TCONS_00049348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049348
Unique NameTCONS_00049348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049348 ID=TCONS_00049348|Name=TCONS_00049348|organism=Clytia hemisphaerica|type=transcript|length=1597bp
NATAGAGCTGCGAAATATATTGTtatataataaaaattaaaagaaaagaa
aatgaattatGACATTGGAAATAttgttcatttttcaaacaGTGATGGGA
TAGCAACACCGCTCACTTTGTTTTTCAATGTTACAATTGATGATAAATTT
ATTGGCTCTTGTCAATTCACTATAGAGAACGTTTCACTGAAGGTTGAACT
GGGAGATAACCATGGTAACAACTTTCTGTTTAAACCAAACAAAATAGAAG
AAGGATTAGAAAATAAGCGGGAAGAATCATCGCCTGATATTAATAAGAAT
CGATTAGGCCTTGGTGAAGAAGTTACAATAAAGATGGAGAATGATATGAA
AATAAAAGTCGAACCAGAAGAGAATCTCGATGAGGAACAGACTGATACAC
AAGCTGCAGAAAACCGCCTTGATAATAGTGGTAAGGCTATTGAACAAGGT
TCCGAAATGTTAGAAGAAGATAAAGTAGAAAATCCAAGCAATTGTCATGC
TAGTGGTAAAGCATTTTCGCAGTACAATCAACTTGGATACATCAGAAGTC
TTGATAATATTAATAAATTAAATGAATATGAAGTACCTGGTGAGCGATTT
ACAGGACAGCAAAACAAGAACACTCCTACTGTTAAGAAACCTTTCACGTG
TGAGATATGTGGTAATGGGTTTTCACGAAAAGATACTCTAAAAATCCACA
CAAGGCTTCATACTGGTCAGGTATCGTTTAAGTGTGAAGTTTGTGGTAAA
GAGTACACAcggaaagataaacttaaaattcatcTCTTATCACATTCAGA
TGAAAAACCATTTAACTGTGGAGTATGTGGGAAGGGTTTTGCTCGCAAGG
ATAATCTTACAGACCATCTTAGATCCCATACTGGAGAGAAACCTTTTCCC
TGTAAGGTATGTGGTAAgtctttttcacaaaaaggtgGTCTATTAATACA
CACTAGAATTCATACTGGATTTGCACCTTTTAAGTGTCACCTTTGTGAAA
AACGTTTTACCAGAAATGACCAACTTAGAAATCATTTATTAACACATTCG
GACAAAAAACCATTTAGCTGTGAGGTTTGTGAGAAAGGTTTTAACACAAA
ATCTAACATGTTGGTTCACATGCGTATTCATGATGATAAGAAACCTATTA
AAAGCGATGAAGGTGGTAAGGAGTTTGCGCAAAATGATAACGCTGATTGA
AAGATAAATTAAATGGACTCaattgaaacaaattttaatAGAGAACGTTG
AAGAAGGAATATtccaattttttatcttttcgcTGACTGTTTGGCATCAA
ACAAAGCACACCGAAATGGTAAACATAGGAGCTCGAAGAAGTGACGAAAT
AGATTCGCAAAACTTAGTTGAGAATGATATATTTTATCTCCCTTGAACTT
TTCTTGAGCACTTTGGGACTGTCATTTTATTATAATTATgtatattgaca
ctttttttagattttctttatttttaaccaaagattaatattttttctct
gtTCTATCTACCTTTGTTTTGACTAACATTGTCCAACAGTAACCTTGACC
CACATACTATTGTAGGCAAGTGAAACGGCGAACTCTGTATTGGCCgc
Run BLAST on NCBI

