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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049470 ID=TCONS_00049470|Name=TCONS_00049470|organism=Clytia hemisphaerica|type=transcript|length=1604bp
GTTGTAACTTCCAACCAAAGCGTCATTGAGGATTTATTGAGTAGcccaaa
atataataaaaaatccTGGGGCTACAAAATGCTTGATAACTTTATAGGAA
ACGGTTTAGTTTCGAGCTACGGCGATTTATGGAAACAGCGACGTCGCCTT
ATAACTCCAGcttttcattttgatattttaaatggttttttacCAGTAAT
GGAACGATGCAGTAAGGAATTAATCCAAATTTTAGGCAAGCATGCTTGCG
AGGAAACTTCTTTTAATGCAATTAATATGGGAACAAAGTTAACGATGGCT
GTTATTTGTGAGACCTCGATGGGTTATAAAATATCTTTAACCAAGGAAAG
TCAGGATAATGATTTCAAATCTTTGTATGAAAATGCTACAATAGTAATGT
CTAAGCGATTCTATAGACCTTGGCTGATGAATGATTTTATCTATTCATTA
ACCCAAGATGGTAAAATATTCTTTAGCCACCGTGATGCGTTAAGAAACTG
GGTTACATCTATCATTGAAGAGAGAATCAGGTTCCGTAAAAATGAAACAG
GTGATCAAAATTTACGTCAGCCGAAAAGAAAGATTGTGATTGACGTTTTA
TTAGACGCTTACGAGAAAGGAGAAATCGGCGTCGAGGGTATGGTTGATGA
AGTTACGACATTAGTCTTTGCAGGTTACGAGACTACTTCATCAAACTTCG
CCTTTTCGCTCTATTGTTTAGGTCGTAATCCTGAATGTCAGGCTAAACTC
TACGAAGAGATCTCAGAATTTGGTAAAAGTGAGAATTTCAACTTGGATGA
TTTAAAAAGAATGGCTTACTTGGATTTAGTTATTAAAGAAACATTACGGC
TGCATGTCACCTTAAACGCTTTTTCAAGAGACATCAAGGAAGGAACCATA
CTTGGTGGTAAAATTTTCCCAGAATGCATGCTGGTAGTTGATGTCCGAAA
CCTTAACCATAATGAAGAAAATTGGGACAACCCAATGTCTTTCATTCCTG
AAAGATTTGAGAATTTCGATGAAAGGAAAAAAGACAAGGccttcatgttt
ataccattttCAGCCGGGCCACGAAATTGTGTCGGGCAACGGTTTGCATT
GATGGAGTTAAAGATAGCATTGTTTCATTGCGTGAaatattttgcgattt
tttcacttcaaaatgAATCTGAGATTGAACAAACTTTCCAAGGAGTAAAC
ACGTCGACTAACGGTTTACATTTGAAAGTGAAACGAAGAAATATCGGCTC
TGAATAGGAGCATCTGAACACTCTTAGATGGTGgaacaatttcaaaaaca
taTGCCAAATAACGTCGATACAACAGACAATGATGAACGTTAAACTAAGG
CACTGTTTTATCTGCGGAAGATTATGAGAATCTGATGAAAACCTACTACA
AACTTACGGCTTACTATCTAAAAAAACTATGATGTAATATATGGGGCCCC
TATATGGGCAAATCAAGTGATTTGAGTGGACTTTTGGATGATACATTTCT
CTTTTGAATACGTTTAATCAATTCAATTAATTGATGAAGACTGACATTAT
AATAAATACTAAATCCGGGTATAACTGTCTAACACAGAAGTTATTATTAT
GAAA Run BLAST on NCBI protein sequence of TCONS_00049470-protein >TCONS_00049470-protein ID=TCONS_00049470-protein|Name=TCONS_00049470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
VVTSNQSVIEDLLSSPKYNKKSWGYKMLDNFIGNGLVSSYGDLWKQRRRL
ITPAFHFDILNGFLPVMERCSKELIQILGKHACEETSFNAINMGTKLTMA
VICETSMGYKISLTKESQDNDFKSLYENATIVMSKRFYRPWLMNDFIYSL
TQDGKIFFSHRDALRNWVTSIIEERIRFRKNETGDQNLRQPKRKIVIDVL
LDAYEKGEIGVEGMVDEVTTLVFAGYETTSSNFAFSLYCLGRNPECQAKL
YEEISEFGKSENFNLDDLKRMAYLDLVIKETLRLHVTLNAFSRDIKEGTI
LGGKIFPECMLVVDVRNLNHNEENWDNPMSFIPERFENFDERKKDKAFMF
IPFSAGPRNCVGQRFALMELKIALFHCVKYFAIFSLQNESEIEQTFQGVN
TSTNGLHLKVKRRNIGSE Run BLAST on NCBI transcript from alignment at scaffold_159:164562..166165 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049470 ID=TCONS_00049470|Name=TCONS_00049470|organism=Clytia hemisphaerica|type=transcript|length=1604bp|location=Sequence derived from alignment at scaffold_159:164562..166165 (Clytia hemisphaerica)
