TCONS_00049478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049478
Unique NameTCONS_00049478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length855

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049478 ID=TCONS_00049478|Name=TCONS_00049478|organism=Clytia hemisphaerica|type=transcript|length=855bp
AAGCAAACATATCGAAGTGAGATTTTCAAGTACTTTTTTCCATCTCTCTT
ATAATTTCAATCTCTGACCTCTTTGAAGTCATTCTCGTGAGCTGTttaaa
aaactgtaaaaattGTATTTGTGTTGTCTAGAAGCAGTTTTTTATTGGTT
CTGAGATGGTATCCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTG
ATGTTATGGACAAACACCTTTGTCAATGCACCAAACAGATTATCATCAAA
ATGCACCTGGGCCACATGGACAAACCTTAACAacgaaaacatcaaatttt
caaaagattgctTTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAA
GtCGGAGATTACTATTTGGTTCAATATTCACCCATGGGTTATGACAATTG
CACTGAATATAATGTCACCAGAATCGAGaaatattttgAGTTCACATTGA
AAGATGGTTTTCAAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATG
CAAGGCAGCACAATACTATGGAGACACACTTTGAATATTGGGTCATGTCC
TTTTACCGGCTCCTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTA
AAGAAATCACCAAACCACGGACCAGAATACGTCATTGTGTTCAAAATACA
GACCCGAATAACAGATTATCGTTACATCAATGTGAAGGGGACCAACCTAT
AGAACAACAAAGCTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTA
CAGACACTACAATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGG
ACCAATCAAATCGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAAC
GCTTA
Run BLAST on NCBI

protein sequence of TCONS_00049478-protein

>TCONS_00049478-protein ID=TCONS_00049478-protein|Name=TCONS_00049478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MVSRLTITLVIFYEVMLWTNTFVNAPNRLSSKCTWATWTNLNNENIKFSK
DCFSNGMRVTSYEVKVGDYYLVQYSPMGYDNCTEYNVTRIEKYFEFTLKD
GFQRDLNYQLKVQAMQGSTILWRHTLNIGSCPFTGSWSSWSSWDSCYCKE
ITKPRTRIRHCVQNTDPNNRLSLHQCEGDQPIEQQSCYLTCRPFLDETTD
TTIQPKSAASSQNVWTNQIGVIFGGSATFCITL
Run BLAST on NCBI

transcript from alignment at scaffold_16:176222..182075+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049478 ID=TCONS_00049478|Name=TCONS_00049478|organism=Clytia hemisphaerica|type=transcript|length=5854bp|location=Sequence derived from alignment at scaffold_16:176222..182075+ (Clytia hemisphaerica)
AAGCAAACATATCGAAGTGAGATTTTCAAGTACTTTTTTCCATCTCTCTT
ATAATTTCAATCTCTGACCTCTTTGAAGTCATTCTCGTGAGCTGTttaaa
aaactgtaaaaattGTATTTGTGTTGTCTAGAAGCAGTTTTTTATTGGTT
CTGAGATGGTATCCAGGCTAACGATAACACTTGTCATTTTCTATGTAAgt
tgtttcttctttttgattctcatgtttttaaggattttccATATTTTATC
TTTTGCCTGGAAAACCCTTGAAAACACAATaaacagatccaggcttttag
gcctttttaggagtaggagttttacgctcgaaacgaaggaagatatgacg
tagccttgGAAAACCCTTGAAAACATGTGTTCTAAATCTTGATTTTAGGA
TTGCAGGTTTCCAATATTTCAACAGATTTGCCGTTCTGCATTCCCACGCT
TTAGTTTTGCTTCAGCCAATCACAGCACCTTTTCAGAGAGTGGGTGGTTG
AGATTCTCCGTCAGAGTACACCGATACACTTTGATCATAACAGTTAAACT
TTTATACGAATCAGTCAATTTTTGTTGAGgcttttctcgaaatttttttc
gtTAGAATTGTTCTTATGGTGTTCttcattaaaaaagaagagcAGAGATT
ACAATagtctctttttcttttatcagaataatttttataagaacaacaag
gctcaaaaatgccaaaaaataagaacaatttaagcaAGAACAACCCTCAG
CCTGGAATGACtgaattttgggcaaattaaGGGTCAAAAcggtaaaataa
aaagagtGTGTTTAGGTTTAGTACCCTTTCTTTACTTCTTTTACTTACTT
TGACTAATTTCAAACTTAGCTATTGCAGGATCAGCAaattattctttaaa
aaagaacaGTGTACCCAAACATATAATGGGAAACGATTAGACTGAAATGC
TGCAACGTTTCAATAAATCACGACGAAAAGctaaaactatttaaataaAA
GATTGCATCTTTTCACCATGAACACACCTAATAAATAACAGTAGCACATG
