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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049486 ID=TCONS_00049486|Name=TCONS_00049486|organism=Clytia hemisphaerica|type=transcript|length=2400bp
TCCAAATATACATAAATGGAAGTATAAAGCAAACATTTTGCATTGAAACC
AAGCTCAGCAATCAATCAATAGTTGATAAAGTTTTATAGTTTGTGATTGC
TAACTGTATAGTCCCTGGAGGATTTACTTTGAAATCCTACGCGTTAAGAG
TATATTTTGCATTGTTGTGGGATGGGCAATTTCANTTGAATCCTTCGCGT
TAGGAGAATATTTTGTATTGTTGTGGGATGGGCAATTTCTTCAATGACAT
TCCGATTATAAATTGGGCTCACTTTATCAAGGATAGAATCAGTTATCATT
TGAACTGTGTACAGACATAACAAATAATTTTGGAACCAACTTGATTTCTC
TCTCGACAAACTAATCTCAAGACAAGATGCCTGAAAACTGCACCAAATGC
GATGACCCAATCCGTGATACTACCGTGACATTCGAAAAGAAACCTTATCA
TCCAGAATGCTTCGTTTGTCATCAATGTCAAAAGAAGTTATCAGGCAAAT
CTATCTTCCAACATGAAGGACACAATTATGACGAAGAATGCTATTCCGAA
TGTCATGCCAAAAAATGTGCAGTCTGTGAAAAACCGTTGACAGAAACAAA
CGTTAAATTTGTTGTTTATGGTGGCGAACAATTTCACAAAGATTGCTTCA
CTTGTTCTTCGTGTCATAAATCACTCTCAGGCGAGAAGTTTTTCACTGAA
GGAGACAGAAGAATCTGCACCGAGTGCAAGTgaaagattttatattttct
accTATACCATTAATTTACTAAAATATcagttttaaattttgttcGAGAG
cagaattttcttaactttttacctttttttaactaataaataaaactttg
tattttaacaattttcaaaataacttgAATCTAAAGATAACTATAAgatt
ttaaaatgttaaaaattgttttatctTAGGGAGGGAAAGTAAAAACACCG
TATTAGGGTCTATAATTACCATTTCAATTTCTAAGACAAcactgtgtcac
agacccgctgggaaaatttgccaaaaactTTGTACTcggtaggaaaatac
cctgaaatttcagcccactgggaaattgactttgattgcaTTCCCAtctg
aaaatcaatttttaaaaactgcactcaaaaaccatccccactagatttct
taaccttagaacaatagaatttatatcCTCATTTGCGTTTCGATAGGAAG
TTTTAtctccactgaggaaaaaagttccactgggggctgtgagacagggg
tgttttaagaATTTGTCTTTGCTTCCAATTTCATTTTGACAGATAAGTCC
AAAGAAATTTTAGAaggtttNTTACCATTTCCCAGCTAGACCATAGCGTT
TTTCCATCGCTTATGTAACGTCATATGAACGTTGATTTAATGTTTGTTTG
AGATTAAGGAAAGTAAACTTAGTCGACCAATCCACCAAATTAAGGCACCA
TATTAAAGGAAGACCCTCCATGATTTATATTAAATCGGTTGNGGAAATTT
GATTAGTTTCGACCAAGCTCAAAAAATCTGtgtgaaaaaatgaaacaatt
ctATAGAATCTTGACTACAcggtctttttttattagaagtcAGTTTAtaa
agaacatttaggctgaaattcgtcgaaaaattaagaacataagaacatgc
ccagcctcagtttggaaaacaATGACAAGAATCTACATTTTTTCCCTCTT
tccaagcagttttaaccgaacttaggaaTGGATTTCCTAAAAttgagagt
caaatattgtccaaattttaccaattttaagttctctttattttgcatga
tattgtcgatttagagtagtctgaaaaattaagaacgcatttaagaacat
