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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049482 ID=TCONS_00049482|Name=TCONS_00049482|organism=Clytia hemisphaerica|type=transcript|length=1743bp GAAACTGGGCGAACAATGAAAATCGGGGAAAGTAAACCGGTCTCAAATAA TCCTTCCAATCATTTACCCATGATTCCACAGGCTAATGTTCAAAAATATA GCCCTAGACCTGCACGTAAAGCATCGCAAAGTTCCTACGTGCCGACTATT TCAAATAAACAACCGCGACCACCGAGTCAAGAGAAGAAACAACGACCCGT TGCCGgtaaaatgatggaatcgaaCTTAAGAAAGTTTTCAGCAGCAAACC GACCTCGTTTTGTACCTGATCAACATTTCAAATCACCACCCCAAATCAAA CACCCTGTGCTCAACACTCGGCCCTCAGACCAACGCCCTTCTTCACCAGG AAATCAGCAAAACCATTTGAATGTACATTTGACGCTTGCATCTCAACGCC CCACATCGCCCGGTCCTAAGGGTGCTGGGGTTGGCGAAGAAAAGAAAGTT CGAAGAATTTCCCTAATTAAGAGTCCAAGACCGTTATCACCAAACCCACA TGGAATGAGTGCAGTGGGAGCAATAGCTGAGCAGCCGGAAGATGAAGAAA AACCAGTTGTCATAGAGATAGAAGAAGAACGTATCAACAAACCTTGGAAT AACTGGATCAAAGCTGTCACTGTAGAAGCAGACACAGACGTGGAAAGTGG TGGAGAACGCCCAATGACGCCCGATCCAGAGGGTGGTTCATCAAACAGTA CACTTCAAGTACAACAACAGGGTAACGCTAGAAAGAAATCATTCGATCGA TGGGTACAAGAGAAAGCACAGGaggaacaagaaaaagaattacaaaagaT GAGAGAAGCTTATGAAAAAGAAAGAGAGGAGGAAGAGAAGAAGGCATCAC ATCACGGCAAGAGTTTTGACGATTGGATGCGTGAAAAAGAAGATCGCGCT cgacaagaaaaagaaaaacatgaacaagaacaaaaagaaaaggaaagaaa agaagCTGAAGAAAAGGCTAAACAACAAGGTAAATCATTCGAGAAATGGG TGAAAGAGAAGGCAGAGTATGACCGTCTATTGAAACAACAACATGAACAA GACgctaaagaaaatcaaaagcaaCAGAAGACGTTGAAAGGGAAAACTTT TGAAGATTGGCAAAAAGAAATGGAAGTAAAACGAAAGCAGGATattgaag aaaagaaaacgAAAGAGACCAAGgaaaaggAAAAGCAAGAAGAAGCAAAA GTACGGCGCCGAAAAGAATCATCGGCAAAATTCCAACAATGGTTACTGGA TAAAGAGAAATTAGCTTTGGAAAAAGAAATGCAAGAATTGAAGAAACGAA AAGTATCGACCGCTAAAAATGCTACACGTAAAGCAAGTACAATGAAAAAG CCTGCTCCGAAATAATAACATTGTGTCTTCAtcaaagagaaaattttgat ttcataggAATCCACTGAAACATGTAGAACCTTGACTGCTAATCTGCTTA ATCGATCAACGGCTAAGTCAAAGTAAGGTATTGAACCATACAGGTTTTAC TGTAAATAAATATTACTGATTTTAAGAATTCGATTCCTTCATTATCAACT ACTGTTTGTTACCTTCTGGTGTCATGGTAGCACCTAATTCCCTAAACTGG TACGGTGAAAATGTAGAGCTTTTCAGTTTGTGACGATTTTTTCCAATAGC AAATATCGATGCACCAAAAGGAAGAAAATCATTTCATAAGCTAAATTTAT TCTGCTTTATGCAGTGGCCAAAGCGAAGTTCTTTTTGTCTCAG Run BLAST on NCBI transcript from alignment at scaffold_16:254827..262191+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049482 ID=TCONS_00049482|Name=TCONS_00049482|organism=Clytia hemisphaerica|type=transcript|length=7365bp|location=Sequence derived from alignment at scaffold_16:254827..262191+ (Clytia hemisphaerica) GAAACTGGGCGAACAATGAAAATCGGGGAAAGTAAACCGGTCTCAAATAA
TCCTTCCAATCATTTACCCATGATTCCACAGGCTAATGTTCAAAAATATA
GCCCTAGACCTGCACGTAAAGCATCGCAAAGTTCCTACGTGCCGACTATT
TCAAATAAACAACCGCGACCACCGAGTCAAGAGAAGAAACAACGACCCGT
TGCCGgtaaaatgatggaatcgaaCTTAAGAAAGTTTTCAGCAGCAAAGT
AAGATATATGATATGAAACAATGGTTTCAATGGGGTTGGATCACTGATTT