CGAAATATTTTTCCTGTGTTTTAAGTTTGATGTTACTTCAATTCTTTTCT
TTAGGAGGTGATGTTATGGACAAACACCTTTGTCAATGCACCAAACAGTA
AGTCACTTACTGCTATAGCTTCGAACAAACGGCTAGGGTGGGCTAGGGcg
tttatcaactttttttggtttttaggaggggcgttcaTTAAATAATTTAT
AACAAATGTCACCTTAATAAAGTGAATGGGAACCTTATTTTGTCATAGAA
TAATAGATGTATCGCTGTTTGAAAAAGTGCTTAGCTTGCAAACACATTTG
GTTGTTAAAACGGGTGTATTTCTTCGATGGAACAGTCACTTTCgttcggg
gttgtggatggcaaacaagtcgttctttatgaaatttgtcgttctttttg
tctactTTTAGTAATGCgcgattctttagataaacccctcACCAATATGA
TTAATCACTCATTAATGGACCCTTACCACACCGATTAAAGCGGTTCAATT
AGTACACTAAAATATTCGATCAGTAAGATactcaaaaatatttgtttcta
aATCTAAACTACAACGCCCTCGCACCATGTAGGATTGTACATGCTATGAT
GGGTTTATGCAATATGGCTCATCTAAAACCATTTATAACGATATTGCTTT
ATGATGGGATCTCTCTTGTCATTATTTGATCATCATAAAATCATCTTAAA
ATTCATGCAGGATATATTCTCGTGTTTTTGAGGTCAATATATCTGCTTCC
TTTCACGTAATGATGAACGCGCGAATTTGATATCTTGATCTCGCATCATT
TCTTGTTAGAATCCACCATTTTCCTTCCttccttctttcttttttcctcG
TCAATTTTTAACCAATAAAACTAGGAAGTCACCCCGAAATCATGCAATAC
GatacaaaatctttcaaattcaacttCTATGTACTCTTTAAGCGGGCAAT
CGCAACACCGAGGTCCGTGCGCCACTGGTTGGGGTAAGGATAGGCACTAT
ACACTTGATTTTTTTGTGGAAATAGCTTAACTTTAGCGAAAGACATTTTG
AATTGTAGTTTTTCATGCTTGTGGGAGCCTCATTCTTCGGTCACATCAAT
ATGAATCAAGGCCTTTTAACAAATCAAGGGGTCGGATTTAAATAAGTCAT
CCTTCGGCGAAGACATTAGTGTTACATCTTTATAGTCACTATATTTTAAA
CAGCTCCAGTTTGCAAATGAAAATGTGGCTTTTACTCTGATCATTTTCCA
AAGTATTTAATTCTTCCTTCCCATGTTATAATATTACCAGTGGGTAGTAG
TGTCATAAAATCACAAGAGTCAGTAAACTAATTGAATAACGTATACGGGT
ATGAGGTGCAAGTTTTTGTATATCTCTTCATTCTTCTGATAATGTTTAGG
ATTATCATCAAAATGCACCTGGGCCACATGGACAAACCTTAACAacgaaa
acatcaaattttcaaaagattgctTTTCAAATGGAATGAGGGTCACCTCT
TATGAGGTCAAAGGTAAACATTATATTATAATTTTCTACAACATATTTTC
CTCCTGTACAAGTTTCTTTCTGACCCTTGATTAAAAGATGgatagaaaat
atttcaatctgGCACCCAACATAAAATGAATGTTCTTGAGATTTGGTAAC
GAATTTCACATAAAATTGTTACGAAAATTGCAGAAAATCTGAACCAGTCT
CGTACCCAGAGCTACTTGCttgctttttgattttactgatggacgttgGT
GCCTTTTATAAGGGCTATCAGTGTCAGAGTCATAAAGTTCGAGTTTGAGG
TCTGAGCACCAGGACTGGTTATCAGTACATTTAAGTGAATCTTCAAATTC
ATGGATATTTTTTTGCTCCTTTAGAACCTTATCAGAAGCGGCTGTCAATA
TAATCGGGATATGACACAGATTACCATCTTTTTCATTTACCctttaaact
atttttctttcagtCGGAGATTACTATTTGGTTCAATATTCACCCATGGG
TTATGACAATTGCACTGAATATAATGTCACCAGAATCGAGGTTAGTTGGC
TGATAGTTTATACGATTGaaatcaaatttacaaatttttagattgACTAG
TCAATTTTATTGGACATCTAAATGGTGCATCTTTTCCGTTCCTTTGCGTG
TACGATTTCGTACCCAGAGTCTCTCGCACCATTTTCTTGATTTAACTGAA
ACGATTTGACATGAAACGCaatcaaaatcttaaaagagtaaactaaggga
ctgggttcaaGTTTGCAGTTTAAATATTGTCTAATTTGAAGTTaaacgaa
aaacattttttcccaaagtttcttgtttttttaagCATTCATCAAATTGG
TTCAGGTACGAAAATACGTAACAAtcctttaactttttttcagaaatatt
ttgAGTTCACATTGAAAGATGGTTTTCAAAGAGACCTCAATTACCAACTA
AAGGTTAGATGTTAGATGAGTACCAGCCACAGCGATCTGTTATcagattt
aaaattttcacaaatgtaatttttgtaaaaagttttggtTATTAATATAA
TCTTTTTTATCCTTGTTCTGCTAAGAATCAGTTTCTCCAGTGAAAATTTT
ATGCCTATAGCATAAACCCAGTAGGAATTATAGTGATTGCGATTTGAGGG
ATCTAGGAGGGGATTTATAGGGATAGAGGGATcccgagaaaacgaaagtt
ctCTGgttaagaaaaactaaaaaagatttttgggaaaaaattattttggt
gTATTTTTTTCGTTAAATGGCATTTATacaaatttttatctttatatGAT
TACTACAACTCGAATTATGCAAAGAAATAAGtcaaaatttccccgatttt
tcatacTTCCAGGACCAGATTGCGGTGAGTAATGATACAGGCATATGAGC
GTTCGAACCCCGCTTTCTATTGCATGTCTAATAACTCAAAAATAACTTAT
AATCAACTCTCTACTATTTGAAATTCCCATAActggaaaatatttcttta
cacTACTAGCTTGGCCGAGTTATATAGAGTGGTTATCGTTTTGTCTGGGA
TCACCAGATTGTATCTTCTTATCCTTTGTAGGTTCAAGCGATGCAAGGCA
GCACAATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTGTCAG
tattttttttcgtcatttaGTTACAATAATGTTTTTTAACTTTGTCTTCA
TATTAAATGAATGCGAAACCTTTTGAAGCAAGGAGAGTCAAAGTTAGCAA
GCGAAAATTTTTGAGGATAAACTGAGGTAAATTCGGGAACTGTAAAGAGC
TATAAGGAACCATTGATCCACGATTATCCAATATTTTTTGAACGCTTTGG
ACGTTAGATGGATCTTGAAACAACGATGTGCCATCTTGAACGAGTCTGAT
ATTGTATAATTTTGGACTCAATTTCTTTTAGTTACCGGCTCCTGGTCATC
TTGGAGCTCTTGGGACTCATGTTATTGTAAAGAAATCACCAAACCACGGA
CCAGAATACGTCATTGTGTTCAAAATACAGACCCGAATAACAGATTATCG
TTACATCAATGTGAAGGGGACCAACCTATAGAACAACAAAGCTGTTATTT
AACATGTCGTCCATTTCTCGGTATGATTGCCTCTACTCACTGATTCCATT
TGACGGGGCAAATGGACCCCTATTGAGTGGGAATGTATGACCCCCGTCCT
GTCCGTTTTTTGGGATGAAAAAAAGGTGGCTTAATTTTCCaaactacgga
tttttttttctgaaatcttCACTGTaagttaaaatttgaaatttttggcg
TCCTGAAACCTTTTGTGGTCCTTAGTAAAATCTCCAAGTACTTTTGTCta
actattttcaaaattcaagataccttatcggggaaaacttcgtcggggaa
aagtggcgaaattttggacaagtgacgaatattttccccgacgaaaattt
tccctggccttaatgcgtttaccaactaccaacaagtgacgaatttttcc
ccgacgaaaattttccctggccttaatgcgtttaccaactaccaacaagt
gacgaatttttccccgacgaaaattttccccaacgAAGTTTTCCTCGATA
AGGTATTACAAGTTGAAATTCTTATTTAAAATGGGTTTTTACGCGGTTCT
TacgttgaatttctattgttttcttactTGTTTTTAGACCTTTAAACTTt
tagaaatcatgaaaaaatttcttgcGGGGCcagataaatttgataaaaaa
tgtgaatactgaaaattttattttattcattaattgacgtttcggtgtct
tctTTGCACCATGATCACAAGCAAATCActtttaactgaaaaaaaattta
ttgcgaATTGGAAACCTTAAATCTCATTTAAACAAAGCTATTGTCCTTTG
CGTTCAAAAACAGCGAGGGTCATTTTTGTAGAACATTTGTATTTTATGTG
TCTGTCTGATCATCCTTTAGCAAAAAGAGattcttataggaagtatattt
aTAGTagtctgtgattcagactaccATTTGTGCTGAACTATGAGCTGTTG
ACAGGCAGTAAATAAGGGTTTACCCCGAACCTATTTCAGCATATTTAGAC
CACTAAAGGTTNACCTATTTCAGCATATTCAGACCACTAAAGGTTGATGC
TTTAACCCTAAAGGTCGATGCTTTAACCTTTTTATTACAGACGAAACTAC
AGACACTACAATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGA
CCAATCAAATCGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACG
CTTA

Coding sequence (CDS) from alignment at scaffold_16:176222..182075+

>TCONS_00049478 ID=TCONS_00049478|Name=TCONS_00049478|organism=Clytia hemisphaerica|type=CDS|length=5592bp|location=Sequence derived from alignment at scaffold_16:176222..182075+ (Clytia hemisphaerica)
ATGGTATCCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTGATGTT
ATGGACAAACACCTTTGTCAATGCACCAAACAGATTATCATCAAAATGCA
CCTGGGCCACATGGACAAACCTTAACAacgaaaacatcaaattttcaaaa
gattgctTTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAAGtCGG
AGATTACTATTTGGTTCAATATTCACCCATGGGTTATGACAATTGCACTG
AATATAATGTCACCAGAATCGAGaaatattttgAGTTCACATTGAAAGAT
GGTTTTCAAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATGCAAGG
CAGCACAATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTTTA
CCGGCTCCTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTAAAGAA
ATCACCAAACCACGGACCAGAATACGTCATTGTGTTCAAAATACAGACCC
GAATAACAGATTATCGTTACATCAATGTGAAGGGGACCAACCTATAGAAC
AACAAAGCTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTACAGAC
ACTACAATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGACCAA
TCAAATCGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACGCTTA
TGGTATCCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTGATGTTA
TGGACAAACACCTTTGTCAATGCACCAAACAGATTATCATCAAAATGCAC
CTGGGCCACATGGACAAACCTTAACAacgaaaacatcaaattttcaaaag
attgctTTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAAGtCGGA
GATTACTATTTGGTTCAATATTCACCCATGGGTTATGACAATTGCACTGA
ATATAATGTCACCAGAATCGAGaaatattttgAGTTCACATTGAAAGATG
GTTTTCAAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATGCAAGGC
AGCACAATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTTTAC
CGGCTCCTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTAAAGAAA
TCACCAAACCACGGACCAGAATACGTCATTGTGTTCAAAATACAGACCCG
AATAACAGATTATCGTTACATCAATGTGAAGGGGACCAACCTATAGAACA
ACAAAGCTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTACAGACA
CTACAATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGACCAAT
CAAATCGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACGCTTAT
GGTATCCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTGATGTTAT
GGACAAACACCTTTGTCAATGCACCAAACAGATTATCATCAAAATGCACC
TGGGCCACATGGACAAACCTTAACAacgaaaacatcaaattttcaaaaga
ttgctTTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAAGtCGGAG
ATTACTATTTGGTTCAATATTCACCCATGGGTTATGACAATTGCACTGAA
TATAATGTCACCAGAATCGAGaaatattttgAGTTCACATTGAAAGATGG
TTTTCAAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATGCAAGGCA
GCACAATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTTTACC
GGCTCCTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTAAAGAAAT
CACCAAACCACGGACCAGAATACGTCATTGTGTTCAAAATACAGACCCGA
ATAACAGATTATCGTTACATCAATGTGAAGGGGACCAACCTATAGAACAA
CAAAGCTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTACAGACAC
TACAATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGACCAATC
AAATCGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACGCTTATG
GTATCCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTGATGTTATG
GACAAACACCTTTGTCAATGCACCAAACAGATTATCATCAAAATGCACCT
GGGCCACATGGACAAACCTTAACAacgaaaacatcaaattttcaaaagat
tgctTTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAAGtCGGAGA
TTACTATTTGGTTCAATATTCACCCATGGGTTATGACAATTGCACTGAAT
ATAATGTCACCAGAATCGAGaaatattttgAGTTCACATTGAAAGATGGT
TTTCAAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATGCAAGGCAG
CACAATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTTTACCG
GCTCCTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTAAAGAAATC
ACCAAACCACGGACCAGAATACGTCATTGTGTTCAAAATACAGACCCGAA
TAACAGATTATCGTTACATCAATGTGAAGGGGACCAACCTATAGAACAAC
AAAGCTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTACAGACACT
ACAATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGACCAATCA
AATCGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACGCTTATGG
TATCCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTGATGTTATGG
ACAAACACCTTTGTCAATGCACCAAACAGATTATCATCAAAATGCACCTG
GGCCACATGGACAAACCTTAACAacgaaaacatcaaattttcaaaagatt
gctTTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAAGtCGGAGAT
TACTATTTGGTTCAATATTCACCCATGGGTTATGACAATTGCACTGAATA
TAATGTCACCAGAATCGAGaaatattttgAGTTCACATTGAAAGATGGTT
TTCAAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATGCAAGGCAGC
ACAATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTTTACCGG
CTCCTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTAAAGAAATCA
CCAAACCACGGACCAGAATACGTCATTGTGTTCAAAATACAGACCCGAAT
AACAGATTATCGTTACATCAATGTGAAGGGGACCAACCTATAGAACAACA
AAGCTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTACAGACACTA
CAATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGACCAATCAA
ATCGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACGCTTATGGT
ATCCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTGATGTTATGGA
CAAACACCTTTGTCAATGCACCAAACAGATTATCATCAAAATGCACCTGG
GCCACATGGACAAACCTTAACAacgaaaacatcaaattttcaaaagattg
ctTTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAAGtCGGAGATT
ACTATTTGGTTCAATATTCACCCATGGGTTATGACAATTGCACTGAATAT
AATGTCACCAGAATCGAGaaatattttgAGTTCACATTGAAAGATGGTTT
TCAAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATGCAAGGCAGCA
CAATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTTTACCGGC
TCCTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTAAAGAAATCAC
CAAACCACGGACCAGAATACGTCATTGTGTTCAAAATACAGACCCGAATA
ACAGATTATCGTTACATCAATGTGAAGGGGACCAACCTATAGAACAACAA
AGCTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTACAGACACTAC
AATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGACCAATCAAA
TCGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACGCTTATGGTA
TCCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTGATGTTATGGAC
AAACACCTTTGTCAATGCACCAAACAGATTATCATCAAAATGCACCTGGG
CCACATGGACAAACCTTAACAacgaaaacatcaaattttcaaaagattgc
tTTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAAGtCGGAGATTA
CTATTTGGTTCAATATTCACCCATGGGTTATGACAATTGCACTGAATATA
ATGTCACCAGAATCGAGaaatattttgAGTTCACATTGAAAGATGGTTTT
CAAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATGCAAGGCAGCAC
AATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTTTACCGGCT
CCTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTAAAGAAATCACC
AAACCACGGACCAGAATACGTCATTGTGTTCAAAATACAGACCCGAATAA
CAGATTATCGTTACATCAATGTGAAGGGGACCAACCTATAGAACAACAAA
GCTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTACAGACACTACA
ATTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGACCAATCAAAT
CGGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACGCTTATGGTAT
CCAGGCTAACGATAACACTTGTCATTTTCTATGAGGTGATGTTATGGACA
AACACCTTTGTCAATGCACCAAACAGATTATCATCAAAATGCACCTGGGC
CACATGGACAAACCTTAACAacgaaaacatcaaattttcaaaagattgct
TTTCAAATGGAATGAGGGTCACCTCTTATGAGGTCAAAGtCGGAGATTAC
TATTTGGTTCAATATTCACCCATGGGTTATGACAATTGCACTGAATATAA
TGTCACCAGAATCGAGaaatattttgAGTTCACATTGAAAGATGGTTTTC
AAAGAGACCTCAATTACCAACTAAAGGTTCAAGCGATGCAAGGCAGCACA
ATACTATGGAGACACACTTTGAATATTGGGTCATGTCCTTTTACCGGCTC
CTGGTCATCTTGGAGCTCTTGGGACTCATGTTATTGTAAAGAAATCACCA
AACCACGGACCAGAATACGTCATTGTGTTCAAAATACAGACCCGAATAAC
AGATTATCGTTACATCAATGTGAAGGGGACCAACCTATAGAACAACAAAG
CTGTTATTTAACATGTCGTCCATTTCTCGACGAAACTACAGACACTACAA
TTCAACCAAAATCGGCAGCGTCATCTCAAAATGTTTGGACCAATCAAATC
GGTGTCATTTTCGGTGGGTCAGCAACGTTTTGTATAACGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031392XLOC_031392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049478-exon-scaffold_16-1491911889:176222..176415TCONS_00049478-exon-scaffold_16-1491911889:176222..176415Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1510915933:176222..176415TCONS_00049478-exon-scaffold_16-1510915933:176222..176415Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1575043694:176222..176415TCONS_00049478-exon-scaffold_16-1575043694:176222..176415Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1491911889:177326..177368TCONS_00049478-exon-scaffold_16-1491911889:177326..177368Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1510915933:177326..177368TCONS_00049478