tttNgtttttggtacctaaaagATGGCTCTTTCATTTgtgaacaatagaa
tgctaagcatgatgcgagcctgatgtaggggcagacaattgcttataaaa
aaaaacatgtatgaaaGGTTTTAAGAAATAATGTAAATAGTaagacttca
aaataaaaatatgtctGAATCTAGTTCCTTGATACATAATAAAGGCCCTA
TGTTTACATCAGACTGGCAACTGTTGTTCAGCACCTTCTTGGCAATTTTT
CCTTGTTTTCCTGTACACAGTTCTCTAGCTCCAAACGCCCCAACCCTTTT
ATATCCGCCCTCTCTCCCTTCTGCTGACAGAATCAATACACAggctgcaa
aattaaagtctgaaatCAAATCACACTTTTACAAGTCTGCTAGTCTATGT
CTATATGGGAAATCTCACTACAGTGTGTCTCAAAAAAAGCGGTAAAATTC
TCTTCATAATTTATGTGAAATTCTATGActtatatatttcatattttaat
cTCAAAAACGTATTAAATTATGTTGGGAATTGAATATATATTGATTGAAC Run BLAST on NCBI transcript from alignment at scaffold_16:2404..9804- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049486 ID=TCONS_00049486|Name=TCONS_00049486|organism=Clytia hemisphaerica|type=transcript|length=7401bp|location=Sequence derived from alignment at scaffold_16:2404..9804- (Clytia hemisphaerica)
TCCAAATATACATAAATGGAAGTATAAAGCAAACATTTTGCATTGAAACC
AAGCTCAGCAATCAATCAATAGTTGATAAAGTTTTATAGTTTGTGATTGC
TAACTGTATAGTCCCTGGAGGATTTACTTTGAAATCCTACGCGTTAAGAG
TATATTTTGCATTGTTGTGGGATGGGCAATTTCANTTGAATCCTTCGCGT
TAGGAGAATATTTTGTATTGTTGTGGGATGGGCAATTTCTTCAATGACAT
TCCGATTATAAATTGGGCTCACTTTATCAAGGATAGAATCAGTTATCATT
TGAACTGTGTACAGACATAACAAATAATTTTGGAACCAACTTGATTTCTC
TCTCGACAAACTAATCTCAAGACAAGATGCCTGAAGTAAGGATATTTCAA
TTAATCTTAATTAAACTGTTTGTTGACCAGTGTCATTTGGGAGTTACATT
AGGGTACTGTTTCTTATTTACACGTTTTTTATCCAAATTTTTTTGAAGCT
TTCGGATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAACA
TGTTCTTATTTTGACCATTTTGGGAAGACTTTTGACCATTTTTCTAAGAA
ATAGGGTGTTTTTGAGTTCACAAAGCCTTAAAATGTTCTTAACTTGTTCT
TAACATTTTTGCCAGCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATA
AAAAGAAAACGTGCATTTGTTTTTGTTTACATGTTGTTGGAGACGCAGAA
GATTTTAAATCAAGTTTGTGAAGAGTATGTTTTTGAAACCATGCGCCTTT
AAATTTTCGTATCGATGAGCTGACACCAGTGACTATTTTTTTTAGTATTC
CTTTTTGTGTCAATTCCGGGTTTAGATAGGAATGTATATATCACGGATGT
GGCGGTTGATTTTTTTGAAGGACTCCGTAGCGAGCCTGAACCTTTTCTTT
CCTGCTAAACTTACTTTATATCTAAAAATTACTTTTCAGACGAGTTCTAG
ATCTGGCTTGTTTATTTTGAAGGTATTTCTTATACAGCATAAGTCAACAA
AAAGTACATCGCTTGTAACGATATACAAACAAAAGCGGAAATAAAAAACT
CTTTCGTTTCGACAAGAAAACACTTTATAATGTGTTGTGTAAATGAGAAA