TTTCATAATAATAACTTCTGTGTTAGACAGTTATACCCGGATTTAGTATT
TATTATAATGTCAGTCTTCATCAATTAATTGAATTGATTAAACGTATTCA
AAAGAGAAATGTATCATCCAAAAGTCCACTCAAATCACTTGATTTGCCCA
TATAGGGGCCCCATATATTACATCATAGTTTTTTTAGATAGTAAGCCGTA
AGTTTGTAGTAGGTTTTCATCAGATTCTCATAATCTTCCGCAGATAAAAC
AGTGCCTTAGTTTAACGTTCATCATTGTCTGTTGTATCGACGTTATTTGG
CAtatgtttttgaaattgttcCACCATCTAAGAGTGTTCAGATGCTCCTA
TTCAGAGCCGATATTTCTTCGTTTCACTTTCAAATGTAAACCGTTAGTCG
ACGTGTTTACTCCTTGGAAAGTTTGTTCAATCTCAGATTcattttgaagt
gaaaaaatcgcaaaatattTCACGCAATGAAACAATGCTATCTTTAACTC
CATCAATGCAAACCGTTGCCCGACACAATTTCGTGGCCCGGCTGaaaatg
gtataaacatgaaggCCTTGTCTTTTTTCCTTTCATCGAAATTCTCAAAT
CTTTCAGGAATGAAAGACATTGGGTTGTCCCAATTTTCTTCATTATGGTT
AAGGTTTCGGACATCAACTACCAGCATGCATTCTGGGAAAATTTTACCAC
CAAGTATGGTTCCTTCCTTGATGTCTCTTGAAAAAGCGTTTAAGGTGACA
TGCAGCCGTAATGTTTCTTTAATAACTAAATCCAAGTAAGCCATTCTTTT
TAAATCATCCAAGTTGAAATTCTCACTTTTACCAAATTCTGAGATCTCTT
CGTAGAGTTTAGCCTGACATTCAGGATTACGACCTAAACAATAGAGCGAA
AAGGCGAAGTTTGATGAAGTAGTCTCGTAACCTGCAAAGACTAATGTCGT
AACTTCATCAACCATACCCTCGACGCCGATTTCTCCTTTCTCGTAAGCGT
CTAATAAAACGTCAATCACAATCTTTCTTTTCGGCTGACGTAAATTTTGA
TCACCTGTTTCATTTTTACGGAACCTGATTCTCTCTTCAATGATAGATGT
AACCCAGTTTCTTAACGCATCACGGTGGCTAAAGAATATTTTACCATCTT
GGGTTAATGAATAGATAAAATCATTCATCAGCCAAGGTCTATAGAATCGC
TTAGACATTACTATTGTAGCATTTTCATACAAAGATTTGAAATCATTATC
CTGACTTTCCTTGGTTAAAGATATTTTATAACCCATCGAGGTCTCACAAA
TAACAGCCATCGTTAACTTTGTTCCCATATTAATTGCATTAAAAGAAGTT
TCCTCGCAAGCATGCTTGCCTAAAATTTGGATTAATTCCTTACTGCATCG
TTCCATTACTGgtaaaaaaccatttaaaatatcaaaatgaaaagCTGGAG
TTATAAGGCGACGTCGCTGTTTCCATAAATCGCCGTAGCTCGAAACTAAA
CCGTTTCCTATAAAGTTATCAAGCATTTTGTAGCCCCAggattttttatt
atattttgggCTACTCAATAAATCCTCAATGACGCTTTGGTTGGAAGTTA
CAAC Coding sequence (CDS) from alignment at scaffold_159:164562..166165 >TCONS_00049470 ID=TCONS_00049470|Name=TCONS_00049470|organism=Clytia hemisphaerica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_159:164562..166165 (Clytia hemisphaerica)
CTATTCAGAGCCGATATTTCTTCGTTTCACTTTCAAATGTAAACCGTTAG
TCGACGTGTTTACTCCTTGGAAAGTTTGTTCAATCTCAGATTcattttga
agtgaaaaaatcgcaaaatattTCACGCAATGAAACAATGCTATCTTTAA
CTCCATCAATGCAAACCGTTGCCCGACACAATTTCGTGGCCCGGCTGaaa
atggtataaacatgaaggCCTTGTCTTTTTTCCTTTCATCGAAATTCTCA
AATCTTTCAGGAATGAAAGACATTGGGTTGTCCCAATTTTCTTCATTATG
GTTAAGGTTTCGGACATCAACTACCAGCATGCATTCTGGGAAAATTTTAC
CACCAAGTATGGTTCCTTCCTTGATGTCTCTTGAAAAAGCGTTTAAGGTG
ACATGCAGCCGTAATGTTTCTTTAATAACTAAATCCAAGTAAGCCATTCT
TTTTAAATCATCCAAGTTGAAATTCTCACTTTTACCAAATTCTGAGATCT
CTTCGTAGAGTTTAGCCTGACATTCAGGATTACGACCTAAACAATAGAGC
GAAAAGGCGAAGTTTGATGAAGTAGTCTCGTAACCTGCAAAGACTAATGT