protein sequence of TCONS_00049348-protein

>TCONS_00049348-protein ID=TCONS_00049348-protein|Name=TCONS_00049348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MNYDIGNIVHFSNSDGIATPLTLFFNVTIDDKFIGSCQFTIENVSLKVEL
GDNHGNNFLFKPNKIEEGLENKREESSPDINKNRLGLGEEVTIKMENDMK
IKVEPEENLDEEQTDTQAAENRLDNSGKAIEQGSEMLEEDKVENPSNCHA
SGKAFSQYNQLGYIRSLDNINKLNEYEVPGERFTGQQNKNTPTVKKPFTC
EICGNGFSRKDTLKIHTRLHTGQVSFKCEVCGKEYTRKDKLKIHLLSHSD
EKPFNCGVCGKGFARKDNLTDHLRSHTGEKPFPCKVCGKSFSQKGGLLIH
TRIHTGFAPFKCHLCEKRFTRNDQLRNHLLTHSDKKPFSCEVCEKGFNTK
SNMLVHMRIHDDKKPIKSDEGGKEFAQNDNAD
Run BLAST on NCBI

transcript from alignment at scaffold_154:810983..812579

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049348 ID=TCONS_00049348|Name=TCONS_00049348|organism=Clytia hemisphaerica|type=transcript|length=1597bp|location=Sequence derived from alignment at scaffold_154:810983..812579 (Clytia hemisphaerica)
gcGGCCAATACAGAGTTCGCCGTTTCACTTGCCTACAATAGTATGTGGGT
CAAGGTTACTGTTGGACAATGTTAGTCAAAACAAAGGTAGATAGAacaga
gaaaaaatattaatctttggttaaaaataaagaaaatctaaaaaaagtgt
caatatacATAATTATAATAAAATGACAGTCCCAAAGTGCTCAAGAAAAG
TTCAAGGGAGATAAAATATATCATTCTCAACTAAGTTTTGCGAATCTATT
TCGTCACTTCTTCGAGCTCCTATGTTTACCATTTCGGTGTGCTTTGTTTG
ATGCCAAACAGTCAgcgaaaagataaaaaattggaATATTCCTTCTTCAA
CGTTCTCTattaaaatttgtttcaattGAGTCCATTTAATTTATCTTTCA
ATCAGCGTTATCATTTTGCGCAAACTCCTTACCACCTTCATCGCTTTTAA
TAGGTTTCTTATCATCATGAATACGCATGTGAACCAACATGTTAGATTTT
GTGTTAAAACCTTTCTCACAAACCTCACAGCTAAATGGTTTTTTGTCCGA
ATGTGTTAATAAATGATTTCTAAGTTGGTCATTTCTGGTAAAACGTTTTT
CACAAAGGTGACACTTAAAAGGTGCAAATCCAGTATGAATTCTAGTGTGT
ATTAATAGACcacctttttgtgaaaaagacTTACCACATACCTTACAGGG
AAAAGGTTTCTCTCCAGTATGGGATCTAAGATGGTCTGTAAGATTATCCT
TGCGAGCAAAACCCTTCCCACATACTCCACAGTTAAATGGTTTTTCATCT
GAATGTGATAAGAgatgaattttaagtttatctttccgTGTGTACTCTTT
ACCACAAACTTCACACTTAAACGATACCTGACCAGTATGAAGCCTTGTGT
GGATTTTTAGAGTATCTTTTCGTGAAAACCCATTACCACATATCTCACAC
GTGAAAGGTTTCTTAACAGTAGGAGTGTTCTTGTTTTGCTGTCCTGTAAA
TCGCTCACCAGGTACTTCATATTCATTTAATTTATTAATATTATCAAGAC
TTCTGATGTATCCAAGTTGATTGTACTGCGAAAATGCTTTACCACTAGCA
TGACAATTGCTTGGATTTTCTACTTTATCTTCTTCTAACATTTCGGAACC
TTGTTCAATAGCCTTACCACTATTATCAAGGCGGTTTTCTGCAGCTTGTG
TATCAGTCTGTTCCTCATCGAGATTCTCTTCTGGTTCGACTTTTATTTTC
ATATCATTCTCCATCTTTATTGTAACTTCTTCACCAAGGCCTAATCGATT
CTTATTAATATCAGGCGATGATTCTTCCCGCTTATTTTCTAATCCTTCTT
CTATTTTGTTTGGTTTAAACAGAAAGTTGTTACCATGGTTATCTCCCAGT
TCAACCTTCAGTGAAACGTTCTCTATAGTGAATTGACAAGAGCCAATAAA
TTTATCATCAATTGTAACATTGAAAAACAAAGTGAGCGGTGTTGCTATCC
CATCACtgtttgaaaaatgaacaaTATTTCCAATGTCataattcattttc
ttttcttttaatttttattatataACAATATATTTCGCAGCTCTATN