ACAATCCTTAAAAGGACAACAAATGGTGTAAATAGTTTATCAGAAAAACA
AATACCTCATAATTATGATTTCAAAACAAAGTGGATTAAATGAGGATTAG
GAATTAAGAAATTTTTTTAAAGAGATTTTATGTGATTTTAGCATTATGAC
ATCATCTCTAGACTGCCTCAGATTGCACATAACTGTCATGTTAAGTTTAT
TTTTATATAAGTGTATTTTTTATACTAACTTGCTAGCTCTGCAAATACTT
AGTATCCAAAATTACGAGAAATAGAATTCTATTCTTCCTCCCGAAAAAAT
GACAAAATGGATTTCGCGTAAATAAAGTTTTATTTACGTTTTGTTTTTAT
GTTAGAACTGCACCAAATGCGATGACCCAATCCGTGATACTACCGTGACA
TTCGAAAAGAAACCTTATCATCCAGAATGCTTCGTTTGTCATCAATGTCA
AAAGAAGTTATCAGGTATATATCATGTTTTTTTGCCTTAGTGAGTGTGTC
CAAGGATACTTAACAGTTTTTATATGAAACTATCCTAATCTCCTTCATTT
TACTAACACCTACACGTTTTTTATGAGAGCATTCAAAAAATTCTGAAACC
TTTTGATATTAATAACTTTTTGAGTCAGGTCTTAAAATGTTCTTAACGTC
TTGTTATTTTCTCCATTTTGTAAATATTTCTTTTCCCTTTTCTTAAGAAA
TCGGGTGGTTTAGTGTCCGTAAAGCTTTAAAATGTTCTTAACTTGTTCTT
AATATTTTGGCCATCAATGTTTTTAAAGTTTGTTCTTATAGAAAAACGTG
TAGTGATACCTTCAAGTTTTCCTTATTTCATACTTGTCAACTACAAAATA
AAATATTACAGACTGATGGGTTGTTCTTAAATTGTTCTGATTTTTTGGTA
TTTATTTGAGTCTCGTTGTTTTTGTAAAAAGTTGACAAAGAAGCATTACA
CATTGTCTTTTCTACATTAATCAGGGTTATCTGATAGGCAATAAGCAGTT
GAGATCTCTAAGCAATTACACTATGAGTTTTGGTTTCCTCAATTGTAAAT
TAATTTGAAATGAAAAAAACTAACTCGAGTGGCCGGGGCCCGGGGGTCTA
CTACGTAGGTTTGCAAAGTGACGGGTATGTCCGAGCCAAAAATCGAAAAT
CGACCCTAAGAGAGAAAAAATTGGCATTTTTGGGTCCCTTAGAGAGATCT
TCTCAAAATTTTTGTCGATTTTCACTCGATTTTTATCCAAATTTTAGAAA
AACACCACCCTTTGAGAGAGGGAACCGACCCTTACCGTCTGCACATACCC
AGCACTAATTTTTGCCTAAGTACCCCCCCGGGCTTGAGTGCCGTGTGCAT
TTTATCAAAAGTTGAATTAAATTTACTAACACCAAGAAATTTATAAATCC
TTTCCTAACACTTTTCATTATCTCACTTACAACGCGTTAAGTTTTATAAA
CATTAGGGTTAATATTCTAAAATTGTGGTATTTAGATATGTAAATCATAA
ATGTTAAGATAGGTATCAAAACCACTTTTTGAGCCTTGGGCTAAGAATAT
GAAATTGTGTTATTAAGATAACTCAAAAATGTTTAGGATCGTAGTTATCA
AAACCACTTTTTGAACCTTACATCATTTTACACCCCCTTACATTCAATCA
CTTTTTGCACTCCGCTCTTCTTCACTATGTGGTTTTCAAACTTGTTCCAA
CATAATTTCGTTACTCTTAGCAACCTAGCTTAGTTACCCAGCTATCTTAA
TCATTAGGCAAATAATCACAGATAAATGAGAAATAAAATTTCAATAAAAC
CGTGTTTAAACGTGGATTTTGCACACGGAACTATAACCTATAGCATAGAA
ATCACTTTTCTAAGAGTCACATTCCACGCGCAGTTTTATAACAGCTTCAC
TCAATGCAACTGTGATAATTAATTAAAAGTTCAAGAACTACATTTGAATT
CAAATCTACTCAAAACGTTGCGTTTTATTCTGTGAATAACCACAGCAATT
CAATTCGTCTAGACTGTTTCATAATAACTGTACTGCCCTCCCTCAACACA
