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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049481 ID=TCONS_00049481|Name=TCONS_00049481|organism=Clytia hemisphaerica|type=transcript|length=728bp CTTAGAATGGTCGAATGATTAGTTTGCTTCAAGACTTTAACGAGTCAGag gGAAAACTATACATCATCAGTGAGCTCCTTCCATTAGTTAGAAACAAATA ATGGTTGACAATCTAAATAGTCAGCAAAATGTTGGTATTGATAAAAACAA ATGTCGAGAATGGATGAAAATTGCCAGATCTGTTCAAGTGTGTCTCAAAC AAAACTTAATTGATATTCTACACGATCCTGAGATAGATGGTCTTCCAAAG AATTCAAAGGACCGAGACGACATTCTAAACAAATATCGTCaagtaaatga aaatgaattaAAAGAGATGATTATGTTTGGGCAACTAGATTTCATTTCAA AGGATGGACAATCTCAAATCAGGAGATTATGCATTCCAAATCTGGTTTAC TTAATCAATCGGTTAACCAATATTGATAAGATAGATTCTGGTAAGTTGGC TGGTCTTTCCAGTGCGTTGGAAATCCATCAAGATATTTATAATGGGTCAA TTACTTCCATGGGAGAAGAGAATTTCCAGAACCTTTGGAAACGAATCTAT GATGTATTGATTGTTCTGGGATACTCTGAGATACCAGTTTTCCACTATCT GAAAGAGAAAGCATCGCTAGATGAGATAGATACTGAACAAATTGAGGTTC TAGATGAACGTTGCAGATCTTTAAAGGCCCTGGATAACGATATCGAAATA AAACAAAGAGAAATGAGCTTTTTAATGG Run BLAST on NCBI protein sequence of TCONS_00049481-protein >TCONS_00049481-protein ID=TCONS_00049481-protein|Name=TCONS_00049481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MVDNLNSQQNVGIDKNKCREWMKIARSVQVCLKQNLIDILHDPEIDGLPK NSKDRDDILNKYRQVNENELKEMIMFGQLDFISKDGQSQIRRLCIPNLVY LINRLTNIDKIDSGKLAGLSSALEIHQDIYNGSITSMGEENFQNLWKRIY DVLIVLGYSEIPVFHYLKEKASLDEIDTEQIEVLDERCRSLKALDNDIEI KQREMSFLM Run BLAST on NCBI transcript from alignment at scaffold_16:193948..194913+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049481 ID=TCONS_00049481|Name=TCONS_00049481|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at scaffold_16:193948..194913+ (Clytia hemisphaerica) CTTAGAATGGTCGAATGATTAGTTTGCTTCAAGACTTTAACGAGTCAGGT
AAGTCGACTAAAAACTGAATTAATGAATTTTGACGACATTTAATTTAAGT
TTTGGTGGACTTTGTGTCATACTGGTCTGTACCACTCGTCGCACAGGCAa
ttctttatcttttgaaaaatgtttctccTGTAGGTACATGTGTAATTTGG
CTATGAAAGAAGGCTATCATAACTATTGGCGAGCATTTGCGTAAGAAATG
AATGGTTATGCTatcttgatattttttgatttttagaggGAAAACTATAC
ATCATCAGTGAGCTCCTTCCATTAGTTAGAAACAAATAATGGTTGACAAT
CTAAATAGTCAGCAAAATGTTGGTATTGATAAAAACAAATGTCGAGAATG
GATGAAAATTGCCAGATCTGTTCAAGTGTGTCTCAAACAAAACTTAATTG
ATATTCTACACGATCCTGAGATAGATGGTCTTCCAAAGAATTCAAAGGAC
CGAGACGACATTCTAAACAAATATCGTCaagtaaatgaaaatgaattaAA
AGAGATGATTATGTTTGGGCAACTAGATTTCATTTCAAAGGATGGACAAT
CTCAAATCAGGAGATTATGCATTCCAAATCTGGTTTACTTAATCAATCGG
TTAACCAATATTGATAAGATAGATTCTGGTAAGTTGGCTGGTCTTTCCAG
TGCGTTGGAAATCCATCAAGATATTTATAATGGGTCAATTACTTCCATGG
GAGAAGAGAATTTCCAGAACCTTTGGAAACGAATCTATGATGTATTGATT
GTTCTGGGATACTCTGAGATACCAGTTTTCCACTATCTGAAAGAGAAAGC
ATCGCTAGATGAGATAGATACTGAACAAATTGAGGTTCTAGATGAACGTT
GCAGATCTTTAAAGGCCCTGGATAACGATATCGAAATAAAACAAAGAGAA
ATGAGCTTTTTAATGG Coding sequence (CDS) from alignment at scaffold_16:193948..194913+ >TCONS_00049481 ID=TCONS_00049481|Name=TCONS_00049481|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_16:193948..194913+ (Clytia hemisphaerica) ATGGTTGACAATCTAAATAGTCAGCAAAATGTTGGTATTGATAAAAACAA ATGTCGAGAATGGATGAAAATTGCCAGATCTGTTCAAGTGTGTCTCAAAC AAAACTTAATTGATATTCTACACGATCCTGAGATAGATGGTCTTCCAAAG AATTCAAAGGACCGAGACGACATTCTAAACAAATATCGTCaagtaaatga aaatgaattaAAAGAGATGATTATGTTTGGGCAACTAGATTTCATTTCAA AGGATGGACAATCTCAAATCAGGAGATTATGCATTCCAAATCTGGTTTAC TTAATCAATCGGTTAACCAATATTGATAAGATAGATTCTGGTAAGTTGGC TGGTCTTTCCAGTGCGTTGGAAATCCATCAAGATATTTATAATGGGTCAA TTACTTCCATGGGAGAAGAGAATTTCCAGAACCTTTGGAAACGAATCTAT GATGTATTGATTGTTCTGGGATACTCTGAGATACCAGTTTTCCACTATCT GAAAGAGAAAGCATCGCTAGATGAGATAGATACTGAACAAATTGAGGTTC TAGATGAACGTTGCAGATCTTTAAAGGCCCTGGATAACGATATCGAAATA AAACAAAGAGAAATGAGCTTTTTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049481-exon-scaffold_16-1491911889:193948..193995 | TCONS_00049481-exon-scaffold_16-1491911889:193948..193995 | Clytia hemisphaerica | exon |
TCONS_00049481-exon-scaffold_16-1510915933:193948..193995 | TCONS_00049481-exon-scaffold_16-1510915933:193948..193995 | Clytia hemisphaerica | exon |
TCONS_00049481-exon-scaffold_16-1575043694:193948..193995 | TCONS_00049481-exon-scaffold_16-1575043694:193948..193995 | Clytia hemisphaerica | exon |
TCONS_00049481-exon-scaffold_16-1491911889:194234..194913 | TCONS_00049481-exon-scaffold_16-1491911889:194234..194913 | Clytia hemisphaerica | exon |
TCONS_00049481-exon-scaffold_16-1510915933:194234..194913 | TCONS_00049481-exon-scaffold_16-1510915933:194234..194913 | Clytia hemisphaerica | exon |
TCONS_00049481-exon-scaffold_16-1575043694:194234..194913 | TCONS_00049481-exon-scaffold_16-1575043694:194234..194913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_16 | supercontig | scaffold_16:193948..194913 + |
Blast
The following BLAST results are available for this feature:
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