TCONS_00049433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049433
Unique NameTCONS_00049433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049433 ID=TCONS_00049433|Name=TCONS_00049433|organism=Clytia hemisphaerica|type=transcript|length=718bp
cNACGAGACTGTTGATCTTATGGACCCCAAAATAGCACAAAATATCGTCG
GAACGCGTCCAAAGCTTCACGCGAGGAAACGTGGAGGTGCGTCCGCAGGT
TTCGAAATGTCATCTGACGGGAAATTCATGATTGATAACAAAACAAATGA
TCAGACCAACAATGAGGATGATATTACTGAGAAGCCACTCGATATCGGTC
AACAAGACATGCTAGCAGggTTTGACAAGACACCGAAACAACTGAAAGCT
GGTAAGCGTAAAATGTTAGAAGACATGCCAGAGAGCGAAGGAGGGAAGTT
TGAATATCAACCTGGTGGCCGTGGTATCCATCGTGATCGTGACATGGATG
ATGACGATCAACCGGCACCGAAAAGACGATTCGGTGGCGAATATAAAGCC
AAAAAAGCCGGAGGTGACATGAAGTTGAAAGGAAAGCCAGACCCTTACGC
TTACATACCTCTTGATcgacaaaaattaaataaaagAAAACGAGCCAAGT
TGACAGGTCAATTTAACAGTATGGTAAAGGCGACAAAACGAGGAGCAGCC
AAAAgtaaacaacaaaagaaacataagaaataaatttcatttaattttat
agatttttataCTGCTTAagatattattttttgcttttgctaAAACTGAA
ATATACTTTAAATGACGTGGACTATCAAAATAATGAAGTATGCTCATCGT
CATTTTCATTTATCGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_159:2874..9790-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049433 ID=TCONS_00049433|Name=TCONS_00049433|organism=Clytia hemisphaerica|type=transcript|length=6917bp|location=Sequence derived from alignment at scaffold_159:2874..9790- (Clytia hemisphaerica)
CNACGAGACTGTTGATCTTATGGACCCCAAAATAGCACAAAATATCGTCG
GTACGTAATCCTTTCTCATTGGTGACGTTCCAATTGGCGTTAATCATCGA
GAAAAAATACTCAGCTAAACTTTGAAAATGTTTAGAAAACGTCTCATCTT
GTCCTGGAAGGTTCACCAGAATTTTAAACGGTTTTTGGAATTGTCTGTAA
AAAGACTATATCTACTGAGATTTCAAAATTCATTGCCGAAGACTTCGCGG
CGAAGAGACCATTGGTAGTACAAGCAATAAACTTAAGATAAACTCCATCA
TGGAGTAATTTGATAGTCACGTTTCAATTTAAAAAAAACAGAAGTTCCTA
ATTGTCATATTTTAAATATCACCAGGAACGCGTCCAAAGCTTCACGCGAG
GAAACGTGGAGGTGCGTCCGCAGGTTTCGAAATGTCATCTGACGGGAAAT
TCATGATTGATAACAAAACAAATGATCAGACCAACAATGAGGATGATATT
ACTGAGAAGCCACTCGATATCGGTCAACAAGACATGCTAGCAGGTTAGTA
TGTCGTCATTCAAATATCAATACATTACTAACCGGTTGAAGAAAGGCTGT
CGTATATTATAAGTAAATCCAAAGGCAGAATCTGCTTTTTTGTTACGTGC
AATCAAAATTGCTTTTTTTGTCTGTCCATACGAAAATTGCCTTGCCTTCA
AATGGACCTTTCAGAAAAACCACGCTATTGAAAGGTCAGGTTTCGTTCCG
ATGTTAAACTTTGATATGTGGCAGAGTTCAAAAGGGATTTAAACAAAATT
ACCTGGATTTTCAGGGGTTACAGCCTCAAAGCGTTGCACTTCCTCAGCAG
AGGGTGTAGGCTTTTTTTCTGGAAAAGCCCAATTGCTATGAGTAAACTTT
CGATTTTTTTCTTATAAGGGTTTGACAAGACACCGAAACAACTGAAAGCT
GGTAAGCGTAAAATGTTAGAAGACATGCCAGAGAGCGAAGGAGGGAAGTT
TGAATATCAACCTGGTGGCCGTGGTATCCATCGTGATCGTGACATGGATG
ATGACGATCAACCGGCACCGAAAAGACGATTCGGTGGCGAATATAAAGCC
AAAGTATGTATCAATCATTTAACAATAAAGTCCCTAGATATTGGAACATC
ATTAACAATAAATGAACTATGCCAGAACAACTTATTTATCAACTTGATAG
TCTGATTCATATTGTAACATATTGTTACCAAGCTATATACACAAATGTCG
AGCCTAATATCAATTTAAATTATTTTTAGCTGAACAGGAGGGCTAAGGTA
CTGCATACTTAGTGATGGCCTTAAAAGATCGAACAATGAATTTTCCTAAG
AGCTTTATCGAGTCTTGAAATGTTTATTGAACTCTACACATTTTTTTACA
AGCAACCCCAATTTTCGCAACTCGAGCTGCTAAGGATTTTCTGGATTTCA
TCCAAAATGTTGCTTAGGGGATTTTGAGCCGAAAATGCCTAGCAACTTTG
AAAGTTTTAGCTTTTTATATCATTCAATATCCAAAATACCTTAAAATTTG
GTATTCAAATTCCATCGGTACACATTTTAATGCCGAAGATGGCTCTTTCT