GAAACTTTATCGCTCCGTAAAACAATTATTAAAGCTAAAATAGTCTGATA
GGCAAAATAAAGAGTATTCTAGGCGTCTTTTGTAAGACTGGCCTCGACTC
GATGTGCGCTGCACACCACTTGATCATTTTTTTACGCTGGTGCGTTATCA
TATTAACGGATATAATGGAGGAGGCGACCCAATTGGTTGAACATAAAGTC
AAAGTCATTTTTCAAAATTCCTTTTCGGACCTTTCGGCCTCGGAAAGCTG
GACTCAACGTGTAAAACCCTGAAACAGGTCTTTAATAACTCTATCTCCTT
GTTTGAAAAGATAACCAAAAAGCACTAACTCAATTTTAAAGCACTAACAC
TTTTTCACTAAAAATAATGCAAAAATAACCTGGCAGCAGATACTAATTTT
CCGCACTATACGCACAAAAACGCACGCACCAACACATACATGCATTCGCT
CCTTTCCCTTCAGGCAAAGCGATTTACAAACATGAAGGTCACAACTATGA
TCAAGAATGCTATGGAACGTTTCACGCCAAGAGGTGCGCAAAATGTTACG
AAGTTTTAACCGACCCTAAAGTCTCTTACGTACAGTATGACGGGAAGACG
TTTCACCCGGATTGTTTTACGTGCTCACGTTGTGATAAAAGTCTTGCGAA
ACAACAGTTCTATCTTGACGGCGAAAACAAACTATGCGAAAAATGCCATT
AAGGCTGACCACATAATAGGGTCTTGATGATTAAATGATGTTTTAATCAT
AACGTTGCCCTTAAAAGGCCGTAGAATATTGTGCACATAAAAGATTTCTA
TAATTGCTAGCTATGAGGCTATGACGCAGAATTTGCATCAGAAATCTGTT
TGGAAAAAAAACTCTCAAGTACTTTGTCATGGGAAAGTCTATAAAGTTCG
TAAAAAGTTTAATTTTAGCCAAATTTCAGGGTTTTTATGTAAAATCTTTT
GGTCTTGCTTTCATTAAAAATAACACGTAACTAGCATTTTTATCCCGGTG
CTTGAAAGTATTATTCCTTTTGGTGATTTCTATAAGCTACATAAAATATT
ATAACACTACAAATTATTAGATAATTTTTATATAGAAACCTTATTTAATA
CCTCACCAAATTCAGTATAACATTTGAAATGGGGTCTAATTTCTTAAAAC
AATAAAATAGTTTTATATCTTGGGGGAGGGGGAGATGGGACAAAAAGAGT
TTTTGATTATTTTATCATATATATGAAAATATAAATTTAATTGTACATAT
TAACAATATATCAAATTTTAGTTTTTATTTCAAAGTTATTTCCACGAAAA
TCCTAAATTCTGCAGTCTTGTTTTTCAACACTAACTAAAACACAAGTCAG
GTTAATTCTGGCCCTTAAAGCTCGATCAGCTATTCCAGGAATGGTCTGTA
CCCCTATGTTTAGGAGGTGTGACGTCCATCCAGGGTGGTCTGGAAAATAA
AAATCCAGGGGGTCTGGGTTTTTCGATTGTAAAAACCCAGGGTGGTCAAT
AAAATGAGGTGACAAATCCAGGGTTTTCAGTGAAACGAGGTCGAAAATCC
AGGGTAGTCGAAAAAAAAGTGAAAAAAACCAAAGGGGGTCCCTCCCAAAA
AAAGACCTCCTCAACATAGGGGTTACACATTTTTCTGGGATAGACCGATA
CTCATTCTAAAACATAATATAGATGAAAACATTCTTTATTCTGATTTAGG
GTCATAAAAGTCATTTAACATAACCATAACAAGACATCATTACACTGTCT
TAGAAATACCCACGAGACAATAACTAACATTCAACCGTCAACCATTACAG
CTTTCATAAAATCACTGATCACCATGTTGTGTCTAATACATCTTTTCGAC
CGTAGCCGCCAATTGCCGCGCGTGCACTTTTTGTCCGCTTTATACCACTA
AAACCGTCCCAGTCCTTTTTCGCCTATATAGACAGTAGAAAAATGTGTCC
AAAAAGGATCAGATCGAGTTTAGGGGGATAACGACTACGCGACTACGCTA
TTGTCTTAAAAGTGTCTCAGACTCACCTAACATTATTAGGGACTATTAAT