Coding sequence (CDS) from alignment at scaffold_154:810983..812579

>TCONS_00049348 ID=TCONS_00049348|Name=TCONS_00049348|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_154:810983..812579 (Clytia hemisphaerica)
TCAATCAGCGTTATCATTTTGCGCAAACTCCTTACCACCTTCATCGCTTT
TAATAGGTTTCTTATCATCATGAATACGCATGTGAACCAACATGTTAGAT
TTTGTGTTAAAACCTTTCTCACAAACCTCACAGCTAAATGGTTTTTTGTC
CGAATGTGTTAATAAATGATTTCTAAGTTGGTCATTTCTGGTAAAACGTT
TTTCACAAAGGTGACACTTAAAAGGTGCAAATCCAGTATGAATTCTAGTG
TGTATTAATAGACcacctttttgtgaaaaagacTTACCACATACCTTACA
GGGAAAAGGTTTCTCTCCAGTATGGGATCTAAGATGGTCTGTAAGATTAT
CCTTGCGAGCAAAACCCTTCCCACATACTCCACAGTTAAATGGTTTTTCA
TCTGAATGTGATAAGAgatgaattttaagtttatctttccgTGTGTACTC
TTTACCACAAACTTCACACTTAAACGATACCTGACCAGTATGAAGCCTTG
TGTGGATTTTTAGAGTATCTTTTCGTGAAAACCCATTACCACATATCTCA
CACGTGAAAGGTTTCTTAACAGTAGGAGTGTTCTTGTTTTGCTGTCCTGT
AAATCGCTCACCAGGTACTTCATATTCATTTAATTTATTAATATTATCAA
GACTTCTGATGTATCCAAGTTGATTGTACTGCGAAAATGCTTTACCACTA
GCATGACAATTGCTTGGATTTTCTACTTTATCTTCTTCTAACATTTCGGA
ACCTTGTTCAATAGCCTTACCACTATTATCAAGGCGGTTTTCTGCAGCTT
GTGTATCAGTCTGTTCCTCATCGAGATTCTCTTCTGGTTCGACTTTTATT
TTCATATCATTCTCCATCTTTATTGTAACTTCTTCACCAAGGCCTAATCG
ATTCTTATTAATATCAGGCGATGATTCTTCCCGCTTATTTTCTAATCCTT
CTTCTATTTTGTTTGGTTTAAACAGAAAGTTGTTACCATGGTTATCTCCC
AGTTCAACCTTCAGTGAAACGTTCTCTATAGTGAATTGACAAGAGCCAAT
AAATTTATCATCAATTGTAACATTGAAAAACAAAGTGAGCGGTGTTGCTA
TCCCATCACtgtttgaaaaatgaacaaTATTTCCAATGTCataattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031319XLOC_031319Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049348-proteinTCONS_00049348-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049348-exon-scaffold_154-1491911889:810983..812579TCONS_00049348-exon-scaffold_154-1491911889:810983..812579Clytia hemisphaericaexon
TCONS_00049348-exon-scaffold_154-1510915933:810983..812579TCONS_00049348-exon-scaffold_154-1510915933:810983..812579Clytia hemisphaericaexon
TCONS_00049348-exon-scaffold_154-1575043694:810983..812579TCONS_00049348-exon-scaffold_154-1575043694:810983..812579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:810983..812579 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.511207	0.473582	0.376229	0.226512	12.0299	8.22596	9.10273	10.0601	3.85552	4.56224	3.57365	2.17895	2.8389	3.14242	5.21053	5.23345	6.735	7.2375	2.20087	1.79126	3.95411	3.50778	2.90139	3.75685	3.56759	4.89844	2.62862	1.30916	1.39013	1.24289
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00049348 vs. Swiss-Prot (Human)
Match: ZN300 (Zinc finger protein 300 OS=Homo sapiens GN=ZNF300 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.100e-56
Identity = 102/257 (39.69%), Postives = 146/257 (56.81%), Query Frame = 1 
Query:  430 GKAIEQGSEMLEEDKV---ENPSNCHASGKAFSQYNQLGYIRSLDNINKLNEYEVPGERFTGQQNKNTPTVKKPFTCEICGNGFSRKDTLKIHTRLHTGQVSFKCEVCGKEYTRKDKLKIHLLSHSDEKPFNCGVCGKGFARKDNLTDHLRSHTGEKPFPCKVCGKSFSQKGGLLIHTRIHTGFAPFKCHLCEKRFTRNDQLRNHLLTHSDKKPFSCEVCEKGFNTKSNMLVHMRIHDDKKPIKSDEGGKEFAQNDN 1191
            GKA  + S+++   ++   + P +C A GKAFS                        E+F    ++ T T +KP+ C  CG  FS+K +L IH R+HTG+  ++C  CGK +++K  L IH   H+ EKP+ C  CGK F++K  L  H R+HTGEKP+ C  CGK+F +K  L+IH RIHTG  P+KC  CE+ F+R  +L  H L H+ +KP+ C  C K F+ KS +++H R H  +KP K  E GK F Q  +
Sbjct:  275 GKAFAKKSQLIVHQRIHTGKKPYDCGACGKAFS------------------------EKFHLVVHQRTHTGEKPYDCSECGKAFSQKSSLIIHQRVHTGEKPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSH 507