TAGGTATTTCCCGGTTCATACATAAAAGAAGTGCTATCATATTATTATCT
TGAATTTTGCTAAATTTTTAATTTTGTTTCAGAAAGCCGGAGGTGACATG
AAGTTGAAAGGAAAGCCAGACCCTTACGCTTACATACCTCTTGATCGACA
AAAATTAAATAAAAGGTAGGCTCTCAAAGACATACGAACAGGCCTTTTCG
TAAATTATTTTGAGTTCAACGACTGCCTCGTTTTGAAACCATTACCAAGG
TGATTATGTCCCTCGAGTCTTCAAGTGTTAATTTTAAATAGAGTAAACTT
CTTATGAACTCTTTTGGCAATCAATAGACGATATCGCGTTTAGATAAATG
CAATGCATTCTGGTTTCTCGGGGACTCTCAAAGGAATTATAATGTCGATT
ATATAATGATCTTAGTCTGGGAGCAGAATTCAATATGTCGAGTTATAGAC
GACTTTGCTTAACCCAGAAGGTGAATGGGGTAGTTATACATCGTTGGAAC
GGAAATTTTATGCTGATTATGGAAACCCGGGTCTTAAAAAGTCCATCCTG
GACAAAATTGCAAAAGAGGCTGGAGTTTGCACTCCGTCGTGGTGTTTTCT
CGATTTTACCTGTTTTAGAAAATTGCTTACTGTCAGCAAAGTTAAAGGTT
TTAGAATTTCATTTTTTATGCAAAATGCTGTCAATAGAATGTGTTAATAG
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNCCGTAACTCTTCCTGAACTATATTC
TTCATGAAGAGTTTTCCAAAAATTGCCTGCGGCGCTAAACTATCTTCAAA
TTTAGAAATTTACTAGTACACCCCTGTGTCAAATACGTTTGGCACTTGCC
CGCACGTCGTTGTATACTTATCCAACCGTCATAGTCCTTAAACAAGTGAA
AGCTTTGTTGTTTTGCTAAGTTTTTGTACTAACTTTAACGAATGTGATGG
CACAGGAAAAAAACTTAACATGGCCATTTTCGGGGTGGGAAATGTCCGTT
TTCGGGGTTGGGATTTGCCCTGGAAAAGTGAAACAACTACAGGCCTGGTA
AATGGCCATTTCCCAGGCCTGGGATTTCCAAATTTCGGGGTGTATAATGA
TGATTTTCCAGGCCTCATTTCCCCCAATGAACTTAACTGAGAACTAAGTC
AAAGATATCCATAAAAANTTCGGGGTGTATAATGAGGATTTTCCAGGCCT
CATTTCCCCCAATGAACTTAACTGAGAACTAAGTCAAAGATATCCATAAA
AAGTAGCGTTTGAGGTACTTAGTTTTCATAAAAATATCAGTCCAAAACAT
GGTGTAAAAATCGAAATTTTCTCCTGTCCCTGAAGACCACGGTTGCGACT
CCTCCGCCACGAAAACCTCAGTTCCTCGATACTAATTATACGTCGAAATT
AAGTCATTCTTTTACCATATGCTGTGATCGGAAAATGTAAACTAAAACTA
CTACTACTACGTTTGAGTTACGACATTACGTCATTCAGATNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTGCAAAAAAAAACTTTTT
CGAGATTTTTGAATTTTTTTCTATTACCCTATTCTATTTACAGCATTTTG
CACAAAAAATGAAATTTTAAAACCCTTTACTATGCTGAGAGTAAGCATTT
TTCTAAAACAGGTAAACTCGAAAAAACACCCCGACGGAGTGCAAACTCCA
GCCTCGTTTGCAATTTTGTCCAGGATAGACTTTTTAAGACCCAGGTTTCC
ATAATCAGCATAAAATTTCCGTTCCAACGATGTATAACAACCCCATTCAC
CTTCTGGGTTAAGCAAAATTGATATTTTGTGATTCTGCTCCCAGACTATC
TGGAATAGATTATAATTCCCTTGAGGGTCCCCGAGAAACCAGAATGCATT
GCATTTGTCTAAACGCGATATCGTCTATTACCATAGCAATATCTTGAAAC
ACGAGGTGGGCGTTGTTCGTGACGTAATTTATAAAAGGTCTATTCCCTAC
TAGAGAATCTAGCAATTTCAGGTATTTCAGGTAATTTCTTAAGACTAATA
TTAATGCAATGTCAAACTTTCATTGACTGTAAAATTATTCAGGTTCTTTT
TTACAAAGACCTGCCATATTCCTAAACACGCACTTGTGTTAATGACCTTG
TGATTGATCAAGATATTCTCTTCACTTACCTTTAGAAAACGAGCCAAGTT
GACAGGTCAATTTAACAGTATGGTAAAGGCGACAAAACGAGGAGCAGCCA
AAAGTAAACAACAAAAGAAACATAAGAAATAAATTTCATTTAATTTTATA
GATTTTTATACTGCTTAAGATATTATTTTTTGCTTTTGCTAAAACTGAAA
TATACTTTAAATGACGTGGACTATCAAAATAATGAAGTATGCTCATCGTC
ATTTTCATTTATCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031377XLOC_031377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049433-exon-scaffold_159-1575043694:9741..9790TCONS_00049433-exon-scaffold_159-1575043694:9741..9790Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1575043694:9248..9415TCONS_00049433-exon-scaffold_159-1575043694:9248..9415Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1575043694:8688..8872TCONS_00049433-exon-