AAATATATGTTAGAGAATATGTTCCAGCTTGGACTCCTCATAATCAAGGA
CAAGAACTACATTTGTTAGCAATTCTACCAACGATACCAGACCATCGTGA
CATCAATACATCATCATCATCATCATCAAAACAAACTATCATACATTTAC
ATACCAACGCTTTATTCATTAACTGACTTTAGAGGCTTTAAGAAGATTAC
AGTAATAACCCAAAATATCTTCTTTTTAATTTCACTAATATTCAGGCAAA
TCTATCTTCCAACATGAAGGACACAATTATGACGAAGAATGCTATTCCGA
ATGTCATGCCAAAAAATGTGCAGTCTGTGAAAAACCGTTGACAGAAACAA
ACGTTAAATTTGTTGTTTATGGTGGCGAACAATTTCACAAAGATTGCTTC
ACTTGTTCTTCGTGTCATAAATCACTCTCAGGCGAGAAGTTTTTCACTGA
AGGAGACAGAAGAATCTGCACCGAGTGCAAGTGAAAGATTTTATATTTTC
TACCTATACCATTAATTTACTAAAATATCAGTTTTAAATTTTGTTCGAGA
GCAGAATTTTCTTAACTTTTTACCTTTTTTTAACTAATAAATAAAACTTT
GTATTTTAACAATTTTCAAAATAACTTGAATCTAAAGATAACTATAAGAT
TTTAAAATGTTAAAAATTGTTTTATCTTAGGGAGGGAAAGTAAAAACACC
GTATTAGGGTCTATAATTACCATTTCAATTTCTAAGACAACACTGTGTCA
CAGACCCGCTGGGAAAATTTGCCAAAAACTTTGTACTCGGTAGGAAAATA
CCCTGAAATTTCAGCCCACTGGGAAATTGACTTTGATTGCATTCCCATCT
GAAAATCAATTTTTAAAAACTGCACTCAAAAACCATCCCCACTAGATTTC
TTAACCTTAGAACAATAGAATTTATATCCTCATTTGCGTTTCGATAGGAA
GTTTTATCTCCACTGAGGAAAAAAGTTCCACTGGGGGCTGTGAGACAGGG
GTGTTTTAAGAATTTGTCTTTGCTTCCAATTTCATTTTGACAGATAAGTC
CAAAGAAATTTTAGAAGGTTTNTTACCATTTCCCAGCTAGACCATAGCGT
TTTTCCATCGCTTATGTAACGTCATATGAACGTTGATTTAATGTTTGTTT
GAGATTAAGGAAAGTAAACTTAGTCGACCAATCCACCAAATTAAGGCACC
ATATTAAAGGAAGACCCTCCATGATTTATATTAAATCGGTTGNGGAAATT
TGATTAGTTTCGACCAAGCTCAAAAAATCTGTGTGAAAAAATGAAACAAT
TCTATAGAATCTTGACTACACGGTCTTTTTTTATTAGAAGTCAGTTTATA
AAGAACATTTAGGCTGAAATTCGTCGAAAAATTAAGAACATAAGAACATG
CCCAGCCTCAGTTTGGAAAACAATGACAAGAATCTACATTTTTTCCCTCT
TTCCAAGCAGTTTTAACCGAACTTAGGAATGGATTTCCTAAAATTGAGAG
TCAAATATTGTCCAAATTTTACCAATTTTAAGTTCTCTTTATTTTGCATG
ATATTGTCGATTTAGAGTAGTCTGAAAAATTAAGAACGCATTTAAGAACA
TTTTNGTTTTTGGTACCTAAAAGATGGCTCTTTCATTTGTGAACAATAGA
ATGCTAAGCATGATGCGAGCCTGATGTAGGGGCAGACAATTGCTTATAAA
AAAAAACATGTATGAAAGGTTTTAAGAAATAATGTAAATAGTAAGACTTC
AAAATAAAAATATGTCTGAATCTAGTTCCTTGATACATAATAAAGGCCCT
ATGTTTACATCAGACTGGCAACTGTTGTTCAGCACCTTCTTGGCAATTTT
TCCTTGTTTTCCTGTACACAGTTCTCTAGCTCCAAACGCCCCAACCCTTT
TATATCCGCCCTCTCTCCCTTCTGCTGACAGAATCAATACACAGGCTGCA
AAATTAAAGTCTGAAATCAAATCACACTTTTACAAGTCTGCTAGTCTATG
TCTATATGGGAAATCTCACTACAGTGTGTCTCAAAAAAAGCGGTAAAATT
CTCTTCATAATTTATGTGAAATTCTATGACTTATATATTTCATATTTTAA
