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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049479 ID=TCONS_00049479|Name=TCONS_00049479|organism=Clytia hemisphaerica|type=transcript|length=755bp
GGGACAGACGATGACGTATCAGTGTACATTAGTCACTACTCAAACAGCCA
ATCAGATGAAGAAGAAATTCTATCACTAGTTCATTATTTGATGTCTTTGG
ATCTACAATGTCACGTGGATTTGTTGAACCAAGTAGAGATTAACAACATG
GGAGGATTGGCAAATTGGATTCCTGAGCATATTTTATCTGTCAAGAAGAT
TTTGATGATCATTTCAAAAGAATATCTTCAGGCATTGAATCTGCAAGGAG
TAGATGAAAACGATGCCCAGGTCTGCAAAATACACGCTGAGTTCGGTTAC
ATCAAAAGTATTCTATATCATTCATGTACTAAAGCATCACCAAGACTTGT
CCTTTTATTTGGGAGAGGTGTAAATTTTCAGGACCTACCGAATGAACTTC
AAGGTCTACCATATTGTTATTATCCTAAACGTTTCAAAATACCGGAAGAC
GAAAATTGCCGGAAACTTCTTGGTATGTTGAAAGATGCAGAACCATTGAA
ATTGTCTACAGATTTTATTTCAAGAGCTTCTAGTTCATTTAGTTCTAATG
ATTTTGAACTTGCTGAAACTGTTTTATGACATAATTTTGAATAATTGTAG
TACTTTAATAATTTAAACTATCAAACGATTGCGATCAAACATATTGATAT
AgcgaaaatgaaatattgaagaTTGTTCAAAGATTGTTTTATTCCAGATA
AGGAAATGGCAAGAGTGTCAAGATTCATCTTTTtcgacacccccttctca
cagac Run BLAST on NCBI protein sequence of TCONS_00049479-protein >TCONS_00049479-protein ID=TCONS_00049479-protein|Name=TCONS_00049479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
GTDDDVSVYISHYSNSQSDEEEILSLVHYLMSLDLQCHVDLLNQVEINNM
GGLANWIPEHILSVKKILMIISKEYLQALNLQGVDENDAQVCKIHAEFGY
IKSILYHSCTKASPRLVLLFGRGVNFQDLPNELQGLPYCYYPKRFKIPED
ENCRKLLGMLKDAEPLKLSTDFISRASSSFSSNDFELAETVL Run BLAST on NCBI transcript from alignment at scaffold_16:182991..184362+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049479 ID=TCONS_00049479|Name=TCONS_00049479|organism=Clytia hemisphaerica|type=transcript|length=1372bp|location=Sequence derived from alignment at scaffold_16:182991..184362+ (Clytia hemisphaerica)
GGGACAGACGATGACGTATCAGTGTACATTAGTCACTACTCAAACAGCCA
ATCAGATGAAGAAGAAATTCTATCACTAGTTCATTATTTGATGTCTTTGG
ATCTACAATGTCACGTGGATTTGTTGAACCAAGTAGAGATTAACAACATG
GGAGGATTGGCAAATTGGATTCCTGAGCATATTTTATCTGTCAAGAAGAT
TTTGATGATCATTTCAAAAGAATATCTTCAGGTTTTTTCTCaatcacacc
cccttctcacagacctggtaggattttttcagcagCTAGTGGGGTTAAAA
ATAACGGTCTAAATCAATGGGGattaatatttccatattttctaTGGcta
gggatttcaattcttttgttttcaagtcagaaaattcagtggggattgga
aaattagcataatattttgcagtgagaattggtttatttgattattcaCA
GTGGGGACAAAGATTGGAGGATTATTTTcaaccggggacgatatttttaa
accaatttttccagtgggtttgtgagaagggggtgtttaatctcgtaccc
agagccattTTATACCACTTTGTTTCATTATTACTGATGGGCATGATATA
TTTCGTGAGTGCTAGcagaatcattaaaaaaactATAAGGGACTAGATAC
GAGTTCAGTTGGTTCCGACATTTCTTGACATAGTTAACAGTTTATcgtgt
caaaaaaatttatgattGAACCATTCGTTGTGCAAAACCCCCCAGCAGac
acttttcttatttttttcagccGTGGAAATGGAGCTAAACCAGCAGTTTG
TTGTATTCAAAACTACAGTTTAATATCAATCCTTGTTTGAATTTTTAGGC
ATTGAATCTGCAAGGAGTAGATGAAAACGATGCCCAGGTCTGCAAAATAC
ACGCTGAGTTCGGTTACATCAAAAGTATTCTATATCATTCATGTACTAAA
GCATCACCAAGACTTGTCCTTTTATTTGGGAGAGGTGTAAATTTTCAGGA
CCTACCGAATGAACTTCAAGGTCTACCATATTGTTATTATCCTAAACGTT
TCAAAATACCGGAAGACGAAAATTGCCGGAAACTTCTTGGTATGTTGAAA