scaffold_159-1575043694:8688..8872Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1575043694:8026..8108TCONS_00049433-exon-scaffold_159-1575043694:8026..8108Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1575043694:2874..3105TCONS_00049433-exon-scaffold_159-1575043694:2874..3105Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1510915933:9741..9790TCONS_00049433-exon-scaffold_159-1510915933:9741..9790Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1510915933:9248..9415TCONS_00049433-exon-scaffold_159-1510915933:9248..9415Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1510915933:8688..8872TCONS_00049433-exon-scaffold_159-1510915933:8688..8872Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1510915933:8026..8108TCONS_00049433-exon-scaffold_159-1510915933:8026..8108Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1510915933:2874..3105TCONS_00049433-exon-scaffold_159-1510915933:2874..3105Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1491911889:9741..9790TCONS_00049433-exon-scaffold_159-1491911889:9741..9790Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1491911889:9248..9415TCONS_00049433-exon-scaffold_159-1491911889:9248..9415Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1491911889:8688..8872TCONS_00049433-exon-scaffold_159-1491911889:8688..8872Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1491911889:8026..8108TCONS_00049433-exon-scaffold_159-1491911889:8026..8108Clytia hemisphaericaexon
TCONS_00049433-exon-scaffold_159-1491911889:2874..3105TCONS_00049433-exon-scaffold_159-1491911889:2874..3105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_159supercontigscaffold_159:2874..9790 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	19.6427	11.6929	7.14054	5.93631	2.31632	5.20387	6.13156	5.80743	10.0688	13.6647	0	0	0	0	0	0	0	0	0	0	14.6719	13.9045	0	0	0	0
Blast
[Close]
BLAST of TCONS_00049433 vs. Swiss-Prot (Human)
Match: RRP12 (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.180e-19
Identity = 67/187 (35.83%), Postives = 104/187 (55.61%), Query Frame = 2 
Query:    5 ETVDLMDPKIAQNIVGTRPKL-HARKRGGASAGFEMSSDGKFMIDNKTNDQTNNEDDIT----EKPLDIGQQDMLAGFDKTPKQLKAGKRKMLEDMPESEGGKFEYQPGGRGIHXXXXXXXXXQPAPKRRF-GGEYKAKKAGGDMKLKGKPDPYAYIPLDRQKLNKRKRAKLTGQFNSMVKATKRGA 547
            E ++ +DPK+AQ ++ T+P     RK+     GF++S+DG+ +I  + +     E++      E+  D  +  ++        + +    +   ++P       +YQ GG GIH         +P  K+   G EYKAKKA GD+K KG+PDPYAYIPL+R KLN+RK+ KL GQF  +VKA +RG+
Sbjct: 1116 EPLNFLDPKVAQRVLATQPGPGRGRKK---DHGFKVSADGRLIIREEADGNKMEEEEGAKGEDEEMADPMEDVIIRNKKHQKLKHQKEAEEEELEIPP------QYQAGGSGIH---------RPVAKKAMPGAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRGS 1284
The following BLAST results are available for this feature:
BLAST of TCONS_00049433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP124.180e-1935.83RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 S... [more]
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