TCONS_00049488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049488
Unique NameTCONS_00049488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049488 ID=TCONS_00049488|Name=TCONS_00049488|organism=Clytia hemisphaerica|type=transcript|length=1540bp
AAGTAATGTAAAACCTTAAAATCCGTACTAGTTCATTGAACACTCAACGC
TCActataaaaaaaatctcaaattggaaaagtgaaaattttaaataattt
acaaaagaagtcttagaaaaatttaaaatttcaaaagttcgTTATGGAGT
TGCATCTTTTGGTATCGTTTGTCTTGGTTTTAATTTACCCAGTCGAATCA
AGGAGAAGTTTTCGTTACGGGAAGCTGTTAAAGAAACAATATGACGGAAT
ACTTGAAGATATGAAGCAACACACCGACTTGGTCCGTCTGCAATCAATAA
CAAAGCGAGGAGCTTTACCACAGGGAAGTCTCAGATCAATCTGTCAAAGT
TTTTGTCTAAGCAATGATTGTTATGGACCACCGTGTGATGCGTTCGTTTA
TGGCCGCGAGGAGAGGAGATCTATCAAAAGGGGAGCCCTACCTCAGGGTA
GATTAAGGTCTGTTTGCCGACAAGCATGTAGAAGCGAAAATTGCTTAGGT
CCCCCTTGCGATATGTTTGGTTATGGACGGGAGACTGAGAGAGAAATTAA
AAGGACATTTGTAGGTATGTCCCAAGGAATATCGATTAGGAAACTATGTC
GACAAAAGTGTGCAAATAACAATTGCTTTGGACCACCTTGCAACGTCTTT
GGATACGGTCAGGAAGTAAAAAGACTTGTAAATAGCGGCAAAGAAAGTGG
AATCGGCAAACGGCGAATGGAAACTATTTGGAACAGAAGCACTTTTGCTC
AAGGGATCGTCGATTTGAGATCAATTTGTAGAGAAGCTTGTCGTAACAGG
GGCTGCTATGGTCCTCCTTGCAATAGATTCGTTGGCAAAAGAAGCGCCGG
TGTTTACGGAGACAATAATCAAGTTGAAAAGCGAGTTTCATTCCCAGGTT
CAAGTCCTTTGAAAGTCCATTGTAGACTATGTAATCTTAAGAATGTTGAG
TGTCTTCCGTCTGGTCCGTGCAGAAAATTCAGAAACCGTAAATCTGCAGA
ATAAGTCACGATTCGTTGATTCTTAGGGTAAAACCTTTAGGTTTATTTCA
CGGAGAACCGTTGCAGTGACACAGCGCTCTTATAAAGTTTACCATCTAAC
GATAGATCTTCTAGCATGAACATCGTTTTAACATTCAGAAATTCTTAATG
GATTTTTTATCTATATTAAGAGACAAATGAATGAACGTAGTCAATGATCA
ATAATGTCAATGACTCAGGTTGACCATTAAACTGGCGTTTACAGAGACAA
AACTTTTATTAAAGTTTCCGGATGTGGTCTCTGAGAGGCTATTAtgactt
ttagaaaaaaagtaaattttcaaataaacgaatttctttcaaatccaGGT
AATTTTTAACATGAGATATTTATAGTAGTATTATGTCGTAAAATTAAatg
tatgaaattttgaattttttgcaaaataaatgtAAATCTGATTCTATCag
aatgaaaataagaaaatttatgAGAGGTTCCCGACTGTGTGGGGGCCCAT
TTaagaatttgaatatatttctccattcatttattaattt
Run BLAST on NCBI

protein sequence of TCONS_00049488-protein

>TCONS_00049488-protein ID=TCONS_00049488-protein|Name=TCONS_00049488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MELHLLVSFVLVLIYPVESRRSFRYGKLLKKQYDGILEDMKQHTDLVRLQ
SITKRGALPQGSLRSICQSFCLSNDCYGPPCDAFVYGREERRSIKRGALP