HSP 2 Score: 190.274 bits (482), Expect = 1.363e-52
Identity = 106/274 (38.69%), Postives = 146/274 (53.28%), Query Frame = 1 
Query:  397 TQAAENRLDNS--GKAIEQGSEMLEEDKV---ENPSNCHASGKAFSQYNQLGYIRSLDNINKLNEYEVPGERFTGQQ----NKNTPTVKKPFTCEICGNGFSRKDTLKIHTRLHTGQVSFKCEVCGKEYTRKDKLKIHLLSHSDEKPFNCGVCGKGFARKDNLTDHLRSHTGEKPFPCKVCGKSFSQKGGLLIHTRIHTGFAPFKCHLCEKRFTRNDQLRNHLLTHSDKKPFSCEVCEKGFNTKSNMLVHMRIHDDKKPIKSDEGGKEFAQNDN 1191
            T   E   D S  GKA  Q S ++   +V   E P  C   GKAFSQ + L   + +    K  E    G+ F+ +     +    T +KP+ C  CG  F  K  L IH R+HTG+  +KC  C + ++RK +L  H L H+ EKP+ C  CGK F+RK  L  H R+HTGEKP+ C  CGK+F QK  L+ H RIHTG  P+ C  C K F++   L  H   H+ +KP+ C  C K F+ KS++++H RIH  ++P +    GK F Q   
Sbjct:  318 THTGEKPYDCSECGKAFSQKSSLIIHQRVHTGEKPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRIHTGEKPYICAECGKAFSQKSDLVLHQRIHTGERPYQCAICGKAFIQKSQ 591