CGTAACTTCATCAACCATACCCTCGACGCCGATTTCTCCTTTCTCGTAAG
CGTCTAATAAAACGTCAATCACAATCTTTCTTTTCGGCTGACGTAAATTT
TGATCACCTGTTTCATTTTTACGGAACCTGATTCTCTCTTCAATGATAGA
TGTAACCCAGTTTCTTAACGCATCACGGTGGCTAAAGAATATTTTACCAT
CTTGGGTTAATGAATAGATAAAATCATTCATCAGCCAAGGTCTATAGAAT
CGCTTAGACATTACTATTGTAGCATTTTCATACAAAGATTTGAAATCATT
ATCCTGACTTTCCTTGGTTAAAGATATTTTATAACCCATCGAGGTCTCAC
AAATAACAGCCATCGTTAACTTTGTTCCCATATTAATTGCATTAAAAGAA
GTTTCCTCGCAAGCATGCTTGCCTAAAATTTGGATTAATTCCTTACTGCA
TCGTTCCATTACTGgtaaaaaaccatttaaaatatcaaaatgaaaagCTG
GAGTTATAAGGCGACGTCGCTGTTTCCATAAATCGCCGTAGCTCGAAACT
AAACCGTTTCCTATAAAGTTATCAAGCATTTTGTAGCCCCAggatttttt
attatattttgggCTACTCAATAAATCCTCAATGACGCTTTGGTTGGAAG
TTACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049470-exon-scaffold_159-1491911889:164562..166165 | TCONS_00049470-exon-scaffold_159-1491911889:164562..166165 | Clytia hemisphaerica | exon |
| TCONS_00049470-exon-scaffold_159-1510915933:164562..166165 | TCONS_00049470-exon-scaffold_159-1510915933:164562..166165 | Clytia hemisphaerica | exon |
| TCONS_00049470-exon-scaffold_159-1575043694:164562..166165 | TCONS_00049470-exon-scaffold_159-1575043694:164562..166165 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_159 | supercontig | scaffold_159:164562..166165 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00049470 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 8.844e-68 Identity = 157/433 (36.26%), Postives = 240/433 (55.43%), Query Frame = 1
Query: 1 VVTSNQSVIEDLLSSPKYNKKSWGYKMLDNFIGNGLVSSYGDLWKQRRRLITPAFHFDILNGFLPVMERCSKELIQILGKHACEETSFNAINMGTKLTMAVICETSMGYKISLTKESQDNDFKSLYENATIVMSKRFYR----PWLMNDFIYSLTQDGKIFFSHRDALR---NWVTSIIEERI-RFRKNET--GDQNLRQP---KRKIVIDVLLDAY--EKGEIGVEGMVDEVTTLVFAGYETTSSNFAFSLYCLGRNPECQAKLYEEISE-FGKSEN-FNLDDLKRMAYLDLVIKETLRLHVTLNAFSRDIKEGT-ILGGKIFPECMLVVDVRNLNHNEENWDNPMSFIPERFENFDERKKDK-AFMFIPFSAGPRNCVGQRFALMELKIALFHCVKYFAIFSLQNESEIEQTFQGVNTSTNGLHLKVKRRN 1242
V N +E +L+S K KS YK L+ ++G GL++S G+ W+ RR+++TP FHF IL FL +M + L++ L KH +E +FN T + +ICET+MG I +Q ND S Y A MS+ +R PWL D Y + ++G + H+ +L+ + S+I ER NE GD P KR+ +D+LL E + E + +EV T +F G++TT++ +SLY LG NPE Q K+ E+ + FGKS+ ++DLK++ YL+ VIKETLRL ++ F+R + E + G ++ V+ L+ + + NP F PERF F E + + + ++PFSAGPRNC+GQ+FA+ME K L +++F I S Q E+ Q + +NG+ +K+KRRN
Sbjct: 100 VALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHINQE-AFNCFFYITLCALDIICETAMGKNIG----AQSND-DSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEG---WEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERF--FPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRRN 521
The following BLAST results are available for this feature:
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