TCONS_00049328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049328
Unique NameTCONS_00049328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049328 ID=TCONS_00049328|Name=TCONS_00049328|organism=Clytia hemisphaerica|type=transcript|length=699bp
TTTTGATAGAGGTATACAATGCTCAGTAGATCAGATATGGAAATAAGTAG
CATGGTGGATTGATCGAGATTAGAGAAGCTAAATATTTATAATTTCTCGG
CTGCCTGTGGGAAGCAAAAGAACGAGTATATTGGCGTCCCTTGGTTTTCA
ACATCTGTTTAAAATTGGGGAGGCTCTGTCCCCTGCCACCGCGCTTACTA
TATATATAGGTAGAAAAAGCGCTCAAACTATTTATCGAGTAAATTCTAGT
AACAGGTAGTCCCTATTAGTTAGACCATACCCATGGACGTAATAAAAATA
TGTCTTTATTACCTCTATGGTTAGACTCTCAACCtaagaatacacctttc
ccgtaattcaaacttctcagaaatggcccgggaaaatgtgcgctccaccg
ttgtgtatatgATTGTTTGGGAGATAAACGAACgtgtttttgcctgcgag
gggttagggaaagtgggttttcagcttctaacttttgatagcgatcttct
tttggcaaaagattttcagggtggtataatatcatgaatagattgaacat
actaaaatttgaggggattttgttcgacagaacttaaaAAATCAACTGAA
CTGAATCAACTTAATAATTTGCTCGAATTAGAAGAAGTTGACTTTATTAT
CGAGGGTGTTATAAGTTGCTTGCTGATTTAGATAGCGATTCCCACTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_154:304007..304705

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049328 ID=TCONS_00049328|Name=TCONS_00049328|organism=Clytia hemisphaerica|type=transcript|length=699bp|location=Sequence derived from alignment at scaffold_154:304007..304705 (Clytia hemisphaerica)
TTCAGTGGGAATCGCTATCTAAATCAGCAAGCAACTTATAACACCCTCGA
TAATAAAGTCAACTTCTTCTAATTCGAGCAAATTATTAAGTTGATTCAGT
TCAGTTGATTTtttaagttctgtcgaacaaaatcccctcaaattttagta
tgttcaatctattcatgatattataccaccctgaaaatcttttgccaaaa
gaagatcgctatcaaaagttagaagctgaaaacccactttccctaacccc
tcgcaggcaaaaacacGTTCGTTTATCTCCCAAACAATcatatacacaac
ggtggagcgcacattttcccgggccatttctgagaagtttgaattacggg
aaaggtgtattcttaGGTTGAGAGTCTAACCATAGAGGTAATAAAGACAT
ATTTTTATTACGTCCATGGGTATGGTCTAACTAATAGGGACTACCTGTTA
CTAGAATTTACTCGATAAATAGTTTGAGCGCTTTTTCTACCTATATATAT
AGTAAGCGCGGTGGCAGGGGACAGAGCCTCCCCAATTTTAAACAGATGTT
GAAAACCAAGGGACGCCAATATACTCGTTCTTTTGCTTCCCACAGGCAGC
CGAGAAATTATAAATATTTAGCTTCTCTAATCTCGATCAATCCACCATGC
TACTTATTTCCATATCTGATCTACTGAGCATTGTATACCTCTATCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031299XLOC_031299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049328-exon-scaffold_154-1491911889:304007..304705TCONS_00049328-exon-scaffold_154-1491911889:304007..304705Clytia hemisphaericaexon
TCONS_00049328-exon-scaffold_154-1510915933:304007..304705TCONS_00049328-exon-scaffold_154-1510915933:304007..304705Clytia hemisphaericaexon
TCONS_00049328-exon-scaffold_154-1575043694:304007..304705TCONS_00049328-exon-scaffold_154-1575043694:304007..304705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:304007..304705 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29826	1.70037	3.49273	3.29124	1.96168	1.76618	1.45614	2.18207	1.22345	0.942002	1.41912	1.81076	2.39374	1.84829	1.2204	1.04986	1.04187	2.35138	0.661249	1.18714	1.0346	2.04618	0.087317	0.393414	1.89208	1.32924	30.1006	21.5057	1.46967	1.76744
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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