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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049517 ID=TCONS_00049517|Name=TCONS_00049517|organism=Clytia hemisphaerica|type=transcript|length=829bp
ggcaaaattgatttttaagggattttttatcaaaagtttctTTGGGCAGG
TTCTGCACTGATTTGCATCCATTTGACTGCACCATTCATGAGTATGCTTC
TTGATCATAAGGTGACACCTAGACAACTTTTAGTCATCTTACTACAATTG
TATCAAGATTTGTGCAGTTACCCATTATCAATGATTCACATGACACGCTG
TGCTCTACCATCAATGCAAACCTTTTTTCTTGATCCTCTTAAAGATGCAA
CTTCACCATATGGAGTCAACGTATGTCTCAAATTGAAAGGGTTTATTTCA
GAATGTGACCAGACTTTGATGGAAAGCTATCTAAAGCAGATCAGTCAAGG
TCTTGGTTGTATCTTGAAAAGGCAGCGTGGAAATCAATATGGTTTTGGTG
ATGATGGCAACAGTGACCTACACATTCTGAAAAATATGGATGAAAAGATG
CTGGATGATCCAGATGCCACGAACACAAAATCAATCGAGAATTATTTTGG
AAACCTTGATCGAGAGATTAAGAAGGCTGGTTCTCAAGGGTTCAACAAGT
GCTGTGATGATCTCACAATAAAAATATGCAAAAGATGTCATAGATGGCAA
GCATGGTTGGACAACAAAGGCGAACAGAAAGATAGCCCGTACATTGGAGa
ttaaacaacaaaaatttgatcaaaaacaaaaagaattgatAGCCAGCAAT
GTTGATGAAGAAGATGCAGCCAAGCTAGCAACCAGCAAAAAAGTTATCAG
GTGTGTATCTGCTTGCAAAAAATCCCACCAAGGGCCAATCACTACAATTG
AAGAGCTCGACACCCTGGTTCAAGACTGG Run BLAST on NCBI protein sequence of TCONS_00049517-protein >TCONS_00049517-protein ID=TCONS_00049517-protein|Name=TCONS_00049517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MSMLLDHKVTPRQLLVILLQLYQDLCSYPLSMIHMTRCALPSMQTFFLDP
LKDATSPYGVNVCLKLKGFISECDQTLMESYLKQISQGLGCILKRQRGNQ
YGFGDDGNSDLHILKNMDEKMLDDPDATNTKSIENYFGNLDREIKKAGSQ
GFNKCCDDLTIKICKRCHRWQAWLDNKGEQKDSPYIGD Run BLAST on NCBI transcript from alignment at scaffold_16:119763..120591 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049517 ID=TCONS_00049517|Name=TCONS_00049517|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at scaffold_16:119763..120591 (Clytia hemisphaerica)
CCAGTCTTGAACCAGGGTGTCGAGCTCTTCAATTGTAGTGATTGGCCCTT
GGTGGGATTTTTTGCAAGCAGATACACACCTGATAACTTTTTTGCTGGTT
GCTAGCTTGGCTGCATCTTCTTCATCAACATTGCTGGCTatcaattcttt
ttgtttttgatcaaatttttgttgtttaatCTCCAATGTACGGGCTATCT
TTCTGTTCGCCTTTGTTGTCCAACCATGCTTGCCATCTATGACATCTTTT
GCATATTTTTATTGTGAGATCATCACAGCACTTGTTGAACCCTTGAGAAC
CAGCCTTCTTAATCTCTCGATCAAGGTTTCCAAAATAATTCTCGATTGAT
TTTGTGTTCGTGGCATCTGGATCATCCAGCATCTTTTCATCCATATTTTT
CAGAATGTGTAGGTCACTGTTGCCATCATCACCAAAACCATATTGATTTC
CACGCTGCCTTTTCAAGATACAACCAAGACCTTGACTGATCTGCTTTAGA
TAGCTTTCCATCAAAGTCTGGTCACATTCTGAAATAAACCCTTTCAATTT
GAGACATACGTTGACTCCATATGGTGAAGTTGCATCTTTAAGAGGATCAA
GAAAAAAGGTTTGCATTGATGGTAGAGCACAGCGTGTCATGTGAATCATT
GATAATGGGTAACTGCACAAATCTTGATACAATTGTAGTAAGATGACTAA
AAGTTGTCTAGGTGTCACCTTATGATCAAGAAGCATACTCATGAATGGTG
CAGTCAAATGGATGCAAATCAGTGCAGAACCTGCCCAAagaaacttttga
taaaaaatcccttaaaaatcaattttgcc Coding sequence (CDS) from alignment at scaffold_16:119763..120591 >TCONS_00049517 ID=TCONS_00049517|Name=TCONS_00049517|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_16:119763..120591 (Clytia hemisphaerica)
ttaatCTCCAATGTACGGGCTATCTTTCTGTTCGCCTTTGTTGTCCAACC
ATGCTTGCCATCTATGACATCTTTTGCATATTTTTATTGTGAGATCATCA
CAGCACTTGTTGAACCCTTGAGAACCAGCCTTCTTAATCTCTCGATCAAG
GTTTCCAAAATAATTCTCGATTGATTTTGTGTTCGTGGCATCTGGATCAT
CCAGCATCTTTTCATCCATATTTTTCAGAATGTGTAGGTCACTGTTGCCA
TCATCACCAAAACCATATTGATTTCCACGCTGCCTTTTCAAGATACAACC
AAGACCTTGACTGATCTGCTTTAGATAGCTTTCCATCAAAGTCTGGTCAC
ATTCTGAAATAAACCCTTTCAATTTGAGACATACGTTGACTCCATATGGT
GAAGTTGCATCTTTAAGAGGATCAAGAAAAAAGGTTTGCATTGATGGTAG
AGCACAGCGTGTCATGTGAATCATTGATAATGGGTAACTGCACAAATCTT
GATACAATTGTAGTAAGATGACTAAAAGTTGTCTAGGTGTCACCTTATGA
TCAAGAAGCATACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049517-exon-scaffold_16-1491911889:119763..120591 | TCONS_00049517-exon-scaffold_16-1491911889:119763..120591 | Clytia hemisphaerica | exon |
| TCONS_00049517-exon-scaffold_16-1510915933:119763..120591 | TCONS_00049517-exon-scaffold_16-1510915933:119763..120591 | Clytia hemisphaerica | exon |
| TCONS_00049517-exon-scaffold_16-1575043694:119763..120591 | TCONS_00049517-exon-scaffold_16-1575043694:119763..120591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:119763..120591 . |
Blast
The following BLAST results are available for this feature:
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