TCTCAAAAACGTATTAAATTATGTTGGGAATTGAATATATATTGATTGAA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049486-exon-scaffold_16-1575043694:9420..9804 | TCONS_00049486-exon-scaffold_16-1575043694:9420..9804 | Clytia hemisphaerica | exon |
| TCONS_00049486-exon-scaffold_16-1575043694:8191..8299 | TCONS_00049486-exon-scaffold_16-1575043694:8191..8299 | Clytia hemisphaerica | exon |
| TCONS_00049486-exon-scaffold_16-1575043694:2404..4309 | TCONS_00049486-exon-scaffold_16-1575043694:2404..4309 | Clytia hemisphaerica | exon |
| TCONS_00049486-exon-scaffold_16-1510915933:9420..9804 | TCONS_00049486-exon-scaffold_16-1510915933:9420..9804 | Clytia hemisphaerica | exon |
| TCONS_00049486-exon-scaffold_16-1510915933:8191..8299 | TCONS_00049486-exon-scaffold_16-1510915933:8191..8299 | Clytia hemisphaerica | exon |
| TCONS_00049486-exon-scaffold_16-1510915933:2404..4309 | TCONS_00049486-exon-scaffold_16-1510915933:2404..4309 | Clytia hemisphaerica | exon |
| TCONS_00049486-exon-scaffold_16-1491911889:9420..9804 | TCONS_00049486-exon-scaffold_16-1491911889:9420..9804 | Clytia hemisphaerica | exon |
| TCONS_00049486-exon-scaffold_16-1491911889:8191..8299 | TCONS_00049486-exon-scaffold_16-1491911889:8191..8299 | Clytia hemisphaerica | exon |
| TCONS_00049486-exon-scaffold_16-1491911889:2404..4309 | TCONS_00049486-exon-scaffold_16-1491911889:2404..4309 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:2404..9804 - |
Blast
BLAST of TCONS_00049486 vs. Swiss-Prot (Human)
Match: FHL2 (Four and a half LIM domains protein 2 OS=Homo sapiens GN=FHL2 PE=1 SV=3) HSP 1 Score: 89.7373 bits (221), Expect = 2.354e-19 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 2
Query: 386 NCTKCDDPIRDTTVTFEKKPYHPECFVCHQCQKKLSGKSIFQHEGHNYDEECYSECHAKKCAVCEKPLTET-NVKFVVYGGEQFHKDCFTCSSCHKSLSGEKFFTEGDRRICTEC 727
C +C PI VT+ ++P+H ECFVC C+K+LSG+ + Y C+ + +AKKCA C P++ K++ + Q+H DCF C C SL G F TE D +C +C
Sbjct: 161 QCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 275
The following BLAST results are available for this feature:
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