CTAGCTGCTTGACTGGATTGAGCTTTCCATATAAGGAAGCGTATTCAGTT
TTAGAGCTGACTAGTCCatcatcttgttttcaattctggttGTCACAGCG
AGATTCGAACGAAGGTCCACTTAGAAAACAACATGGTTGACTAGTCAACT
TCAAAACTGGAAACACTTCCATGGGAAATCTTCGAGCAGTAAGCCTATCT
AGGGTATAAAATAATGTGATGTCTATGATTTGGAAAGGCTTTGTCATTAC
TAGCACCTTAGAaacaaaaactgacaaaaacgTTACCGAGAGGTGAATTC
TAGCTTTGGACAGTCTCCTGTGAAGACCACATTCagcgattttctgaaaa
tttggtTTTAAAGACACACAAAGAGCCTTTTTAATCATCATATTAATCTA
CGATTGATTATTATGCCTCCGTCAAATGCGATCTTTGAGAACCCTTGCTT
GGGTACCAGTTAGGCTTTAATTTGTCGAAgttcaaaaaaattctcttgGA
TGTTTGTAACCTATAATCTTATATTATACATCTTTTATACTTTACCTTTT
AGCCGACCTCGTTTTGTACCTGATCAACATTTCAAATCACCACCCCAAAT
CAAACACCCTGTGCTCAACACTCGGCCCTCAGACCAACGCCCTTCTTCAC
CAGGAAATCAGCAAAACCATTTGAATGTACATTTGACGCTNCTCCAATCA
TAATAGAGCAAACCGAAACTGGGCGAACAATGAAAATCGGGGAAAGTAAA
CCGGTCTCAAATAATCCTTCCAATCATTTACCCATGATTCCACAGGCTAA
TGTTCAAAAATATAGCCCTAGACCTGCACGTAAAGCATCGCAAAGTTCCT
ACGTGCCGACTATTTCAAATAAACAACCGCGACCACCGAGTCAAGAGAAG
AAACAACGACCCGTTGCCGgtaaaatgatggaatcgaaCTTAAGAAAGTT
TTCAGCAGCAAAGTAAGATATATGATACGAAACAATGGTTTCAATGGGGT
TGAATCACTGATTTCTAGCTGCTTGACTGGATTGAGCTTTCCATATAAGG
AAGCGTATTCAGTTTTAGAGCTGACTAGTCTatcatcttgttttcaattc
tggttGTCACAGCGAGATTCGAACGAAGGTCCACTTAGAAAACAACATGG
TTGACTAGTCAACTTCAAAACTGGAAACACTTCCATGGGAAATCTTCGAG
CAGTAAGCCTATCTAGGGTATAAAATAATGTGATGTCTATGATTTGGAAA
GGCTTTGTCATTACTAGCACCTTAGAaacaaaaactgacaaaaacgTTAC
CGAGAGGTGAATTCTAGCTTTGGACAGTCTCCTGTGAAGACCACATTCag
cgattttctgaaaatttggtTTTAAAGACACACAAAGAGCCTTTTTAATC
ATCATATTAATCTACGATTGATTATTATGCCTCCGTCAAATGCGATCTTT
GAGAACCCTTGCTTGGGTACCAGTTAGGCTTTAATTTGTCGAAgttcaaa
aaaattctcttgGATGTTTGTAACCTATAATCTTATATTATACATCTTTT
ATACTTTACCTTTTAGCCGACCTCGTTTTGTACCTGATCAACATTTCAAA
TCACCACCCCAAATCAAACACCCTGTGCTCAACACTCGGCCCTCAGACCA
ACGCCCTTCTTCACCAGGAAATCAGCAAAACCATTTGAATGTACATTTGA
CGCTTGCATCTCAACGCCCCACATCGCCCGGTCCTAAGGGTGCTGGGGTT
GGCGAAGAAAAGAAAGTTCGAAGAATTTCCCTAATTAAGAGTCCAAGACC
GTTATCACCAAAGTGAgtacaaaataaatattttcattaattaCGGAAAA
TAGGGAATTGGCTTTGGATCGAGAGAGCTAATTAATTTAAAACGTAGATG
CAATAGTTCAGAAATTCTCTGAGATGAAAAAACTTTCGAGAATTTGTGGG
TGCTTTTTTGCCTcgaattcaaaaaatatattttttgcatATCTACCTCG
ATAGCCCACATGGAATGAGTGCAGTGGGAGCAATAGCTGAGCAGCCGGAA
GATGAAGAAAAACCAGTTGTCATAGAGATAGAAGAAGAACGTATCAACAA
ACCTTGGAATAACTGGATCAAAGCTGTCACTGTAGAAGCAGACACAGACG
TGGAAAGTGGTTAGTAAAACCTTTAGTACACAAAATACTGTTATTTGGAA
TCACGATAAATGAAGAAACTAAACATTTAATATAGAAGAGGCTTCTTTTA
GGCCTTTACAACCAAACATAATTTGGCGAGAAACTAATCGGAAAAAAATA
CTTGATCTTTTGACAAATCCTTTTAACTCATTCTCTTCAGAGCCTCTTAA
TCCTACTTCTTAACCTTAATTACGAATCAATCCTATCCTGGAGATTTCAA
TGGCTTTCAGGGTCCATTGGCTCCCCTTTTTCTGTTCCGGGGATTAAAGG
CTTTAAAATGCAGTTAAAAAAGAGGACTTGCTTTAAAATGGTCTGCGAAT
TAGTAGATAACTGGGTTAATGACATTGGGCGTTTGTGGTTTTCTGAAAAA