QGRLRSVCRQACRSENCLGPPCDMFGYGRETEREIKRTFVGMSQGISIRK
LCRQKCANNNCFGPPCNVFGYGQEVKRLVNSGKESGIGKRRMETIWNRST
FAQGIVDLRSICREACRNRGCYGPPCNRFVGKRSAGVYGDNNQVEKRVSF
PGSSPLKVHCRLCNLKNVECLPSGPCRKFRNRKSAE
Run BLAST on NCBI

transcript from alignment at scaffold_16:17295..19667-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049488 ID=TCONS_00049488|Name=TCONS_00049488|organism=Clytia hemisphaerica|type=transcript|length=2373bp|location=Sequence derived from alignment at scaffold_16:17295..19667- (Clytia hemisphaerica)
AAGTAATGTAAAACCTTAAAATCCGTACTAGTTCATTGAACACTCAACGC
TCACTATAAAAAAAATCTCAAATTGGAAAAGTGAAAATTTTAAATAATTT
ACAAAAGAAGTCTTAGAAAAATTTAAAATTTCAAAAGTTCGTTATGGAGT
TGCATCTTTTGGTATCGTTTGTCTTGGTTTTAATTTACCCAGTCGAATCA
AGGAGAAGTTTTCGTTACGGGAAGGTATGCTACTTAAATACTCCCATACT
CCTCCCAAAGAGTGGAAATCAGATTCTAAAAATTTTATTCTTGCCTTCAT
GTGGAAACCAAACTAGTATGATTAGACTAAATACTTTTGGAGTGGTTTCC
GCATCGTAGCAGAAGATAATCCTTGCATCACGAGTACTAAAATAGATAGT
TTCTCCGAGTTATTATTTTTGCATTTTTGTGGGTTTTTTAGAAGATTATT
ATTCAATAAAGTCACCTGCTCCTCATCCTAAACGCATCTCCGATCTACAA
TCAGTTCCAAAATACTTGGCACAAAAAGGAAATTTCCCATGAAACAGGCT
ATTTTACCATTTCTCGNATTCAATAAAGGCACCTGCTCCTCGTCCTAAAC
GCATCTCCGATCTACAATCAGTGCCATAACATATTGCCAATTTTGGCTAT
TTTACCATTTCTCGAAAATTGAAGTTCGTGCGAGAATGTTAATTTCGGGC
CGTCAACTTAATTTCATCGAATATTTCGATCTGGGAGGGATTTATTGGTT
TCTAGGCTATATTTAAAGCCCTACCGGACCATTTTTGTACTTTTTGCAGA
GTTAAAACTCTACCTTTGCAACCTAATATGGAGCACTTACAAATCGTTTG
TGGTTATAAAATTTCATGGGAAATTTCCTTTTTGTGCCAAGTATTTTGGA
ACTGATTGTAAATGCTTTGAGTAAATTTAAGTCGGAGATGCGTGTAGGAT
GATGGTATGGGTCGCAACGTAGTATCGATAGTAGGGAGCATAAAAATAAA
ACAACTCTCTTAACACTTATTGAACAGCTAGAATCACAATCTTCATACCT
CTTTCAGCTGTTAAAGAAACAATATGACGGAATACTTGAAGATATGAAGC
AACACACCGACTTGGTCCGTCTGCAATCAATAACAAAGCGAGGAGCTTTA
CCACAGGGAAGTCTCAGATCAATCTGTCAAAGTTTTTGTCTAAGCAATGA
TTGTTATGGACCACCGTGTGATGCGTTCGTTTATGGCCGCGAGGAGAGGA
GATCTATCAAAAGGGGAGCCCTACCTCAGGGTAGATTAAGGTCTGTTTGC
CGACAAGCATGTAGAAGCGAAAATTGCTTAGGTCCCCCTTGCGATATGTT
TGGTTATGGACGGGAGACTGAGAGAGAAATTAAAAGGACATTTGTAGGTA
TGTCCCAAGGAATATCGATTAGGAAACTATGTCGACAAAAGTGTGCAAAT
AACAATTGCTTTGGACCACCTTGCAACGTCTTTGGATACGGTCAGGAAGT
AAAAAGACTTGTAAATAGCGGCAAAGAAAGTGGAATCGGCAAACGGCGAA
TGGAAACTATTTGGAACAGAAGCACTTTTGCTCAAGGGATCGTCGATTTG
