TCONS_00049515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049515
Unique NameTCONS_00049515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049515 ID=TCONS_00049515|Name=TCONS_00049515|organism=Clytia hemisphaerica|type=transcript|length=528bp
ctcacatatcgatttttcCCACGCTTAACGTCATTCCAATGCTTTAGGGT
AGGTGGGTTAGATCGAGTGACGCTAAGAAAATCTAGAGATATCGTTTTTT
GAGGCCCAAGAGATgatcaaatttccagaaaactaTAACTCTTTTTTTCA
CGGCATCAAGAATAAACCGGTATAGTAAAAAAATACCGGAGACACTCATT
ATGTTAAAAAAGTTTGGGGCTTTTTTTTCCCGTGTCATAACTTATGCGGG
TCTGGGAACCAATCTGTGTAAAAGTCAGAAACCACTACtcgaaaaacaag
caaaatgtaCAAGGCAGAAGGAAGAAGAAACGTCTCTGGCAGTGGAACAT
CAATACCAGAAGTGAgaatggaaaaaaggttttcatCGATTTTCGGTATA
TTTTATAATATGACGCTAaggggtcagtcacaaatcgattctaggttaga
agaacgtcaattgacgttttaaaagctgacccacccacccacacccaaaa
acgtcaaacaccttgatatcccgaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_16:105165..105692

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049515 ID=TCONS_00049515|Name=TCONS_00049515|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at scaffold_16:105165..105692 (Clytia hemisphaerica)
attttcgggatatcaaggtgtttgacgtttttgggtgtgggtgggtgggt
cagcttttaaaacgtcaattgacgttcttctaacctagaatcgatttgtg
actgacccctTAGCGTCATATTATAAAATATACCGAAAATCGatgaaaac
cttttttccattcTCACTTCTGGTATTGATGTTCCACTGCCAGAGACGTT
TCTTCTTCCTTCTGCCTTGtacattttgcttgtttttcgaGTAGTGGTTT
CTGACTTTTACACAGATTGGTTCCCAGACCCGCATAAGTTATGACACGGG
AAAAAAAAGCCCCAAACTTTTTTAACATAATGAGTGTCTCCGGTATTTTT
TTACTATACCGGTTTATTCTTGATGCCGTGAAAAAAAGAGTTAtagtttt
ctggaaatttgatcATCTCTTGGGCCTCAAAAAACGATATCTCTAGATTT
TCTTAGCGTCACTCGATCTAACCCACCTACCCTAAAGCATTGGAATGACG
TTAAGCGTGGgaaaaatcgatatgtgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031410XLOC_031410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049515-exon-scaffold_16-1491911889:105165..105692TCONS_00049515-exon-scaffold_16-1491911889:105165..105692Clytia hemisphaericaexon
TCONS_00049515-exon-scaffold_16-1510915933:105165..105692TCONS_00049515-exon-scaffold_16-1510915933:105165..105692Clytia hemisphaericaexon
TCONS_00049515-exon-scaffold_16-1575043694:105165..105692TCONS_00049515-exon-scaffold_16-1575043694:105165..105692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:105165..105692 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1483	1.42626	2.39435	2.63048	1.54935	1.45994	0.239269	0.901557	0.301146	0.699381	0.24371	0.734793	0.364338	0.380995	0.446506	0.523066	0.873496	0.987241	0.38221	0.688794	0.654518	2.86884	0	0.544835	0.603999	1.64977	0.688927	1.03756	0.483213	0.666467
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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