TNGCGAATTAGTAGATAACTGGGTTAATGACATTGGGCGTTTGTGGTTTT
ATGAAAAACACCATTTCCTTTTCAAGGTGGAGAACGCCCAATGACGCCCG
ATCCAGAGGGTGGTTCATCAAACAGTACACTTCAAGTACAACAACAGGGT
AACGCTAGAAAGAAATCATTCGATCGATGGGTACAAGAGAAAGCACAGGa
ggaacaagaaaaagaattacaaaagaTGAGAGAAGCTTATGAAAAAGAAA
GAGAGGAGGTATGGGAACTTTCTATTTTCTCAATTAGCACCCCTTTACTC
ACCATCAACCTCGCTCCCTGTGTATTATCGACTTTTTTATGCttaccatg
gcgttctaaatctacaaAACTTCTCGCTGCgttagttttttttcattttt
ttcactccgtttcaatgcaacgacttcgaaATTTGAAACCCCACAAAATT
GACGTTGCTGCACGCTTACTAGGTTTGTAGATTTGAAACGCCATGAtgtt
tactgatagcgctagataatacccttgTATTGTCTGCTTTCAGAATGcta
aagattacgtaattcgaTAACAAAatgtcagatttcatttgttccttGAT
TTAAAACCTTTACGCACGTCACGTAAGAATTATGAAGTATTGctttgaga
agttccccctctcagaggaGGAACTCTTACATCAGCCTTCTCTGTTGTTT
AtacagtaacgtaaataaagcctgggatacacggggaccaTATTGAGATC
ACCTGCACCAAATGTTTTCATCAAATAGATGCCGaactttaaaattcaaa
aatatgatCTAAAAAAAGCATGGCGCGGTAATTAGCTTGAGGAAACATAG
TATTAAAACTCCGGACACAGGCAAAGGCATCATTTCTAATAATATCAAAA
AACGAGGCATTTGAGGCTGAAACTTCCTGAACTAAAGTCATATTCCATGG
GATCTCTCACCTAAATTTATCCCCAATGGAAAAACCACATGATGCATTAA
ATTGAAACCTTTTATTGAGAAGTTTATTGGAAACACTTGCATTTAATAAT
TATTTAAATTCAATACAATGTAACTATATCATACCACATACAGGAAGAGA
AGAAGGCATCACATCACGGCAAGAGTTTTGACGATTGGATGCGTGAAAAA
GAAGATCGCGCTcgacaagaaaaagaaaaacatgaacaagaacaaaaaga
aaaggaaagaaaagaagCTGAAGAAAAGGCTAAACAACAAGGTTGGTGGC
TGTCTGTAGACCTCTGTTTATAGCCTACTTGCAAGGTTTTGTGGCTGCCT
GTAGACCATTGTTTGTAGCCTACTCGTATAGGTTTAGTGAATGTCTGTAG
AACTTTGTTTGTAACCTACTTGCATAGGTTTTGTGGCTGCCTGTAGACCT
TTGTTTGTAGCCTACTCGTATAAGTTTAGTGCTGCCTGTAGACCTTTGTT
TCTAGCCTACTTACAAGGTTTTGTGGCTGCCTGTAGACCATTGTCTGTAG
CCTACTCGTAAAGGTTTAGTGAATGTCTGTAGACATTTGTTTATAACCTA
CTTGCATAGGTTTTGTGGCTGCATGTAGACATTTGTTTATAGCCTACTTG
TAAAGGTTTGCAAGACTATGTCAGGTAGGTTAGATATTACAACAGTTATG
AACTGTGATGTTTTAAGAAAATACTTAGTCAAGGGTAAATTTNATGATCT
AAAAAAAGCATGGCGCGGTAATTAGCTTGAGGAAACATAGTATTAAAACT
CCGGACACAGGCAAAGGCATCATTTCTAATAATATCAAAGAGAGAGGCAT
CTGAGGCTGAAACTTCCTGAACTAAAGTCATATTCCATGGGATCTCTCAC
CTAAATTTATCCCCAATGGAAAAACCACATGATGCATTAAATTGAAGCCT
TTTAGTGAGAAGTTTATTGGAAACACTTGCATTTAATAATTATTTAAATT
CAATACAATGTAACTATATCATACCACATACAGGAAGAGAAGAAGGCATC
ACATCACGGCAAGAGTTTTGACGATTGGATGCGTGAAAAAGAAGATCGCG
CTcgacaagaaaaagaaaaacatgaacaagaacaaaaagaaaaggaaaga
aaagaagCTGAAGAAAAGGCTAAACAACAAGGTTGGTGGCTGTCTGTAGA
CCTCTGTTTATAGCCTACTTGCAAGGTTTTGTGGCTGCCTGTAGACCATT
GTTTGTAGCCTACTCGTATAGGTTTAGTGAATGTCTGTAGAACTTTGTTT
GTAACCTACTTGCATAGGTTTTGTGGCTGCCTGTAGACCTTTGTTTGTAG
CCTACTCGTATAAGTTTAGTGCTGCCTGTAGACCTTTGTTTCTAGCCTAC
TTACAAGGTTTTGTGGCTGCCTGTAGACCATTGTCTGTAGCCTACTCGTA
AAGGTTTAGTGAATGTCTGTAGACATTTGTTTATAACCTACTTGCATAGG
TTTTGTGGCTGCATGTAGACATTTGTTTATAGCCTACTTGTAAAGGTTTG
CAAGACTATGTCAGGTAGGTTAGATATTACAACAGTTATGAACTGTGATG