HSP 3 Score: 181.415 bits (459), Expect = 1.870e-49
Identity = 100/261 (38.31%), Postives = 139/261 (53.26%), Query Frame = 1 
Query:  430 GKAIEQGSEMLEEDKV---ENPSNCHASGKAFSQYNQLGYIRSLDNINKLNEYEVPGERFTGQQ----NKNTPTVKKPFTCEICGNGFSRKDTLKIHTRLHTGQVSFKCEVCGKEYTRKDKLKIHLLSHSDEKPFNCGVCGKGFARKDNLTDHLRSHTGEKPFPCKVCGKSFSQKGGLLIHTRIHTGFAPFKCHLCEKRFTRNDQLRNHLLTHSDKKPFSCEVCEKGFNTKSNMLVHMRIHDDKKPIKSDEGGKEFAQNDN 1191
            GKA  +   ++   +    E P +C   GKAFSQ + L   + +    K  E    G+ F+ +     ++   T +KP+ C  CG  FS+K  L IH R HTG+  ++C  CGK +  K  L IH   H+ EKP+ C  C + F+RK  L  H   HTGEKP+ C  CGK+FS+K  L+IH R HTG  P+KC  C K F +   L  H   H+ +KP+ C  C K F+ KS++  H RIH  +KP    E GK F+Q  +
Sbjct:  303 GKAFSEKFHLVVHQRTHTGEKPYDCSECGKAFSQKSSLIIHQRVHTGEKPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRIHTGEKPYICAECGKAFSQKSD 563

HSP 4 Score: 179.489 bits (454), Expect = 7.961e-49
Identity = 98/241 (40.66%), Postives = 131/241 (54.36%), Query Frame = 1 
Query:  430 GKAIEQGSEMLEEDKV---ENPSNCHASGKAFSQYNQLGYIRSLDNINKLNEYEVPGERFTGQQN----KNTPTVKKPFTCEICGNGFSRKDTLKIHTRLHTGQVSFKCEVCGKEYTRKDKLKIHLLSHSDEKPFNCGVCGKGFARKDNLTDHLRSHTGEKPFPCKVCGKSFSQKGGLLIHTRIHTGFAPFKCHLCEKRFTRNDQLRNHLLTHSDKKPFSCEVCEKGFNTKSNMLVHMRIH 1131
            GKA  Q S ++   ++   E P  C   GKAFSQ +QL          K  E    G+ F  + +    K   T +KP+ C  C   FSRK  L  H  +HTG+  ++C  CGK ++RK +L IH  +H+ EKP+ C  CGK F +K +L  H R HTGEKP+ C  CGK+FSQK  L  H RIHTG  P+ C  C K F++   L  H   H+ ++P+ C +C K F  KS + VH RIH
Sbjct:  359 GKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRIHTGEKPYICAECGKAFSQKSDLVLHQRIHTGERPYQCAICGKAFIQKSQLTVHQRIH 599

HSP 5 Score: 151.369 bits (381), Expect = 2.447e-39
Identity = 84/214 (39.25%), Postives = 117/214 (54.67%), Query Frame = 1 
Query:  430 GKAIEQGSEMLEEDKV---ENPSNCHASGKAFSQYNQLGYIRSLDNINKLNEYEVPGERFTGQQ----NKNTPTVKKPFTCEICGNGFSRKDTLKIHTRLHTGQVSFKCEVCGKEYTRKDKLKIHLLSHSDEKPFNCGVCGKGFARKDNLTDHLRSHTGEKPFPCKVCGKSFSQKGGLLIHTRIHTGFAPFKCHLCEKRFTRNDQLRNHLLTHS 1050
            GKA  Q S+++   +    E P  C   GKAF + + L   + +    K  +     E F+ +     ++   T +KP+ C  CG  FSRK  L IH R HTG+  +KC  CGK + +K  L  H   H+ EKP+ C  CGK F++K +L  H R HTGEKP+ C  CGK+FSQK  L++H RIHTG  P++C +C K F +  QL  H   H+
Sbjct:  387 GKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRIHTGEKPYICAECGKAFSQKSDLVLHQRIHTGERPYQCAICGKAFIQKSQLTVHQRIHT 600
The following BLAST results are available for this feature:
BLAST of TCONS_00049348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3003.100e-5639.69Zinc finger protein 300 OS=Homo sapiens GN=ZNF300 ... [more]
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