCTAAAATTTTACAAA
CCTCCTGCTCTCTAACACTactaattttctatttttgagtGTCTCTTCAT
ATATTATATGTCAACTAACCAGTCGTTACACGATTTCACTTAAAACATAT
TTAACAACCATAGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCAGA
GAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAAGC
AAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCACCA
TCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATATAT
CACCCTAACAAAAATAATGTTAGGTAATAATTATTTAACTTTGGTATATA
CAAAATATTCAACTAATTTTCTGATCTGACATTTTGTGGTTACAGTATAG
TAAAATTATAGTTATGATGGATGATAATAGAtatttgattataaaaaatt
aGTAATAGCTCTCTTAGTAGATAATGTTATTAGAAGAAATTCCTAAACTT
TGTCTGTCAGGTTTCAaatcaaatctttaaaaagaaatttttttattcac
aaGGATTTTTAGACTTCAAGAAAAAGTACAATGATAAGGCTATCAGTATC
ACATCATTTTTTGTCAATAGATTCACAGTCGAGCAGATTTCAATGGGCAA
AGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAAGAAA
TAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCAACACA
AGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCGGAGT
TGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTTGTTG
AAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCTTGCC
CAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACATCAGC
TTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCATTTTG
GACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGTTGGT
AGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTTTGGC
AACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTTAAGT
GTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTCTCTT
TCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTAAGGA
ACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAAGCTC
CTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGAACTT
AGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaagaaaaa
tctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAGTACC
ATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatccaaGAT
CTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAGTCTT
AAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAATGGAAC
AGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTTTATG
AATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGCTATCT
TCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGAAGATG
AAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATCaggggg
ttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTGCCCAAA
TATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATACAATGT
TAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAACATTCTA
AAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAACATCAA
TGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACACCTTGTA
GTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGTAATCAA
AAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGTTGTGTt
aattcaagttaaatctttggCTACCCtcctttttagaccaacccattATC
AGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATTCAATAT
TGTCATTATTGGAAATAGAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049530-exon-scaffold_160-1491911889:45521..46140 | TCONS_00049530-exon-scaffold_160-1491911889:45521..46140 | Clytia hemisphaerica | exon |
| TCONS_00049530-exon-scaffold_160-1510915933:45521..46140 | TCONS_00049530-exon-scaffold_160-1510915933:45521..46140 | Clytia hemisphaerica | exon |
| TCONS_00049530-exon-scaffold_160-1575043694:45521..46140 | TCONS_00049530-exon-scaffold_160-1575043694:45521..46140 | Clytia hemisphaerica | exon |
| TCONS_00049530-exon-scaffold_160-1491911889:46731..46875 | TCONS_00049530-exon-scaffold_160-1491911889:46731..46875 | Clytia hemisphaerica | exon |
| TCONS_00049530-exon-scaffold_160-1510915933:46731..46875 | TCONS_00049530-exon-scaffold_160-1510915933:46731..46875 | Clytia hemisphaerica | exon |
| TCONS_00049530-exon-scaffold_160-1575043694:46731..46875 | TCONS_00049530-exon-scaffold_160-1575043694:46731..46875 | Clytia hemisphaerica | exon |
| TCONS_00049530-exon-scaffold_160-1491911889:47084..49244 | TCONS_00049530-exon-scaffold_160-1491911889:47084..49244 | Clytia hemisphaerica | exon |
| TCONS_00049530-exon-scaffold_160-1510915933:47084..49244 | TCONS_00049530-exon-scaffold_160-1510915933:47084..49244 | Clytia hemisphaerica | exon |
| TCONS_00049530-exon-scaffold_160-1575043694:47084..49244 | TCONS_00049530-exon-scaffold_160-1575043694:47084..49244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:45521..49244 + |
Blast
The following BLAST results are available for this feature:
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