TTTTAAGAAAATACTTAGTCAAGGGTAAATTTGATATTGATTATGGTAAT
ATCAGCAGGTAATCTGTCAAATGTAAAAGACCCCTATAAAGCGCAGAGAA
GAGGGTTAGTGGTTTTATTCCAAAGTTTGTATAGAATGGTAATGTCCTTT
ctttctaaatattttcaaaaaagtaccCGAgtaataacttttgacttatt
ttttatctttacaACCCTCGACTACCAGTACACTGGGGTCGTTTATTACA
TCCGTTTTATACAGTAATGTGCATGTTATTTGATAATGCGACATATGCCA
CGTGAAAATGTTAATAGTTTATACAATAGTGATATTATTAACGTCATAAG
TTCTCCTTGCCATACCCCTCTCTTTCTCTTATATTAAGCCGTCCAGCGTG
CTAGACTACCCTTCAAGGGACTTCCTAAAGAAGGTGAAAGCCTTGGTTAG
GGATCTCTAGATTCCATTCTCCAGGGGTGAAAACATAAGTATCTCAACAA
TGATTATTATCATCTTAAGGTAAATCATTCGAGAAATGGGTGAAAGAGAA
GGCAGAGTATGACCGTCTATTGAAACAACAACATGAACAAGACgctaaag
aaaatcaaaagcaaCAGAAGACGTTGAAAGGGAAAACTTTTGAAGATTGG
CAAAAAGAAATGGAAGTAAAACGAAAGCAGGATattgaagaaaagaaaac
gAAAGAGACCAAGGTATAAAACaggaatctttaacctttctcaagcaaga
aaaagtgaagccttaaaaagaTTTGCGCTGTATTTAGAATGACGTATTGA
ATCTAGACTTTTCTCcgtttttacatatttttcagAATCTGACGAtaggt
tttactttcaatctggtgtttgtgtgaaaaccacgcgggtcacATGTTTT
TGATGGGAAAGTGGATTCATTTCCCATCTAACAGTTTCGGATCTAGCCCC
TTCGGAGCTTTGAGATCAATGGTCAGAGCAAAGTTCTTTGTCTCAGACGG
GAAAGGAGTTTAAGGCAAAACTCTTCAAATTTTACAGACTGTTTTTTCAT
TTGGAGATAGAAAAGCTCCTTTTTGCTTAGACGGAAATCCGTTTGACACG
GGAGACTGATAAAACGACATCATTCTCTACCGTAGAATTGACGTTGGACC
CTAAACTGATCGTTTATGACTTAAAAGAAATcgtaataaaaacattttcc
taAAAGATTGAACGTTCTCAGCAGCGTAGATACGAGTGAAGGAACATATT
GCTTAGGAGAGCAGATTGAAACGACAGAGTAATTATGTTTTTATACTACG
AATAGGTAAGTGCTTTGttgtaaaaatctgctctcctacgcagatcgttc
ttcacccctgtctacgctTCCGGTTCTtttcctaaatattttcaggaaaa
ggAAAAGCAAGAAGAAGCAAAAGTACGGCGCCGAAAAGAATCATCGGCAA
AATTCCAACAATGGTTACTGGATAAAGAGAAATTAGCTTTGGAAAAAGAA
ATGCAAGAATTGAAGAAACGAAAAGTATCGACCGCTAAAAATGCTACACG
TAAAGCAAGTACAATGAAAAAGCCTGCTCCGAAATAATAACATTGTGTCT
TCAtcaaagagaaaattttgatttcataggAATCCACTGAAACATGTAGA
ACCTTGACTGCTAATCTGCTTAATCGATCAACGGCTAAGTCAAAGTAAGG
TATTGAACCATACAGGTTTTACTGTAAATAAATATTACTGATTTTAAGAA
TTCGATTCCTTCATTATCAACTACTGTTTGTTACCTTCTGGTGTCATGGT
AGCACCTAATTCCCTAAACTGGTACGGTGAAAATGTAGAGCTTTTCAGTT
TGTGACGATTTTTTCCAATAGCAAATATCGATGCACCAAAAGGAAGAAAA
TCATTTCATAAGCTAAATTTATTCTGCTTTATGCAGTGGCCAAAGCGAAG
TTCTTTTTGTCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049482-exon-scaffold_16-1491911889:254827..255074 | TCONS_00049482-exon-scaffold_16-1491911889:254827..255074 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1510915933:254827..255074 | TCONS_00049482-exon-scaffold_16-1510915933:254827..255074 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1575043694:254827..255074 | TCONS_00049482-exon-scaffold_16-1575043694:254827..255074 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1491911889:256693..256938 | TCONS_00049482-exon-scaffold_16-1491911889:256693..256938 