GATGCAGAACCATTGAAATTGTCTACAGATTTTATTTCAAGAGCTTCTAG
TTCATTTAGTTCTAATGATTTTGAACTTGCTGAAACTGTTTTATGACATA
ATTTTGAATAATTGTAGTACTTTAATAATTTAAACTATCAAACGATTGCG
ATCAAACATATTGATATAgcgaaaatgaaatattgaagaTTGTTCAAAGA
TTGTTTTATTCCAGATAAGGAAATGGCAAGAGTGTCAAGATTCATCTTTT
tcgacacccccttctcacagac Coding sequence (CDS) from alignment at scaffold_16:182991..184362+ >TCONS_00049479 ID=TCONS_00049479|Name=TCONS_00049479|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_16:182991..184362+ (Clytia hemisphaerica)
GGGACAGACGATGACGTATCAGTGTACATTAGTCACTACTCAAACAGCCA
ATCAGATGAAGAAGAAATTCTATCACTAGTTCATTATTTGATGTCTTTGG
ATCTACAATGTCACGTGGATTTGTTGAACCAAGTAGAGATTAACAACATG
GGAGGATTGGCAAATTGGATTCCTGAGCATATTTTATCTGTCAAGAAGAT
TTTGATGATCATTTCAAAAGAATATCTTCAGGCATTGAATCTGCAAGGAG
TAGATGAAAACGATGCCCAGGTCTGCAAAATACACGCTGAGTTCGGTTAC
ATCAAAAGTATTCTATATCATTCATGTACTAAAGCATCACCAAGACTTGT
CCTTTTATTTGGGAGAGGTGTAAATTTTCAGGACCTACCGAATGAACTTC
AAGGTCTACCATATTGTTATTATCCTAAACGTTTCAAAATACCGGAAGAC
GAAAATTGCCGGAAACTTCTTGGTATGTTGAAAGATGCAGAACCATTGAA
ATTGTCTACAGATTTTATTTCAAGAGCTTCTAGTTCATTTAGTTCTAATG
ATTTTGAACTTGCTGAAACTGTTTTATGAGGGACAGACGATGACGTATCA
GTGTACATTAGTCACTACTCAAACAGCCAATCAGATGAAGAAGAAATTCT
ATCACTAGTTCATTATTTGATGTCTTTGGATCTACAATGTCACGTGGATT
TGTTGAACCAAGTAGAGATTAACAACATGGGAGGATTGGCAAATTGGATT
CCTGAGCATATTTTATCTGTCAAGAAGATTTTGATGATCATTTCAAAAGA
ATATCTTCAGGCATTGAATCTGCAAGGAGTAGATGAAAACGATGCCCAGG
TCTGCAAAATACACGCTGAGTTCGGTTACATCAAAAGTATTCTATATCAT
TCATGTACTAAAGCATCACCAAGACTTGTCCTTTTATTTGGGAGAGGTGT
AAATTTTCAGGACCTACCGAATGAACTTCAAGGTCTACCATATTGTTATT
ATCCTAAACGTTTCAAAATACCGGAAGACGAAAATTGCCGGAAACTTCTT
GGTATGTTGAAAGATGCAGAACCATTGAAATTGTCTACAGATTTTATTTC
AAGAGCTTCTAGTTCATTTAGTTCTAATGATTTTGAACTTGCTGAAACTG
TTTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049479-exon-scaffold_16-1491911889:182991..183221 | TCONS_00049479-exon-scaffold_16-1491911889:182991..183221 | Clytia hemisphaerica | exon |
| TCONS_00049479-exon-scaffold_16-1510915933:182991..183221 | TCONS_00049479-exon-scaffold_16-1510915933:182991..183221 | Clytia hemisphaerica | exon |
| TCONS_00049479-exon-scaffold_16-1575043694:182991..183221 | TCONS_00049479-exon-scaffold_16-1575043694:182991..183221 | Clytia hemisphaerica | exon |
| TCONS_00049479-exon-scaffold_16-1491911889:183839..184362 | TCONS_00049479-exon-scaffold_16-1491911889:183839..184362 | Clytia hemisphaerica | exon |
| TCONS_00049479-exon-scaffold_16-1510915933:183839..184362 | TCONS_00049479-exon-scaffold_16-1510915933:183839..184362 | Clytia hemisphaerica | exon |
| TCONS_00049479-exon-scaffold_16-1575043694:183839..184362 | TCONS_00049479-exon-scaffold_16-1575043694:183839..184362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:182991..184362 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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