-exon-scaffold_16-1510915933:177326..177368Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1575043694:177326..177368TCONS_00049478-exon-scaffold_16-1575043694:177326..177368Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1491911889:178671..178784TCONS_00049478-exon-scaffold_16-1491911889:178671..178784Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1510915933:178671..178784TCONS_00049478-exon-scaffold_16-1510915933:178671..178784Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1575043694:178671..178784TCONS_00049478-exon-scaffold_16-1575043694:178671..178784Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1491911889:179235..179311TCONS_00049478-exon-scaffold_16-1491911889:179235..179311Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1510915933:179235..179311TCONS_00049478-exon-scaffold_16-1510915933:179235..179311Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1575043694:179235..179311TCONS_00049478-exon-scaffold_16-1575043694:179235..179311Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1491911889:179665..179724TCONS_00049478-exon-scaffold_16-1491911889:179665..179724Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1510915933:179665..179724TCONS_00049478-exon-scaffold_16-1510915933:179665..179724Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1575043694:179665..179724TCONS_00049478-exon-scaffold_16-1575043694:179665..179724Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1491911889:180353..180416TCONS_00049478-exon-scaffold_16-1491911889:180353..180416Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1510915933:180353..180416TCONS_00049478-exon-scaffold_16-1510915933:180353..180416Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1575043694:180353..180416TCONS_00049478-exon-scaffold_16-1575043694:180353..180416Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1491911889:180703..180891TCONS_00049478-exon-scaffold_16-1491911889:180703..180891Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1510915933:180703..180891TCONS_00049478-exon-scaffold_16-1510915933:180703..180891Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1575043694:180703..180891TCONS_00049478-exon-scaffold_16-1575043694:180703..180891Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1491911889:181962..182075TCONS_00049478-exon-scaffold_16-1491911889:181962..182075Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1510915933:181962..182075TCONS_00049478-exon-scaffold_16-1510915933:181962..182075Clytia hemisphaericaexon
TCONS_00049478-exon-scaffold_16-1575043694:181962..182075TCONS_00049478-exon-scaffold_16-1575043694:181962..182075Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049478-proteinTCONS_00049478-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:176222..182075 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.698766	0.374883	0.310911	0	0.148123	0.117049	0.917893	0.727117	1.52722	1.60508	1.27973	1.63189	3.57945	4.05868	6.89186	9.9017	0.16491	0.802882	1.28436	0.85527	0.47789	0.233098	0.377815	0.114496	0.589642	0.368369	0	0.0803675	0.487647	0.463011
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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