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1510915933:256693..256938 | TCONS_00049482-exon-scaffold_16-1510915933:256693..256938 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1575043694:256693..256938 | TCONS_00049482-exon-scaffold_16-1575043694:256693..256938 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1491911889:257131..257285 | TCONS_00049482-exon-scaffold_16-1491911889:257131..257285 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1510915933:257131..257285 | TCONS_00049482-exon-scaffold_16-1510915933:257131..257285 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1575043694:257131..257285 | TCONS_00049482-exon-scaffold_16-1575043694:257131..257285 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1491911889:257753..257934 | TCONS_00049482-exon-scaffold_16-1491911889:257753..257934 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1510915933:257753..257934 | TCONS_00049482-exon-scaffold_16-1510915933:257753..257934 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1575043694:257753..257934 | TCONS_00049482-exon-scaffold_16-1575043694:257753..257934 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1491911889:259660..259807 | TCONS_00049482-exon-scaffold_16-1491911889:259660..259807 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1510915933:259660..259807 | TCONS_00049482-exon-scaffold_16-1510915933:259660..259807 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1575043694:259660..259807 | TCONS_00049482-exon-scaffold_16-1575043694:259660..259807 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1491911889:260746..260939 | TCONS_00049482-exon-scaffold_16-1491911889:260746..260939 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1510915933:260746..260939 | TCONS_00049482-exon-scaffold_16-1510915933:260746..260939 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1575043694:260746..260939 | TCONS_00049482-exon-scaffold_16-1575043694:260746..260939 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1491911889:261622..262191 | TCONS_00049482-exon-scaffold_16-1491911889:261622..262191 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1510915933:261622..262191 | TCONS_00049482-exon-scaffold_16-1510915933:261622..262191 | Clytia hemisphaerica | exon |
TCONS_00049482-exon-scaffold_16-1575043694:261622..262191 | TCONS_00049482-exon-scaffold_16-1575043694:261622..262191 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_16 | supercontig | scaffold_16:254827..262191 + |
Blast
The following BLAST results are available for this feature:
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