AGATCAATTTGTAGAGAAGCTTGTCGTAACAGGGGCTGCTATGGTCCTCC
TTGCAATAGATTCGTTGGCAAAAGAAGCGCCGGTGTTTACGGAGACAATA
ATCAAGTTGAAAAGCGAGTTTCATTCCCAGGTTCAAGTCCTTTGAAAGTC
CATTGTAGACTATGTAATCTTAAGAATGTTGAGTGTCTTCCGTCTGGTCC
GTGCAGAAAATTCAGAAACCGTAAATCTGCAGAATAAGTCACGATTCGTT
GATTCTTAGGGTAAAACCTTTAGGTTTATTTCACGGAGAACCGTTGCAGT
GACACAGCGCTCTTATAAAGTTTACCATCTAACGATAGATCTTCTAGCAT
GAACATCGTTTTAACATTCAGAAATTCTTAATGGATTTTTTATCTATATT
AAGAGACAAATGAATGAACGTAGTCAATGATCAATAATGTCAATGACTCA
GGTTGACCATTAAACTGGCGTTTACAGAGACAAAACTTTTATTAAAGTTT
CCGGATGTGGTCTCTGAGAGGCTATTATGACTTTTAGAAAAAAAGTAAAT
TTTCAAATAAACGAATTTCTTTCAAATCCAGGTAATTTTTAACATGAGAT
ATTTATAGTAGTATTATGTCGTAAAATTAAATGTATGAAATTTTGAATTT
TTTGCAAAATAAATGTAAATCTGATTCTATCAGAATGAAAATAAGAAAAT
TTATGAGAGGTTCCCGACTGTGTGGGGGCCCATTTAAGAATTTGAATATA
TTTCTCCATTCATTTATTAATTT

Coding sequence (CDS) from alignment at scaffold_16:17295..19667-

>TCONS_00049488 ID=TCONS_00049488|Name=TCONS_00049488|organism=Clytia hemisphaerica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_16:17295..19667- (Clytia hemisphaerica)
CTGTTAAAGAAACAATATGACGGAATACTTGAAGATATGAAGCAACACAC
CGACTTGGTCCGTCTGCAATCAATAACAAAGCGAGGAGCTTTACCACAGG
GAAGTCTCAGATCAATCTGTCAAAGTTTTTGTCTAAGCAATGATTGTTAT
GGACCACCGTGTGATGCGTTCGTTTATGGCCGCGAGGAGAGGAGATCTAT
CAAAAGGGGAGCCCTACCTCAGGGTAGATTAAGGTCTGTTTGCCGACAAG
CATGTAGAAGCGAAAATTGCTTAGGTCCCCCTTGCGATATGTTTGGTTAT
GGACGGGAGACTGAGAGAGAAATTAAAAGGACATTTGTAGGTATGTCCCA
AGGAATATCGATTAGGAAACTATGTCGACAAAAGTGTGCAAATAACAATT
GCTTTGGACCACCTTGCAACGTCTTTGGATACGGTCAGGAAGTAAAAAGA
CTTGTAAATAGCGGCAAAGAAAGTGGAATCGGCAAACGGCGAATGGAAAC
TATTTGGAACAGAAGCACTTTTGCTCAAGGGATCGTCGATTTGAGATCAA
TTTGTAGAGAAGCTTGTCGTAACAGGGGCTGCTATGGTCCTCCTTGCAAT
AGATTCGTTGGCAAAAGAAGCGCCGGTGTTTACGGAGACAATAATCAAGT
TGAAAAGCGAGTTTCATTCCCAGGTTCAAGTCCTTTGAAAGTCCATTGTA
GACTATGTAATCTTAAGAATGTTGAGTGTCTTCCGTCTGGTCCGTGCAGA
AAATTCAGAAACCGTAAATCTGCAGAATAAATGGAGTTGCATCTTTTGGT
ATCGTTTGTCTTGGTTTTAATTTACCCAGTCGAATCAAGGAGAAGTTTTC
GTTACGGGAAGCTGTTAAAGAAACAATATGACGGAATACTTGAAGATATG
AAGCAACACACCGACTTGGTCCGTCTGCAATCAATAACAAAGCGAGGAGC
TTTACCACAGGGAAGTCTCAGATCAATCTGTCAAAGTTTTTGTCTAAGCA
ATGATTGTTATGGACCACCGTGTGATGCGTTCGTTTATGGCCGCGAGGAG
AGGAGATCTATCAAAAGGGGAGCCCTACCTCAGGGTAGATTAAGGTCTGT
TTGCCGACAAGCATGTAGAAGCGAAAATTGCTTAGGTCCCCCTTGCGATA
TGTTTGGTTATGGACGGGAGACTGAGAGAGAAATTAAAAGGACATTTGTA
GGTATGTCCCAAGGAATATCGATTAGGAAACTATGTCGACAAAAGTGTGC
AAATAACAATTGCTTTGGACCACCTTGCAACGTCTTTGGATACGGTCAGG
AAGTAAAAAGACTTGTAAATAGCGGCAAAGAAAGTGGAATCGGCAAACGG
CGAATGGAAACTATTTGGAACAGAAGCACTTTTGCTCAAGGGATCGTCGA
TTTGAGATCAATTTGTAGAGAAGCTTGTCGTAACAGGGGCTGCTATGGTC
CTCCTTGCAATAGATTCGTTGGCAAAAGAAGCGCCGGTGTTTACGGAGAC
AATAATCAAGTTGAAAAGCGAGTTTCATTCCCAGGTTCAAGTCCTTTGAA
AGTCCATTGTAGACTATGTAATCTTAAGAATGTTGAGTGTCTTCCGTCTG
GTCCGTGCAGAAAATTCAGAAACCGTAAATCTGCAGAATAAATGGAGTTG
CATCTTTTGGTATCGTTTGTCTTGGTTTTAATTTACCCAGTCGAATCAAG
GAGAAGTTTTCGTTACGGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031397XLOC_031397Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049488-proteinTCONS_00049488-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049488-exon-scaffold_16-1575043694:19444..19667TCONS_00049488-exon-scaffold_16-1575043694:19444..19667Clytia hemisphaericaexon
TCONS_00049488-exon-scaffold_16-1575043694:17295..18610TCONS_00049488-exon-scaffold_16-1575043694:17295..18610Clytia hemisphaericaexon
TCONS_00049488-exon-scaffold_16-1510915933:19444..19667TCONS_00049488-exon-scaffold_16-1510915933:19444..19667Clytia hemisphaericaexon
TCONS_00049488-exon-scaffold_16-1510915933:17295..18610TCONS_00049488-exon-scaffold_16-1510915933:17295..18610Clytia hemisphaericaexon
TCONS_00049488-exon-scaffold_16-1491911889:19444..19667TCONS_00049488-exon-scaffold_16-1491911889:19444..19667Clytia hemisphaericaexon
TCONS_00049488-exon-scaffold_16-1491911889:17295..18610TCONS_00049488-exon-scaffold_16-1491911889:17295..18610Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:17295..19667 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0533099	0.0779783	0.0603602	0.118106	0.287566	0.0852143	0.0342691	0.288741	0	0.0556447	0.0540101	0.248529	4.29002	4.38159	11.1398	8.30006	2.44119	2.54316	4.67524	7.62014	1.03086	0.754227	0.641803	0.861345	0.858547	0.817315	11.0744	7.87928	0.473359	0.542562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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